Wall clock time and date at job start Wed Apr 1 2020 05:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33323 * 126.81283 * 2 1 4 4 N 1.28520 * 109.43546 * 179.97438 * 3 2 1 5 5 N 1.28709 * 110.63827 * 359.71024 * 4 3 2 6 6 H 0.97003 * 126.03707 * 180.29229 * 5 4 3 7 7 C 1.37008 * 126.81194 * 179.97438 * 2 1 3 8 8 C 1.47230 * 127.18873 * 0.02562 * 7 2 1 9 9 O 1.21608 * 120.00393 * 331.26256 * 8 7 2 10 10 N 1.34784 * 119.99710 * 151.26027 * 8 7 2 11 11 C 1.46924 * 120.62675 * 3.68488 * 10 8 7 12 12 C 1.53196 * 108.77536 * 233.58477 * 11 10 8 13 13 C 1.53045 * 109.31418 * 305.37118 * 12 11 10 14 14 C 1.52997 * 109.46040 * 181.38485 * 13 12 11 15 15 H 1.09000 * 109.49634 * 299.90425 * 14 13 12 16 16 C 1.53038 * 109.49469 * 179.80866 * 14 13 12 17 17 C 1.53044 * 109.53400 * 178.68093 * 16 14 13 18 18 C 1.52759 * 109.38552 * 61.24372 * 17 16 14 19 19 N 1.46932 * 109.00425 * 305.58470 * 18 17 16 20 20 C 1.36930 * 120.62974 * 233.58158 * 19 18 17 21 21 H 1.08000 * 119.99838 * 151.53256 * 20 19 18 22 22 C 1.38817 * 120.00186 * 331.26188 * 20 19 18 23 23 N 1.31618 * 119.99703 * 160.23715 * 22 20 19 24 24 Si 1.86793 * 119.99978 * 340.23827 * 22 20 19 25 25 H 1.48504 * 109.47381 * 95.17492 * 24 22 20 26 26 H 1.48497 * 109.47129 * 215.17790 * 24 22 20 27 27 H 1.48508 * 109.47266 * 335.17589 * 24 22 20 28 28 C 1.46926 * 118.73866 * 53.30865 * 19 18 17 29 29 C 1.53033 * 109.52528 * 61.36683 * 13 12 11 30 30 C 1.46919 * 120.63333 * 183.66318 * 10 8 7 31 31 H 1.09001 * 109.47202 * 270.02882 * 1 2 3 32 32 H 1.08997 * 109.46994 * 30.03132 * 1 2 3 33 33 H 1.08997 * 109.47147 * 150.03009 * 1 2 3 34 34 H 1.09001 * 109.58721 * 113.80306 * 11 10 8 35 35 H 1.08993 * 109.59171 * 353.37275 * 11 10 8 36 36 H 1.08994 * 109.50197 * 185.41383 * 12 11 10 37 37 H 1.09010 * 109.49591 * 65.31866 * 12 11 10 38 38 H 1.09000 * 109.45442 * 301.35725 * 13 12 11 39 39 H 1.08999 * 109.46103 * 298.69770 * 16 14 13 40 40 H 1.08994 * 109.46094 * 58.66413 * 16 14 13 41 41 H 1.09004 * 109.49312 * 181.31833 * 17 16 14 42 42 H 1.09001 * 109.49834 * 301.37824 * 17 16 14 43 43 H 1.08995 * 109.51098 * 185.70232 * 18 17 16 44 44 H 1.08995 * 109.43594 * 65.41519 * 18 17 16 45 45 H 0.97002 * 119.99616 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.58371 * 66.43117 * 28 19 18 47 47 H 1.08997 * 109.58501 * 186.85444 * 28 19 18 48 48 H 1.08997 * 109.50184 * 58.58496 * 29 13 12 49 49 H 1.09007 * 109.49859 * 178.67901 * 29 13 12 50 50 H 1.08995 * 109.58604 * 246.20145 * 30 10 8 51 51 H 1.09005 * 109.58575 * 6.48536 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6835 0.0005 5 7 3.6056 -0.6015 0.0070 6 1 4.4212 -1.1266 0.0127 7 6 2.3279 -1.0969 0.0005 8 6 1.9221 -2.5122 0.0006 9 8 0.8667 -2.8421 0.5066 10 7 2.7205 -3.4421 -0.5602 11 6 4.0343 -3.0715 -1.1036 12 6 4.1235 -3.5585 -2.5533 13 6 3.8231 -5.0584 -2.6028 14 6 3.9452 -5.5553 -4.0447 15 1 3.2328 -5.0226 -4.6746 16 6 3.6497 -7.0561 -4.0944 17 6 3.7393 -7.5476 -5.5410 18 6 5.1539 -7.3154 -6.0687 19 7 5.5052 -5.9000 -5.8891 20 6 5.9472 -5.1513 -6.9470 21 1 5.7726 -4.0856 -6.9646 22 6 6.6245 -5.7610 -7.9940 23 7 6.7086 -5.1601 -9.1620 24 14 7.4166 -7.4343 -7.7454 25 1 6.4847 -8.4961 -8.2031 26 1 8.6749 -7.5079 -8.5305 27 1 7.7199 -7.6293 -6.3048 28 6 5.3674 -5.3018 -4.5543 29 6 2.4023 -5.3125 -2.0944 30 6 2.2937 -4.8457 -0.6394 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8902 -0.5133 34 1 4.8201 -3.5406 -0.5115 35 1 4.1494 -1.9880 -1.0744 36 1 5.1269 -3.3755 -2.9375 37 1 3.3965 -3.0216 -3.1629 38 1 4.5350 -5.5922 -1.9732 39 1 4.3777 -7.5900 -3.4837 40 1 2.6471 -7.2417 -3.7093 41 1 3.5057 -8.6117 -5.5787 42 1 3.0283 -6.9971 -6.1570 43 1 5.1938 -7.5703 -7.1277 44 1 5.8549 -7.9390 -5.5140 45 1 7.1816 -5.5863 -9.8938 46 1 6.0862 -5.7580 -3.8735 47 1 5.5482 -4.2286 -4.6144 48 1 1.6917 -4.7590 -2.7083 49 1 2.1804 -6.3782 -2.1519 50 1 2.9375 -5.4595 -0.0095 51 1 1.2610 -4.9333 -0.3015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961394185.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:54 Heat of formation + Delta-G solvation = 88.993843 kcal Electronic energy + Delta-G solvation = -31669.244982 eV Core-core repulsion = 27606.550016 eV Total energy + Delta-G solvation = -4062.694966 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.83738 -40.57061 -38.86721 -37.21474 -34.89294 -34.03247 -32.99999 -32.48380 -31.47666 -30.74526 -29.88111 -28.24490 -25.94803 -25.49887 -24.17489 -23.99400 -22.73227 -21.94334 -21.61573 -20.82795 -19.98838 -19.43234 -18.34103 -17.42942 -16.84420 -16.79101 -16.48806 -15.63292 -15.29786 -14.75757 -14.63213 -14.32766 -14.22483 -14.12432 -13.90503 -13.66131 -13.42033 -13.27526 -13.18954 -13.02131 -12.89272 -12.77536 -12.33584 -12.21496 -12.17238 -11.66230 -11.62379 -11.50782 -11.39189 -11.02659 -10.96954 -10.83351 -10.74939 -10.53711 -10.37446 -10.35135 -10.11629 -9.81064 -9.67562 -9.60256 -9.47950 -9.11000 -8.64956 -6.99341 -5.99409 -3.36383 0.53638 1.87335 1.99209 2.28973 2.65167 3.28569 3.44243 3.46813 3.68814 4.03097 4.15152 4.40268 4.47958 4.49487 4.58766 4.65411 4.71730 4.86726 4.89963 4.99507 5.13386 5.25790 5.29542 5.32218 5.35649 5.37210 5.44275 5.47929 5.52463 5.54846 5.64568 5.71037 5.84945 5.88230 5.90362 5.96754 6.04857 6.09015 6.14130 6.17103 6.19189 6.30240 6.36400 6.55263 6.58222 6.67330 6.69913 6.76660 6.95262 7.51041 7.90423 7.92986 8.28426 8.90183 9.67871 10.06498 11.16613 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017097 B = 0.002544 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.312236 B =11002.767619 C =11964.327566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.057 3.943 3 N -0.266 5.266 4 N -0.047 5.047 5 N -0.379 5.379 6 H 0.454 0.546 7 C -0.067 4.067 8 C 0.596 3.404 9 O -0.514 6.514 10 N -0.601 5.601 11 C 0.088 3.912 12 C -0.132 4.132 13 C -0.078 4.078 14 C -0.100 4.100 15 H 0.071 0.929 16 C -0.104 4.104 17 C -0.136 4.136 18 C 0.126 3.874 19 N -0.606 5.606 20 C -0.261 4.261 21 H 0.083 0.917 22 C 0.024 3.976 23 N -0.909 5.909 24 Si 0.884 3.116 25 H -0.289 1.289 26 H -0.304 1.304 27 H -0.270 1.270 28 C 0.156 3.844 29 C -0.132 4.132 30 C 0.114 3.886 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.023 0.977 45 H 0.263 0.737 46 H 0.020 0.980 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.072 0.928 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 2.289 20.665 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.083 4.083 3 N -0.133 5.133 4 N -0.028 5.028 5 N -0.112 5.112 6 H 0.307 0.693 7 C -0.201 4.201 8 C 0.381 3.619 9 O -0.388 6.388 10 N -0.335 5.335 11 C -0.036 4.036 12 C -0.170 4.170 13 C -0.098 4.098 14 C -0.120 4.120 15 H 0.089 0.911 16 C -0.142 4.142 17 C -0.175 4.175 18 C 0.000 4.000 19 N -0.329 5.329 20 C -0.389 4.389 21 H 0.101 0.899 22 C -0.175 4.175 23 N -0.552 5.552 24 Si 0.714 3.286 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.195 1.195 28 C 0.030 3.970 29 C -0.170 4.170 30 C -0.007 4.007 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.102 0.898 50 H 0.090 0.910 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.852 3.486 20.765 22.841 hybrid contribution 0.765 -2.252 -0.168 2.384 sum -8.087 1.234 20.597 22.162 Atomic orbital electron populations 1.20228 0.84835 1.03995 1.03917 1.22320 0.98602 0.86914 1.00427 1.74963 0.95171 1.25898 1.17297 1.78208 1.15991 0.92524 1.16066 1.46365 1.08911 1.07023 1.48895 0.69263 1.22015 0.85068 0.96452 1.16524 1.16789 0.84121 0.82197 0.78785 1.90844 1.22962 1.79916 1.45095 1.48064 1.18083 1.09090 1.58266 1.22286 0.84494 0.99819 0.96987 1.22034 1.03937 0.97003 0.93988 1.21141 0.96180 0.94716 0.97720 1.21688 1.00517 0.95972 0.93810 0.91066 1.21484 1.00121 0.95608 0.96983 1.21943 0.99893 0.99397 0.96303 1.21234 0.92845 0.86283 0.99607 1.44311 1.76151 1.07132 1.05293 1.18889 1.30384 0.93283 0.96360 0.89896 1.25303 0.98553 0.97783 0.95853 1.69833 1.44478 1.39635 1.01213 0.86913 0.78827 0.84925 0.77929 1.21705 1.23192 1.19482 1.20974 0.92151 0.97418 0.86486 1.22063 0.97901 1.02242 0.94747 1.21762 1.02086 0.79126 0.97726 0.89632 0.90014 0.89769 0.89910 0.90867 0.89270 0.90972 0.90957 0.92765 0.92879 0.92953 0.91893 0.91316 0.95900 0.92753 0.96238 0.92051 0.91272 0.89842 0.90956 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 9.84 36.01 0.35 -0.25 16 2 C 0.06 0.62 7.29 -82.39 -0.60 0.02 16 3 N -0.27 -3.27 12.35 33.51 0.41 -2.85 16 4 N -0.05 -0.52 13.35 60.35 0.81 0.28 16 5 N -0.38 -3.22 5.82 33.31 0.19 -3.02 16 6 H 0.45 2.35 6.36 -190.33 -1.21 1.14 16 7 C -0.07 -0.67 6.53 -82.33 -0.54 -1.21 16 8 C 0.60 6.18 7.54 -12.60 -0.10 6.08 16 9 O -0.51 -6.55 15.32 5.27 0.08 -6.47 16 10 N -0.60 -5.12 2.97 -174.12 -0.52 -5.63 16 11 C 0.09 0.60 5.80 -3.71 -0.02 0.58 16 12 C -0.13 -1.20 5.05 -26.61 -0.13 -1.33 16 13 C -0.08 -0.77 1.74 -90.58 -0.16 -0.93 16 14 C -0.10 -1.38 1.92 -90.50 -0.17 -1.55 16 15 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.10 -1.42 4.86 -26.69 -0.13 -1.55 16 17 C -0.14 -2.27 6.06 -26.83 -0.16 -2.43 16 18 C 0.13 2.64 4.16 -3.93 -0.02 2.62 16 19 N -0.61 -13.70 2.76 -172.59 -0.48 -14.17 16 20 C -0.26 -7.09 10.03 -15.06 -0.15 -7.24 16 21 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 22 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 23 N -0.91 -27.55 13.97 55.49 0.78 -26.77 16 24 Si 0.88 22.04 24.37 -169.99 -4.14 17.90 16 25 H -0.29 -7.01 6.74 56.52 0.38 -6.63 16 26 H -0.30 -7.74 7.11 56.52 0.40 -7.33 16 27 H -0.27 -6.56 6.46 56.52 0.37 -6.19 16 28 C 0.16 2.74 5.27 -3.71 -0.02 2.72 16 29 C -0.13 -1.15 5.05 -26.61 -0.13 -1.28 16 30 C 0.11 0.92 6.42 -3.71 -0.02 0.90 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.73 7.46 -51.93 -0.39 0.34 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.45 3.56 -51.93 -0.18 0.26 16 36 H 0.09 0.84 6.49 -51.93 -0.34 0.50 16 37 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.61 6.33 -51.93 -0.33 0.28 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.61 4.67 -51.93 -0.24 1.36 16 44 H 0.02 0.48 6.96 -51.93 -0.36 0.12 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 1.07 6.52 -51.93 -0.34 0.74 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.69 6.34 -51.93 -0.33 0.36 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.10 0.85 7.02 -51.93 -0.36 0.48 16 LS Contribution 379.79 15.07 5.72 5.72 Total: -1.00 -33.38 379.79 -8.01 -41.39 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -8.77 Total: -2.11 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.09 Total: -4.25 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 1.19 Total: -52.17 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: 0.08 Total: -6.47 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.38 -8.01 -41.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961394185.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.380 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds