Wall clock time and date at job start Wed Apr 1 2020 05:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36592 * 126.58163 * 2 1 4 4 C 1.47520 * 125.76927 * 0.03324 * 3 2 1 5 5 O 1.21591 * 120.00356 * 354.38085 * 4 3 2 6 6 N 1.34783 * 119.99911 * 174.38348 * 4 3 2 7 7 C 1.46930 * 120.62899 * 353.47399 * 6 4 3 8 8 C 1.53195 * 108.77437 * 233.59107 * 7 6 4 9 9 C 1.53040 * 109.31090 * 305.36530 * 8 7 6 10 10 C 1.53038 * 109.54071 * 61.36382 * 9 8 7 11 11 H 1.09003 * 109.49351 * 58.58483 * 10 9 8 12 12 C 1.53000 * 109.50104 * 178.68031 * 10 9 8 13 13 H 1.08999 * 109.87585 * 304.92202 * 12 10 9 14 14 C 1.54321 * 109.88546 * 183.73850 * 12 10 9 15 15 C 1.55153 * 102.94473 * 218.39305 * 14 12 10 16 16 C 1.54904 * 101.58168 * 35.50229 * 15 14 12 17 17 N 1.47028 * 109.87832 * 65.93321 * 12 10 9 18 18 C 1.36940 * 125.64914 * 298.32336 * 17 12 10 19 19 H 1.07998 * 119.99829 * 141.94785 * 18 17 12 20 20 C 1.38817 * 119.99760 * 321.94778 * 18 17 12 21 21 N 1.31617 * 119.99868 * 166.55208 * 20 18 17 22 22 Si 1.86801 * 120.00090 * 346.55074 * 20 18 17 23 23 H 1.48498 * 109.47095 * 93.01505 * 22 20 18 24 24 H 1.48503 * 109.46772 * 213.01877 * 22 20 18 25 25 H 1.48496 * 109.46912 * 333.01477 * 22 20 18 26 26 C 1.46922 * 120.63118 * 173.45368 * 6 4 3 27 27 N 1.34404 * 108.45734 * 179.77131 * 3 2 1 28 28 N 1.28760 * 109.52213 * 0.22517 * 27 3 2 29 29 N 1.34815 * 126.57664 * 180.16105 * 2 1 3 30 30 C 1.46497 * 126.59654 * 0.02562 * 29 2 1 31 31 H 1.09002 * 109.47113 * 90.00173 * 1 2 3 32 32 H 1.08999 * 109.47417 * 209.99850 * 1 2 3 33 33 H 1.09004 * 109.47179 * 330.00465 * 1 2 3 34 34 H 1.08990 * 109.58876 * 113.80153 * 7 6 4 35 35 H 1.08999 * 109.58793 * 353.37593 * 7 6 4 36 36 H 1.09000 * 109.49716 * 185.41199 * 8 7 6 37 37 H 1.09004 * 109.49931 * 65.31642 * 8 7 6 38 38 H 1.09003 * 109.46049 * 181.38730 * 9 8 7 39 39 H 1.09004 * 109.45863 * 301.34547 * 9 8 7 40 40 H 1.09002 * 110.71778 * 336.76056 * 14 12 10 41 41 H 1.09005 * 110.71435 * 100.02695 * 14 12 10 42 42 H 1.09001 * 111.00677 * 277.43170 * 15 14 12 43 43 H 1.08999 * 111.00536 * 153.58106 * 15 14 12 44 44 H 1.09004 * 110.36967 * 204.15070 * 16 15 14 45 45 H 1.09001 * 110.45966 * 81.87721 * 16 15 14 46 46 H 0.96993 * 120.00143 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.58740 * 246.19861 * 26 6 4 48 48 H 1.08996 * 109.58546 * 6.48059 * 26 6 4 49 49 H 1.08997 * 109.47592 * 270.26936 * 30 29 2 50 50 H 1.08995 * 109.47297 * 30.27183 * 30 29 2 51 51 H 1.09006 * 109.47339 * 150.26839 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8738 2.5026 0.0007 5 8 0.6908 2.7643 -0.1018 6 7 2.7765 3.4969 0.1149 7 6 4.1900 3.1977 0.3820 8 6 4.6386 3.9939 1.6115 9 6 4.3416 5.4786 1.3891 10 6 2.8350 5.6777 1.2081 11 1 2.3110 5.3101 2.0904 12 6 2.5357 7.1661 1.0186 13 1 2.9471 7.7358 1.8518 14 6 1.0111 7.3876 0.9290 15 6 0.8833 8.4912 -0.1540 16 6 2.0333 8.1131 -1.1205 17 7 3.1201 7.6366 -0.2458 18 6 4.4533 7.6335 -0.5587 19 1 4.7717 7.3940 -1.5625 20 6 5.3953 7.9382 0.4143 21 7 6.6686 7.6829 0.2003 22 14 4.8558 8.7106 2.0273 23 1 4.6210 7.6435 3.0329 24 1 5.9169 9.6271 2.5165 25 1 3.6007 9.4752 1.8146 26 6 2.3659 4.9006 -0.0259 27 7 3.5984 0.6787 0.0051 28 7 3.6298 -0.6085 0.0035 29 7 2.3104 -1.0826 -0.0030 30 6 1.8863 -2.4849 -0.0075 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8901 0.5138 34 1 4.7933 3.4846 -0.4792 35 1 4.3077 2.1313 0.5743 36 1 5.7091 3.8558 1.7636 37 1 4.0976 3.6422 2.4900 38 1 4.6824 6.0504 2.2523 39 1 4.8633 5.8235 0.4963 40 1 0.5068 6.4750 0.6112 41 1 0.6153 7.7359 1.8831 42 1 1.0430 9.4803 0.2752 43 1 -0.0828 8.4361 -0.6558 44 1 2.3568 8.9872 -1.6856 45 1 1.7165 7.3202 -1.7980 46 1 7.3268 7.8955 0.8802 47 1 2.8205 5.3263 -0.9204 48 1 1.2803 4.9575 -0.1053 49 1 1.7761 -2.8345 1.0190 50 1 0.9318 -2.5742 -0.5262 51 1 2.6355 -3.0895 -0.5188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963276523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:59 Heat of formation + Delta-G solvation = 89.071733 kcal Electronic energy + Delta-G solvation = -32975.663077 eV Core-core repulsion = 28912.971489 eV Total energy + Delta-G solvation = -4062.691589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.38715 -41.25132 -39.80459 -37.76369 -35.97294 -34.81204 -33.88835 -33.29549 -32.31947 -31.72187 -29.59349 -28.40769 -28.25997 -26.64081 -26.20435 -24.13951 -24.04555 -22.34181 -21.87943 -21.60615 -21.12402 -20.29698 -18.62875 -18.36785 -17.63219 -17.49036 -17.22446 -16.74359 -16.36944 -16.00194 -15.54959 -15.38623 -15.17993 -15.09950 -14.87331 -14.69628 -14.39865 -14.25844 -14.15163 -13.97002 -13.86659 -13.56490 -13.48509 -13.38606 -13.23222 -13.08334 -12.83313 -12.67035 -12.42320 -12.22777 -12.09307 -12.01105 -11.90454 -11.75036 -11.59265 -11.32307 -11.19703 -11.12975 -10.82213 -10.68333 -10.31863 -10.24010 -9.55632 -8.61655 -8.12265 -5.49504 0.10001 0.54315 1.13493 1.30786 1.40021 1.48647 1.98320 2.17258 2.44426 3.09951 3.15800 3.36253 3.43279 3.62856 3.66703 3.80812 3.93400 4.10885 4.11587 4.17957 4.22145 4.25475 4.33250 4.35461 4.47080 4.51998 4.62313 4.64037 4.67258 4.67921 4.73695 4.80328 4.83860 4.89349 4.99732 5.04773 5.06584 5.12577 5.16616 5.17950 5.23734 5.27719 5.30643 5.41457 5.50881 5.52994 5.64469 5.85351 6.06810 6.24134 6.40020 6.81793 6.92868 7.09954 7.62343 8.31083 9.06749 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.003544 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.194203 B = 7899.687199 C = 8931.261743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.135 3.865 3 C -0.130 4.130 4 C 0.598 3.402 5 O -0.561 6.561 6 N -0.594 5.594 7 C 0.095 3.905 8 C -0.122 4.122 9 C -0.140 4.140 10 C -0.091 4.091 11 H 0.062 0.938 12 C 0.141 3.859 13 H 0.017 0.983 14 C -0.124 4.124 15 C -0.122 4.122 16 C 0.122 3.878 17 N -0.614 5.614 18 C -0.226 4.226 19 H 0.045 0.955 20 C 0.010 3.990 21 N -0.943 5.943 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.320 1.320 25 H -0.266 1.266 26 C 0.143 3.857 27 N -0.225 5.225 28 N -0.094 5.094 29 N -0.350 5.350 30 C 0.072 3.928 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.135 0.865 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.040 0.960 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.059 0.941 48 H 0.089 0.911 49 H 0.110 0.890 50 H 0.129 0.871 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.471 -19.915 1.984 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.004 4.004 3 C -0.270 4.270 4 C 0.386 3.614 5 O -0.440 6.440 6 N -0.324 5.324 7 C -0.028 4.028 8 C -0.160 4.160 9 C -0.177 4.177 10 C -0.112 4.112 11 H 0.080 0.920 12 C 0.035 3.965 13 H 0.035 0.965 14 C -0.162 4.162 15 C -0.161 4.161 16 C -0.003 4.003 17 N -0.340 5.340 18 C -0.355 4.355 19 H 0.062 0.938 20 C -0.188 4.188 21 N -0.588 5.588 22 Si 0.762 3.238 23 H -0.195 1.195 24 H -0.249 1.249 25 H -0.192 1.192 26 C 0.021 3.979 27 N -0.098 5.098 28 N -0.073 5.073 29 N -0.136 5.136 30 C -0.067 4.067 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.152 0.848 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.107 0.893 49 H 0.128 0.872 50 H 0.147 0.853 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.357 -20.250 1.935 25.488 hybrid contribution 0.162 1.042 0.811 1.330 sum -15.195 -19.208 2.745 24.645 Atomic orbital electron populations 1.20815 0.81925 1.06274 1.05772 1.22321 0.97498 0.85462 0.95136 1.21237 0.89626 0.95442 1.20674 1.17024 0.84981 0.83122 0.76287 1.90687 1.16158 1.83840 1.53338 1.48019 1.09246 1.06471 1.68641 1.22455 0.79770 1.03520 0.97094 1.21833 1.01005 0.95645 0.97552 1.22143 0.96723 0.95267 1.03610 1.21675 0.96190 0.96331 0.96999 0.91985 1.21390 0.94015 0.91798 0.89253 0.96526 1.22660 0.93367 0.99952 1.00187 1.22703 0.98827 0.97924 0.96602 1.21893 0.88384 0.96503 0.93489 1.44747 1.01979 1.72018 1.15294 1.18135 0.80385 1.40326 0.96691 0.93767 1.25711 0.94572 0.97925 1.00554 1.69883 1.01669 1.51228 1.35999 0.86331 0.76253 0.78756 0.82448 1.19465 1.24944 1.19155 1.21438 1.00193 0.78268 0.98006 1.74284 1.19574 1.04422 1.11471 1.81905 0.98193 1.03336 1.23836 1.50607 1.05089 1.09389 1.48564 1.22743 1.04214 0.73000 1.06713 0.87597 0.86664 0.88966 0.93255 0.84819 0.91185 0.92252 0.94690 0.88476 0.89814 0.89983 0.92030 0.88285 0.94166 0.94968 0.93006 0.92233 0.89301 0.87176 0.85287 0.87097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.14 9.32 71.24 0.66 -0.47 16 2 C 0.14 2.81 7.02 41.72 0.29 3.10 16 3 C -0.13 -3.87 6.72 40.81 0.27 -3.60 16 4 C 0.60 20.64 7.68 86.69 0.67 21.30 16 5 O -0.56 -19.82 14.21 -4.00 -0.06 -19.88 16 6 N -0.59 -22.07 2.97 -822.69 -2.45 -24.52 16 7 C 0.09 3.54 6.12 86.36 0.53 4.06 16 8 C -0.12 -4.69 6.08 30.67 0.19 -4.51 16 9 C -0.14 -6.30 3.55 30.62 0.11 -6.19 16 10 C -0.09 -3.68 2.15 -10.72 -0.02 -3.70 16 11 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 12 C 0.14 5.87 2.11 45.34 0.10 5.96 16 13 H 0.02 0.79 3.37 -2.39 -0.01 0.78 16 14 C -0.12 -3.98 6.30 31.78 0.20 -3.78 16 15 C -0.12 -3.76 7.08 31.98 0.23 -3.53 16 16 C 0.12 4.68 7.23 86.85 0.63 5.31 16 17 N -0.61 -28.39 1.60 -668.25 -1.07 -29.47 16 18 C -0.23 -12.48 8.40 84.03 0.71 -11.78 16 19 H 0.04 2.74 8.06 -2.91 -0.02 2.72 16 20 C 0.01 0.54 3.42 84.86 0.29 0.83 16 21 N -0.94 -57.27 13.97 21.65 0.30 -56.97 16 22 Si 0.93 47.00 22.93 68.60 1.57 48.57 16 23 H -0.27 -13.00 5.70 99.48 0.57 -12.43 16 24 H -0.32 -16.66 7.11 99.48 0.71 -15.95 16 25 H -0.27 -13.05 6.77 99.48 0.67 -12.37 16 26 C 0.14 5.56 5.29 86.36 0.46 6.02 16 27 N -0.23 -7.07 8.74 -50.00 -0.44 -7.51 16 28 N -0.09 -2.51 13.78 37.02 0.51 -2.00 16 29 N -0.35 -6.23 4.03 -355.11 -1.43 -7.66 16 30 C 0.07 0.33 11.17 127.77 1.43 1.76 16 31 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.11 0.49 7.84 -2.39 -0.02 0.47 16 33 H 0.09 1.64 6.56 -2.39 -0.02 1.62 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.14 4.70 4.03 -51.99 -0.21 4.49 16 36 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.03 1.67 5.00 -2.39 -0.01 1.66 16 39 H 0.10 5.12 4.47 -2.38 -0.01 5.11 16 40 H 0.08 2.51 6.09 -2.39 -0.01 2.50 16 41 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 47 H 0.06 2.64 7.22 -2.39 -0.02 2.63 16 48 H 0.09 3.30 5.35 -2.39 -0.01 3.28 16 49 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 50 H 0.13 -0.19 7.78 -2.39 -0.02 -0.21 16 51 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 Total: -1.00 -74.19 373.23 4.25 -69.94 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.58 Total: 18.70 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 6.73 Total: 10.79 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -4.57 Total: -128.12 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.06 Total: -19.88 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.57 Total: 48.57 kcal Total: -74.19 4.25 -69.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963276523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.008 kcal (2) G-P(sol) polarization free energy of solvation -74.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds