Wall clock time and date at job start Wed Apr 1 2020 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30829 * 125.96674 * 2 1 4 4 C 1.33233 * 109.82992 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52531 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46676 * 90.00250 * 5 4 3 7 7 O 1.21279 * 120.00438 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99867 * 180.02562 * 6 5 4 9 9 C 1.46924 * 120.63014 * 359.97438 * 8 6 5 10 10 C 1.53191 * 108.77649 * 233.58732 * 9 8 6 11 11 C 1.53042 * 109.31265 * 305.36761 * 10 9 8 12 12 C 1.53038 * 109.53872 * 61.36052 * 11 10 9 13 13 H 1.09005 * 109.49323 * 58.62505 * 12 11 10 14 14 C 1.53007 * 109.49707 * 178.68225 * 12 11 10 15 15 H 1.09002 * 109.87214 * 307.09265 * 14 12 11 16 16 C 1.54321 * 109.87877 * 186.07185 * 14 12 11 17 17 C 1.55156 * 102.94004 * 218.38779 * 16 14 12 18 18 C 1.54908 * 101.57907 * 35.50887 * 17 16 14 19 19 N 1.47025 * 109.87748 * 68.26783 * 14 12 11 20 20 C 1.36939 * 125.64939 * 298.32999 * 19 14 12 21 21 H 1.08001 * 119.99626 * 138.20502 * 20 19 14 22 22 C 1.38807 * 120.00178 * 318.21172 * 20 19 14 23 23 N 1.31614 * 120.00233 * 167.17087 * 22 20 19 24 24 Si 1.86810 * 119.99926 * 347.16714 * 22 20 19 25 25 H 1.48505 * 109.46721 * 85.50630 * 24 22 20 26 26 H 1.48493 * 109.47144 * 205.50431 * 24 22 20 27 27 H 1.48498 * 109.47236 * 325.50819 * 24 22 20 28 28 C 1.46924 * 120.62800 * 179.71693 * 8 6 5 29 29 N 1.30706 * 108.95055 * 0.26387 * 4 3 2 30 30 N 1.34434 * 125.95885 * 180.02562 * 2 1 3 31 31 H 0.96998 * 126.82021 * 359.97132 * 30 2 1 32 32 H 1.09005 * 109.47192 * 89.97798 * 1 2 3 33 33 H 1.08996 * 109.47456 * 209.97682 * 1 2 3 34 34 H 1.09004 * 109.47267 * 329.98083 * 1 2 3 35 35 H 1.08993 * 109.47369 * 209.99735 * 5 4 3 36 36 H 1.09000 * 109.47363 * 330.00836 * 5 4 3 37 37 H 1.08997 * 109.58666 * 353.37613 * 9 8 6 38 38 H 1.09003 * 109.58712 * 113.79941 * 9 8 6 39 39 H 1.08997 * 109.49819 * 65.31875 * 10 9 8 40 40 H 1.08997 * 109.49896 * 185.38287 * 10 9 8 41 41 H 1.08995 * 109.46182 * 181.39127 * 11 10 9 42 42 H 1.09007 * 109.45626 * 301.35564 * 11 10 9 43 43 H 1.08994 * 110.72608 * 336.75571 * 16 14 12 44 44 H 1.09008 * 110.71889 * 100.03150 * 16 14 12 45 45 H 1.09000 * 111.00068 * 153.57769 * 17 16 14 46 46 H 1.08992 * 111.00751 * 277.43087 * 17 16 14 47 47 H 1.08997 * 110.36958 * 81.82759 * 18 17 16 48 48 H 1.09006 * 110.36503 * 204.03653 * 18 17 16 49 49 H 0.97006 * 120.00383 * 179.97438 * 23 22 20 50 50 H 1.08995 * 109.58825 * 246.19773 * 28 8 6 51 51 H 1.09000 * 109.58775 * 6.63067 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5552 0.6886 -0.0006 5 6 4.7373 1.6234 -0.0013 6 6 5.1319 1.9351 1.4194 7 8 4.5139 1.4467 2.3416 8 7 6.1711 2.7575 1.6651 9 6 6.9290 3.3572 0.5585 10 6 8.4162 3.0456 0.7536 11 6 8.8539 3.5157 2.1427 12 6 8.0583 2.7633 3.2118 13 1 8.2234 1.6915 3.1011 14 6 8.5197 3.2102 4.6006 15 1 9.6024 3.1128 4.6804 16 6 7.8340 2.3504 5.6832 17 6 7.5406 3.3776 6.8084 18 6 7.2058 4.6490 5.9892 19 7 8.1214 4.6060 4.8345 20 6 8.5332 5.6870 4.1017 21 1 7.8266 6.4586 3.8339 22 6 9.8587 5.7910 3.7030 23 7 10.2058 6.6812 2.7978 24 14 11.1501 4.6675 4.4513 25 1 11.1849 3.3857 3.7021 26 1 12.4806 5.3223 4.3741 27 1 10.8111 4.4012 5.8723 28 6 6.5639 3.0757 3.0446 29 7 3.6194 -0.6169 -0.0066 30 7 2.2964 -1.0882 -0.0005 31 1 2.0092 -2.0147 -0.0005 32 1 -0.3634 0.0004 -1.0277 33 1 -0.3634 -0.8901 0.5134 34 1 -0.3634 0.8898 0.5141 35 1 5.5740 1.1507 -0.5154 36 1 4.4699 2.5468 -0.5150 37 1 6.5886 2.9367 -0.3877 38 1 6.7792 4.4369 0.5558 39 1 8.5774 1.9713 0.6656 40 1 8.9994 3.5645 -0.0071 41 1 9.9175 3.3176 2.2747 42 1 8.6692 4.5857 2.2388 43 1 6.9078 1.9189 5.3037 44 1 8.5067 1.5700 6.0393 45 1 6.6873 3.0647 7.4101 46 1 8.4200 3.5353 7.4326 47 1 6.1695 4.6216 5.6527 48 1 7.3867 5.5432 6.5857 49 1 11.1322 6.7541 2.5195 50 1 6.3849 4.1328 3.2409 51 1 5.9826 2.4693 3.7392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963304121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:00 Heat of formation + Delta-G solvation = 55.314521 kcal Electronic energy + Delta-G solvation = -32320.625619 eV Core-core repulsion = 28256.470207 eV Total energy + Delta-G solvation = -4064.155411 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.18266 -41.39075 -39.92416 -37.72855 -34.80761 -34.75070 -33.90216 -33.36017 -32.35604 -31.74601 -31.00115 -28.87161 -28.31855 -26.42876 -26.07751 -24.07613 -22.92165 -22.13676 -21.71018 -21.63255 -20.91336 -19.86195 -18.86070 -18.58422 -18.26047 -17.59207 -16.99943 -16.50644 -16.47409 -16.23364 -15.41945 -15.31829 -15.22243 -15.10189 -15.04670 -14.66061 -14.34387 -14.17967 -14.06347 -13.66982 -13.63375 -13.59540 -13.47069 -13.16032 -13.10285 -12.88429 -12.81838 -12.73420 -12.43759 -12.16755 -12.13478 -11.88096 -11.80557 -11.70878 -11.45857 -11.28123 -11.14845 -11.10385 -10.85698 -10.81264 -10.43872 -10.32651 -9.58372 -8.56502 -8.12880 -5.54879 0.55680 1.30893 1.40315 1.48706 1.58436 1.61423 1.74321 2.19473 2.44344 2.98940 3.14852 3.40580 3.50349 3.57475 3.81862 3.89554 3.90400 4.07907 4.11164 4.16987 4.23453 4.28352 4.34442 4.37997 4.47317 4.52381 4.64996 4.70542 4.71186 4.75107 4.77326 4.87828 4.92456 4.99781 5.04675 5.06834 5.12546 5.16921 5.18883 5.23909 5.27355 5.28061 5.33716 5.40413 5.48743 5.60452 5.87724 6.08004 6.21483 6.25491 6.46463 6.92396 7.06710 7.12485 7.60487 8.31877 9.05517 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017747 B = 0.003001 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.348778 B = 9328.160835 C =10053.480936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.286 3.714 3 N -0.569 5.569 4 C 0.238 3.762 5 C -0.044 4.044 6 C 0.520 3.480 7 O -0.585 6.585 8 N -0.604 5.604 9 C 0.108 3.892 10 C -0.126 4.126 11 C -0.137 4.137 12 C -0.089 4.089 13 H 0.059 0.941 14 C 0.141 3.859 15 H 0.019 0.981 16 C -0.126 4.126 17 C -0.124 4.124 18 C 0.122 3.878 19 N -0.613 5.613 20 C -0.226 4.226 21 H 0.045 0.955 22 C 0.017 3.983 23 N -0.939 5.939 24 Si 0.927 3.073 25 H -0.264 1.264 26 H -0.317 1.317 27 H -0.276 1.276 28 C 0.145 3.855 29 N -0.337 5.337 30 N -0.475 5.475 31 H 0.455 0.545 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.032 0.968 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.062 0.938 47 H 0.029 0.971 48 H 0.041 0.959 49 H 0.262 0.738 50 H 0.061 0.939 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.473 -15.750 -7.674 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.008 3.992 3 N -0.300 5.300 4 C -0.045 4.045 5 C -0.086 4.086 6 C 0.308 3.692 7 O -0.465 6.465 8 N -0.335 5.335 9 C -0.013 4.013 10 C -0.164 4.164 11 C -0.174 4.174 12 C -0.110 4.110 13 H 0.077 0.923 14 C 0.035 3.965 15 H 0.036 0.964 16 C -0.164 4.164 17 C -0.162 4.162 18 C -0.003 4.003 19 N -0.339 5.339 20 C -0.355 4.355 21 H 0.063 0.937 22 C -0.181 4.181 23 N -0.583 5.583 24 Si 0.758 3.242 25 H -0.191 1.191 26 H -0.247 1.247 27 H -0.202 1.202 28 C 0.022 3.978 29 N -0.167 5.167 30 N -0.195 5.195 31 H 0.304 0.696 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.050 0.950 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.113 0.887 46 H 0.081 0.919 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.079 -15.879 -7.340 23.095 hybrid contribution 1.098 -0.565 0.515 1.338 sum -13.981 -16.444 -6.825 22.637 Atomic orbital electron populations 1.20645 0.80000 1.06331 1.06261 1.25259 0.98330 0.81974 0.93658 1.70291 1.01650 1.31447 1.26597 1.23564 0.93310 0.90051 0.97582 1.20038 0.94144 0.99865 0.94535 1.20659 0.79315 0.77748 0.91445 1.90657 1.54377 1.53693 1.47780 1.48210 1.30844 1.46200 1.08264 1.21957 0.91116 0.98813 0.89445 1.21868 0.95780 1.01375 0.97375 1.22001 0.97399 1.03890 0.94155 1.21714 0.94824 0.98072 0.96389 0.92256 1.21363 0.95815 0.85641 0.93659 0.96409 1.22650 1.00839 0.97399 0.95475 1.22704 1.01837 0.94961 0.96744 1.21877 0.93252 0.96961 0.88180 1.44723 1.55354 1.01186 1.32641 1.18090 0.91557 0.99188 1.26633 0.93741 1.25752 0.97877 0.97042 0.97462 1.69861 1.18121 1.38112 1.32171 0.86321 0.78440 0.79358 0.80043 1.19075 1.24656 1.20218 1.21371 0.94259 1.00259 0.81902 1.77850 0.98864 1.12401 1.27535 1.47852 1.03208 1.10975 1.57451 0.69629 0.86686 0.87047 0.88605 0.84005 0.83863 0.86121 0.91486 0.91409 0.89984 0.94974 0.88733 0.90604 0.90188 0.88749 0.91948 0.95286 0.94048 0.92851 0.92116 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.51 71.24 0.75 0.17 16 2 C 0.29 5.59 8.24 138.22 1.14 6.73 16 3 N -0.57 -15.78 11.19 -179.73 -2.01 -17.79 16 4 C 0.24 6.81 6.63 138.64 0.92 7.73 16 5 C -0.04 -1.08 4.68 29.10 0.14 -0.94 16 6 C 0.52 17.11 7.69 87.66 0.67 17.78 16 7 O -0.58 -24.11 15.45 -3.03 -0.05 -24.15 16 8 N -0.60 -19.69 2.97 -818.14 -2.43 -22.11 16 9 C 0.11 2.94 6.34 86.36 0.55 3.49 16 10 C -0.13 -3.83 6.08 30.67 0.19 -3.64 16 11 C -0.14 -5.56 3.66 30.62 0.11 -5.44 16 12 C -0.09 -3.45 2.11 -10.58 -0.02 -3.47 16 13 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 14 C 0.14 5.81 2.10 45.34 0.10 5.91 16 15 H 0.02 0.83 3.56 -2.39 -0.01 0.82 16 16 C -0.13 -4.23 6.31 31.78 0.20 -4.02 16 17 C -0.12 -4.00 7.09 31.99 0.23 -3.77 16 18 C 0.12 4.77 7.23 86.86 0.63 5.40 16 19 N -0.61 -27.97 1.49 -668.26 -0.99 -28.97 16 20 C -0.23 -12.06 8.19 84.03 0.69 -11.37 16 21 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 22 C 0.02 0.91 3.57 84.86 0.30 1.22 16 23 N -0.94 -54.65 13.97 21.65 0.30 -54.35 16 24 Si 0.93 45.77 23.34 68.60 1.60 47.37 16 25 H -0.26 -12.40 5.57 99.48 0.55 -11.84 16 26 H -0.32 -16.11 7.11 99.48 0.71 -15.40 16 27 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 28 C 0.14 5.51 5.30 86.50 0.46 5.96 16 29 N -0.34 -9.35 12.80 -51.34 -0.66 -10.00 16 30 N -0.47 -9.14 7.45 -50.71 -0.38 -9.52 16 31 H 0.46 4.82 8.96 -213.10 -1.91 2.91 16 32 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.14 2.64 7.69 -2.39 -0.02 2.62 16 36 H 0.14 2.79 7.94 -2.39 -0.02 2.77 16 37 H 0.12 2.18 5.93 -2.39 -0.01 2.16 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.03 1.40 5.68 -2.39 -0.01 1.39 16 42 H 0.09 4.56 4.55 -2.38 -0.01 4.55 16 43 H 0.08 2.48 6.25 -2.39 -0.01 2.47 16 44 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 49 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 50 H 0.06 2.64 7.05 -2.39 -0.02 2.63 16 51 H 0.07 2.78 5.49 -2.39 -0.01 2.76 16 Total: -1.00 -78.27 381.33 1.33 -76.94 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -1.10 Total: 20.86 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 7.04 Total: 21.73 kcal Atomic # 7 Polarization: -136.58 SS G_CDS: -6.16 Total: -142.74 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.05 Total: -24.15 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.60 Total: 47.37 kcal Total: -78.27 1.33 -76.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963304121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.255 kcal (2) G-P(sol) polarization free energy of solvation -78.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds