Wall clock time and date at job start Wed Apr 1 2020 05:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33323 * 126.81283 * 2 1 4 4 N 1.28520 * 109.43546 * 179.97438 * 3 2 1 5 5 N 1.28709 * 110.63827 * 359.71024 * 4 3 2 6 6 H 0.97003 * 126.03707 * 180.29229 * 5 4 3 7 7 C 1.37008 * 126.81194 * 179.97438 * 2 1 3 8 8 C 1.47230 * 127.18873 * 0.02562 * 7 2 1 9 9 O 1.21608 * 120.00393 * 331.26256 * 8 7 2 10 10 N 1.34784 * 119.99710 * 151.26027 * 8 7 2 11 11 C 1.46924 * 120.62675 * 3.68488 * 10 8 7 12 12 C 1.53196 * 108.77536 * 233.58477 * 11 10 8 13 13 C 1.53045 * 109.31418 * 305.37118 * 12 11 10 14 14 C 1.52997 * 109.46040 * 181.38485 * 13 12 11 15 15 H 1.09000 * 109.49634 * 299.90425 * 14 13 12 16 16 C 1.53038 * 109.49469 * 179.80866 * 14 13 12 17 17 C 1.53044 * 109.53400 * 178.68093 * 16 14 13 18 18 C 1.52759 * 109.38552 * 61.24372 * 17 16 14 19 19 N 1.46932 * 109.00425 * 305.58470 * 18 17 16 20 20 C 1.36930 * 120.62974 * 233.58158 * 19 18 17 21 21 H 1.08000 * 119.99838 * 151.53256 * 20 19 18 22 22 C 1.38817 * 120.00186 * 331.26188 * 20 19 18 23 23 N 1.31618 * 119.99703 * 160.23715 * 22 20 19 24 24 Si 1.86793 * 119.99978 * 340.23827 * 22 20 19 25 25 H 1.48504 * 109.47381 * 95.17492 * 24 22 20 26 26 H 1.48497 * 109.47129 * 215.17790 * 24 22 20 27 27 H 1.48508 * 109.47266 * 335.17589 * 24 22 20 28 28 C 1.46926 * 118.73866 * 53.30865 * 19 18 17 29 29 C 1.53033 * 109.52528 * 61.36683 * 13 12 11 30 30 C 1.46919 * 120.63333 * 183.66318 * 10 8 7 31 31 H 1.09001 * 109.47202 * 270.02882 * 1 2 3 32 32 H 1.08997 * 109.46994 * 30.03132 * 1 2 3 33 33 H 1.08997 * 109.47147 * 150.03009 * 1 2 3 34 34 H 1.09001 * 109.58721 * 113.80306 * 11 10 8 35 35 H 1.08993 * 109.59171 * 353.37275 * 11 10 8 36 36 H 1.08994 * 109.50197 * 185.41383 * 12 11 10 37 37 H 1.09010 * 109.49591 * 65.31866 * 12 11 10 38 38 H 1.09000 * 109.45442 * 301.35725 * 13 12 11 39 39 H 1.08999 * 109.46103 * 298.69770 * 16 14 13 40 40 H 1.08994 * 109.46094 * 58.66413 * 16 14 13 41 41 H 1.09004 * 109.49312 * 181.31833 * 17 16 14 42 42 H 1.09001 * 109.49834 * 301.37824 * 17 16 14 43 43 H 1.08995 * 109.51098 * 185.70232 * 18 17 16 44 44 H 1.08995 * 109.43594 * 65.41519 * 18 17 16 45 45 H 0.97002 * 119.99616 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.58371 * 66.43117 * 28 19 18 47 47 H 1.08997 * 109.58501 * 186.85444 * 28 19 18 48 48 H 1.08997 * 109.50184 * 58.58496 * 29 13 12 49 49 H 1.09007 * 109.49859 * 178.67901 * 29 13 12 50 50 H 1.08995 * 109.58604 * 246.20145 * 30 10 8 51 51 H 1.09005 * 109.58575 * 6.48536 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6835 0.0005 5 7 3.6056 -0.6015 0.0070 6 1 4.4212 -1.1266 0.0127 7 6 2.3279 -1.0969 0.0005 8 6 1.9221 -2.5122 0.0006 9 8 0.8667 -2.8421 0.5066 10 7 2.7205 -3.4421 -0.5602 11 6 4.0343 -3.0715 -1.1036 12 6 4.1235 -3.5585 -2.5533 13 6 3.8231 -5.0584 -2.6028 14 6 3.9452 -5.5553 -4.0447 15 1 3.2328 -5.0226 -4.6746 16 6 3.6497 -7.0561 -4.0944 17 6 3.7393 -7.5476 -5.5410 18 6 5.1539 -7.3154 -6.0687 19 7 5.5052 -5.9000 -5.8891 20 6 5.9472 -5.1513 -6.9470 21 1 5.7726 -4.0856 -6.9646 22 6 6.6245 -5.7610 -7.9940 23 7 6.7086 -5.1601 -9.1620 24 14 7.4166 -7.4343 -7.7454 25 1 6.4847 -8.4961 -8.2031 26 1 8.6749 -7.5079 -8.5305 27 1 7.7199 -7.6293 -6.3048 28 6 5.3674 -5.3018 -4.5543 29 6 2.4023 -5.3125 -2.0944 30 6 2.2937 -4.8457 -0.6394 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8902 -0.5133 34 1 4.8201 -3.5406 -0.5115 35 1 4.1494 -1.9880 -1.0744 36 1 5.1269 -3.3755 -2.9375 37 1 3.3965 -3.0216 -3.1629 38 1 4.5350 -5.5922 -1.9732 39 1 4.3777 -7.5900 -3.4837 40 1 2.6471 -7.2417 -3.7093 41 1 3.5057 -8.6117 -5.5787 42 1 3.0283 -6.9971 -6.1570 43 1 5.1938 -7.5703 -7.1277 44 1 5.8549 -7.9390 -5.5140 45 1 7.1816 -5.5863 -9.8938 46 1 6.0862 -5.7580 -3.8735 47 1 5.5482 -4.2286 -4.6144 48 1 1.6917 -4.7590 -2.7083 49 1 2.1804 -6.3782 -2.1519 50 1 2.9375 -5.4595 -0.0095 51 1 1.2610 -4.9333 -0.3015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961394185.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:53 Heat of formation + Delta-G solvation = 66.192037 kcal Electronic energy + Delta-G solvation = -31670.233743 eV Core-core repulsion = 27606.550016 eV Total energy + Delta-G solvation = -4063.683727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.62498 -41.35493 -39.98367 -38.31264 -35.94787 -35.07336 -34.12876 -33.65409 -32.76484 -31.92388 -31.03355 -29.01135 -27.23817 -26.78463 -25.09723 -24.94626 -23.68989 -23.27308 -22.72590 -21.72854 -20.83233 -20.67872 -19.09741 -18.71648 -18.16239 -17.59881 -17.37212 -17.21519 -16.28446 -15.99851 -15.53219 -15.45668 -15.36774 -15.00245 -14.94194 -14.85731 -14.63411 -14.43013 -14.14224 -14.09914 -13.89109 -13.64682 -13.56745 -13.34300 -13.18937 -13.05688 -12.83909 -12.51042 -12.37815 -12.32838 -12.18857 -11.95508 -11.79362 -11.64202 -11.59651 -11.50630 -11.37617 -11.28622 -11.16491 -10.82611 -10.62052 -10.46949 -9.81027 -8.87317 -8.17745 -5.49404 -0.24283 1.05989 1.28279 1.29227 1.39502 1.49012 1.54492 1.93846 2.41100 2.97717 3.05537 3.28841 3.36877 3.50299 3.65863 3.72106 3.82403 3.90845 4.02410 4.11110 4.16864 4.21692 4.31387 4.37603 4.47724 4.52093 4.56026 4.63953 4.66688 4.71946 4.74223 4.80860 4.86042 4.86547 4.90665 5.01304 5.05719 5.06709 5.16525 5.16739 5.20560 5.24585 5.29578 5.33821 5.48221 5.51023 5.54038 5.70672 5.87653 6.04750 6.12299 6.75286 6.94183 7.09366 7.64431 8.05187 9.02542 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017097 B = 0.002544 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.312236 B =11002.767619 C =11964.327566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.044 3.956 3 N -0.293 5.293 4 N -0.061 5.061 5 N -0.358 5.358 6 H 0.468 0.532 7 C -0.068 4.068 8 C 0.597 3.403 9 O -0.541 6.541 10 N -0.596 5.596 11 C 0.091 3.909 12 C -0.132 4.132 13 C -0.069 4.069 14 C -0.089 4.089 15 H 0.045 0.955 16 C -0.100 4.100 17 C -0.132 4.132 18 C 0.118 3.882 19 N -0.622 5.622 20 C -0.245 4.245 21 H 0.047 0.953 22 C -0.038 4.038 23 N -0.961 5.961 24 Si 0.949 3.051 25 H -0.280 1.280 26 H -0.313 1.313 27 H -0.255 1.255 28 C 0.151 3.849 29 C -0.124 4.124 30 C 0.116 3.884 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.044 0.956 43 H 0.039 0.961 44 H 0.034 0.966 45 H 0.260 0.740 46 H 0.037 0.963 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.098 0.902 50 H 0.098 0.902 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.105 0.024 23.775 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 N -0.159 5.159 4 N -0.042 5.042 5 N -0.093 5.093 6 H 0.324 0.676 7 C -0.203 4.203 8 C 0.383 3.617 9 O -0.417 6.417 10 N -0.328 5.328 11 C -0.031 4.031 12 C -0.170 4.170 13 C -0.088 4.088 14 C -0.109 4.109 15 H 0.064 0.936 16 C -0.137 4.137 17 C -0.171 4.171 18 C -0.006 4.006 19 N -0.347 5.347 20 C -0.375 4.375 21 H 0.065 0.935 22 C -0.233 4.233 23 N -0.607 5.607 24 Si 0.779 3.221 25 H -0.207 1.207 26 H -0.243 1.243 27 H -0.179 1.179 28 C 0.026 3.974 29 C -0.162 4.162 30 C -0.005 4.005 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.135 0.865 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.116 0.884 50 H 0.116 0.884 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.884 1.198 23.922 25.546 hybrid contribution 0.744 -1.493 -1.153 2.028 sum -8.140 -0.294 22.768 24.182 Atomic orbital electron populations 1.20282 0.83684 1.04292 1.04541 1.22730 0.99621 0.86938 1.00351 1.74939 0.95677 1.26840 1.18470 1.78141 1.15825 0.93516 1.16708 1.46352 1.09183 1.06416 1.47398 0.67550 1.22034 0.85401 0.96381 1.16451 1.16782 0.83889 0.82297 0.78782 1.90833 1.24074 1.80237 1.46549 1.48134 1.18262 1.09128 1.57323 1.22387 0.84532 1.00441 0.95785 1.21987 1.03072 0.96642 0.95284 1.21064 0.97629 0.94984 0.95102 1.21513 0.96942 0.96598 0.95874 0.93643 1.21499 1.02434 0.94791 0.94984 1.21879 0.96222 1.01024 0.97972 1.21312 0.95874 0.85167 0.98292 1.44486 1.76320 1.07756 1.06095 1.18838 1.28864 0.92329 0.97491 0.93484 1.25960 0.99845 1.01884 0.95581 1.69976 1.46540 1.41969 1.02266 0.85842 0.77212 0.80809 0.78283 1.20658 1.24266 1.17871 1.21202 0.95042 0.96777 0.84359 1.21991 0.96429 1.02901 0.94877 1.21835 1.02420 0.78852 0.97414 0.88811 0.89069 0.90046 0.86510 0.90440 0.89608 0.93122 0.88763 0.91119 0.89871 0.90331 0.93724 0.94300 0.94842 0.93064 0.94518 0.93013 0.92997 0.88391 0.88427 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 9.84 71.24 0.70 -0.45 16 2 C 0.04 0.93 7.29 42.04 0.31 1.24 16 3 N -0.29 -7.09 12.35 -47.88 -0.59 -7.68 16 4 N -0.06 -1.31 13.35 37.02 0.49 -0.82 16 5 N -0.36 -5.52 5.82 -48.52 -0.28 -5.80 16 6 H 0.47 3.72 6.36 -219.90 -1.40 2.32 16 7 C -0.07 -1.29 6.53 40.41 0.26 -1.02 16 8 C 0.60 11.29 7.54 86.61 0.65 11.94 16 9 O -0.54 -13.02 15.32 -4.06 -0.06 -13.09 16 10 N -0.60 -8.40 2.97 -823.03 -2.45 -10.84 16 11 C 0.09 0.95 5.80 86.36 0.50 1.45 16 12 C -0.13 -2.11 5.05 30.68 0.15 -1.95 16 13 C -0.07 -1.11 1.74 -10.77 -0.02 -1.13 16 14 C -0.09 -2.25 1.92 -10.72 -0.02 -2.27 16 15 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 16 C -0.10 -2.30 4.86 30.62 0.15 -2.16 16 17 C -0.13 -4.05 6.06 30.53 0.19 -3.86 16 18 C 0.12 4.76 4.16 86.22 0.36 5.12 16 19 N -0.62 -27.85 2.76 -699.94 -1.93 -29.78 16 20 C -0.25 -13.71 10.03 84.04 0.84 -12.87 16 21 H 0.05 2.90 8.06 -2.91 -0.02 2.87 16 22 C -0.04 -2.23 5.23 84.86 0.44 -1.79 16 23 N -0.96 -60.63 13.97 21.65 0.30 -60.33 16 24 Si 0.95 46.16 24.37 68.60 1.67 47.83 16 25 H -0.28 -12.99 6.74 99.48 0.67 -12.32 16 26 H -0.31 -15.59 7.11 99.48 0.71 -14.89 16 27 H -0.25 -11.57 6.46 99.48 0.64 -10.92 16 28 C 0.15 5.06 5.27 86.36 0.46 5.52 16 29 C -0.12 -1.73 5.05 30.67 0.15 -1.57 16 30 C 0.12 1.44 6.42 86.36 0.55 1.99 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.39 7.46 -2.39 -0.02 1.37 16 34 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.74 3.56 -2.39 -0.01 0.74 16 36 H 0.09 1.46 6.49 -2.39 -0.02 1.44 16 37 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.49 6.33 -2.39 -0.02 1.48 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.04 1.79 4.67 -2.39 -0.01 1.78 16 44 H 0.03 1.29 6.96 -2.39 -0.02 1.27 16 45 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.05 1.80 6.52 -2.39 -0.02 1.79 16 48 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.10 1.13 6.34 -2.38 -0.02 1.11 16 50 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.09 1.31 7.02 -2.38 -0.02 1.29 16 Total: -1.00 -75.94 379.79 2.30 -73.64 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -0.54 Total: 8.68 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.69 Total: -1.81 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -4.45 Total: -115.25 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.06 Total: -13.09 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.67 Total: 47.83 kcal Total: -75.94 2.30 -73.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961394185.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.831 kcal (2) G-P(sol) polarization free energy of solvation -75.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds