Wall clock time and date at job start Wed Apr 1 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 110.78307 * 2 1 4 4 C 1.54327 * 110.72348 * 236.76545 * 2 1 3 5 5 N 1.47026 * 107.26951 * 263.83297 * 4 2 1 6 6 C 1.36937 * 125.64587 * 181.09535 * 5 4 2 7 7 H 1.07994 * 120.00598 * 359.97211 * 6 5 4 8 8 C 1.38819 * 119.99455 * 179.97438 * 6 5 4 9 9 N 1.31610 * 120.00536 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99570 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46964 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46727 * 120.00131 * 10 8 6 13 13 H 1.48501 * 109.47141 * 240.00060 * 10 8 6 14 14 C 1.47428 * 108.70324 * 1.05175 * 5 4 2 15 15 C 1.54913 * 104.83136 * 335.87513 * 14 5 4 16 16 H 1.09003 * 110.99813 * 155.11972 * 15 14 5 17 17 N 1.46499 * 111.00597 * 278.93430 * 15 14 5 18 18 C 1.34777 * 119.99665 * 273.82573 * 17 15 14 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 15 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 15 21 21 H 1.09003 * 107.88162 * 296.54554 * 20 18 17 22 22 C 1.50949 * 108.03510 * 53.06471 * 20 18 17 23 23 C 1.53682 * 110.96193 * 194.28663 * 22 20 18 24 24 C 1.51889 * 106.89864 * 280.90852 * 23 22 20 25 25 N 1.29890 * 127.80964 * 245.31422 * 24 23 22 26 26 N 1.29038 * 109.22399 * 179.63296 * 25 24 23 27 27 C 1.30967 * 109.70724 * 0.05703 * 26 25 24 28 28 N 1.34599 * 124.56967 * 65.09258 * 24 23 22 29 29 C 1.47497 * 125.03745 * 0.51314 * 28 24 23 30 30 C 1.50865 * 108.02505 * 180.02562 * 20 18 17 31 31 H 1.08994 * 109.47283 * 296.75786 * 1 2 3 32 32 H 1.08996 * 109.47437 * 56.76149 * 1 2 3 33 33 H 1.09010 * 109.47243 * 176.75813 * 1 2 3 34 34 H 1.08993 * 109.47477 * 183.23662 * 3 2 1 35 35 H 1.09007 * 109.46976 * 303.24308 * 3 2 1 36 36 H 1.09001 * 109.46369 * 63.23780 * 3 2 1 37 37 H 1.08997 * 109.88893 * 144.40955 * 4 2 1 38 38 H 1.09008 * 109.87931 * 23.23900 * 4 2 1 39 39 H 0.96999 * 120.00474 * 180.02562 * 9 8 6 40 40 H 1.09001 * 110.36798 * 217.03626 * 14 5 4 41 41 H 1.08999 * 110.45652 * 94.76380 * 14 5 4 42 42 H 0.97001 * 119.99790 * 93.54286 * 17 15 14 43 43 H 1.09003 * 109.17515 * 314.67110 * 22 20 18 44 44 H 1.09001 * 109.17848 * 73.90103 * 22 20 18 45 45 H 1.09002 * 109.96388 * 161.56708 * 23 22 20 46 46 H 1.08999 * 110.04515 * 40.29881 * 23 22 20 47 47 H 1.08003 * 126.61168 * 180.10570 * 27 26 25 48 48 H 1.08992 * 109.93602 * 174.64637 * 29 28 24 49 49 H 1.08999 * 110.00020 * 53.46252 * 29 28 24 50 50 H 1.08999 * 109.14399 * 285.97780 * 30 20 18 51 51 H 1.08995 * 109.15145 * 45.13086 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 2.3715 -2.1531 -0.7391 6 6 2.8945 -3.1632 -1.5016 7 1 3.1251 -2.9903 -2.5424 8 6 3.1281 -4.4095 -0.9367 9 7 2.8475 -4.6202 0.3318 10 14 3.8408 -5.7877 -1.9770 11 1 4.0665 -5.2976 -3.3605 12 1 5.1319 -6.2319 -1.3929 13 1 2.8912 -6.9291 -2.0044 14 6 2.0126 -2.2509 0.6874 15 6 2.0790 -0.7955 1.2137 16 1 1.4401 -0.6665 2.0874 17 7 3.4595 -0.4082 1.5144 18 6 3.9906 -0.6890 2.7209 19 8 3.3239 -1.2577 3.5594 20 6 5.4126 -0.2961 3.0280 21 1 6.0657 -0.8467 2.3508 22 6 5.5657 1.1757 2.7297 23 6 7.0489 1.5744 2.6757 24 6 7.5208 1.7151 4.1125 25 7 7.9177 2.7934 4.7183 26 7 8.2305 2.5056 5.9367 27 6 8.0439 1.2270 6.1503 28 7 7.5926 0.7018 4.9955 29 6 7.2366 -0.7001 4.7065 30 6 5.7246 -0.7359 4.4369 31 1 -0.3633 0.4626 0.9176 32 1 -0.3634 0.5633 -0.8595 33 1 -0.3634 -1.0261 -0.0581 34 1 3.1609 1.4062 -0.0580 35 1 1.6750 1.9701 -0.8596 36 1 1.7690 1.9342 0.9176 37 1 2.9868 -0.3206 -1.5776 38 1 1.3262 -0.8255 -1.9978 39 1 3.0111 -5.4910 0.7266 40 1 2.7293 -2.8788 1.2168 41 1 1.0044 -2.6495 0.8001 42 1 3.9926 0.0466 0.8437 43 1 5.1002 1.3966 1.7691 44 1 5.0678 1.7527 3.5090 45 1 7.1601 2.5243 2.1527 46 1 7.6255 0.8008 2.1686 47 1 8.2180 0.6963 7.0746 48 1 7.4761 -1.3287 5.5641 49 1 7.7788 -1.0487 3.8275 50 1 5.2210 -0.0712 5.1387 51 1 5.3590 -1.7522 4.5835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974843524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:55 Heat of formation + Delta-G solvation = 45.359848 kcal Electronic energy + Delta-G solvation = -32345.792054 eV Core-core repulsion = 28281.204976 eV Total energy + Delta-G solvation = -4064.587078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -44.23388 -41.45635 -39.80110 -37.78088 -35.71563 -35.31505 -34.33203 -33.04609 -32.58219 -30.90901 -29.82396 -28.32114 -27.68483 -27.28088 -25.36475 -24.98403 -23.40612 -23.07752 -21.89052 -21.18036 -20.90865 -20.02622 -18.69160 -18.49790 -18.18445 -17.38866 -16.97758 -16.61991 -16.05736 -16.03951 -15.72643 -15.62254 -15.50863 -15.13856 -14.86401 -14.66060 -14.39942 -13.95741 -13.73848 -13.67472 -13.63515 -13.35583 -13.16123 -13.01688 -12.99919 -12.84922 -12.65013 -12.60218 -12.54589 -12.40999 -12.05019 -11.95873 -11.86918 -11.76562 -11.73740 -11.40744 -11.33086 -11.31476 -11.10419 -10.81045 -10.63767 -10.17507 -9.88256 -8.82222 -7.73269 -5.18352 0.97444 1.46039 1.47702 1.57258 1.63756 1.74038 1.90848 2.26699 2.50261 3.24927 3.35935 3.48779 3.56125 3.59152 3.64167 3.72243 3.84176 3.90285 3.99204 4.08624 4.09484 4.22968 4.29465 4.42822 4.43445 4.45706 4.50111 4.56243 4.76617 4.78216 4.84230 4.88350 4.89744 4.94590 4.97634 5.06354 5.09134 5.11420 5.13153 5.16672 5.22291 5.29782 5.34228 5.35754 5.51610 5.55269 5.73649 5.87017 5.99860 6.33950 6.68547 7.12171 7.38737 7.76873 7.81645 8.45296 9.26840 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012037 B = 0.003247 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.576209 B = 8620.735660 C = 9900.402425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.125 4.125 4 C 0.138 3.862 5 N -0.616 5.616 6 C -0.229 4.229 7 H 0.083 0.917 8 C -0.066 4.066 9 N -0.947 5.947 10 Si 0.974 3.026 11 H -0.265 1.265 12 H -0.292 1.292 13 H -0.300 1.300 14 C 0.155 3.845 15 C 0.138 3.862 16 H 0.073 0.927 17 N -0.693 5.693 18 C 0.508 3.492 19 O -0.588 6.588 20 C -0.099 4.099 21 H 0.117 0.883 22 C -0.101 4.101 23 C -0.025 4.025 24 C 0.176 3.824 25 N -0.342 5.342 26 N -0.356 5.356 27 C 0.159 3.841 28 N -0.467 5.467 29 C 0.111 3.889 30 C -0.112 4.112 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.022 0.978 39 H 0.242 0.758 40 H 0.072 0.928 41 H -0.022 1.022 42 H 0.408 0.592 43 H 0.102 0.898 44 H 0.057 0.943 45 H 0.118 0.882 46 H 0.115 0.885 47 H 0.255 0.745 48 H 0.137 0.863 49 H 0.119 0.881 50 H 0.059 0.941 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.795 11.955 4.609 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.075 4.075 3 C -0.182 4.182 4 C 0.013 3.987 5 N -0.342 5.342 6 C -0.359 4.359 7 H 0.101 0.899 8 C -0.258 4.258 9 N -0.597 5.597 10 Si 0.803 3.197 11 H -0.189 1.189 12 H -0.219 1.219 13 H -0.228 1.228 14 C 0.029 3.971 15 C 0.031 3.969 16 H 0.091 0.909 17 N -0.344 5.344 18 C 0.296 3.704 19 O -0.468 6.468 20 C -0.120 4.120 21 H 0.134 0.866 22 C -0.139 4.139 23 C -0.064 4.064 24 C -0.093 4.093 25 N -0.182 5.182 26 N -0.195 5.195 27 C -0.130 4.130 28 N -0.157 5.157 29 C -0.010 4.010 30 C -0.151 4.151 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.040 0.960 39 H 0.052 0.948 40 H 0.090 0.910 41 H -0.004 1.004 42 H 0.246 0.754 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.271 0.729 48 H 0.155 0.845 49 H 0.137 0.863 50 H 0.078 0.922 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.739 12.806 5.432 15.919 hybrid contribution -0.356 -2.617 -0.640 2.718 sum 7.384 10.189 4.793 13.465 Atomic orbital electron populations 1.21696 0.92912 1.01065 1.02874 1.21808 0.96562 0.96120 0.92967 1.21706 1.01070 0.92469 1.03001 1.21652 0.97186 0.84874 0.94990 1.44683 1.73841 1.08211 1.07475 1.19455 1.32892 0.90103 0.93412 0.89904 1.25559 1.02964 0.99941 0.97364 1.70110 1.55286 1.21901 1.12392 0.85070 0.77099 0.79125 0.78394 1.18903 1.21905 1.22765 1.21937 0.96479 0.93432 0.85263 1.22097 0.82951 0.95250 0.96561 0.90877 1.45738 1.14054 1.59457 1.15110 1.21223 0.90051 0.77659 0.81511 1.90676 1.63793 1.43708 1.48666 1.20730 0.92648 0.98999 0.99655 0.86554 1.21276 0.96409 0.92353 1.03895 1.20700 0.94598 1.06054 0.85089 1.25342 1.02108 0.84486 0.97413 1.74116 1.18362 1.24551 1.01137 1.74411 1.21804 1.13478 1.09770 1.27061 1.00427 0.91939 0.93533 1.46523 1.47591 1.11429 1.10107 1.22721 0.94793 0.77120 1.06393 1.21384 0.95024 1.03629 0.95040 0.91446 0.90304 0.94981 0.91672 0.90584 0.91638 0.94266 0.96045 0.94815 0.90960 1.00410 0.75388 0.88007 0.92378 0.86380 0.86648 0.72873 0.84529 0.86259 0.92213 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.41 71.98 0.61 -2.91 16 2 C -0.07 -2.14 0.81 -50.99 -0.04 -2.18 16 3 C -0.12 -2.48 8.07 71.98 0.58 -1.90 16 4 C 0.14 4.98 6.41 86.73 0.56 5.54 16 5 N -0.62 -29.48 3.39 -691.95 -2.35 -31.83 16 6 C -0.23 -12.17 10.27 84.04 0.86 -11.31 16 7 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 8 C -0.07 -3.61 5.49 84.87 0.47 -3.15 16 9 N -0.95 -55.98 10.09 21.65 0.22 -55.76 16 10 Si 0.97 44.37 29.55 68.60 2.03 46.40 16 11 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 13 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 14 C 0.16 7.55 5.27 86.86 0.46 8.01 16 15 C 0.14 4.95 2.56 46.38 0.12 5.07 16 16 H 0.07 2.79 7.63 -2.39 -0.02 2.77 16 17 N -0.69 -20.61 4.42 -435.95 -1.93 -22.54 16 18 C 0.51 15.60 7.12 87.66 0.62 16.23 16 19 O -0.59 -23.72 15.28 -3.04 -0.05 -23.76 16 20 C -0.10 -1.96 1.97 -12.90 -0.03 -1.98 16 21 H 0.12 1.95 7.67 -2.39 -0.02 1.93 16 22 C -0.10 -1.56 4.88 30.16 0.15 -1.41 16 23 C -0.03 -0.34 6.02 30.46 0.18 -0.15 16 24 C 0.18 3.61 7.03 138.83 0.98 4.59 16 25 N -0.34 -9.58 12.23 -50.00 -0.61 -10.19 16 26 N -0.36 -9.71 12.24 -60.27 -0.74 -10.45 16 27 C 0.16 2.88 12.83 180.25 2.31 5.20 16 28 N -0.47 -7.78 2.72 -515.36 -1.40 -9.18 16 29 C 0.11 1.25 6.52 86.40 0.56 1.81 16 30 C -0.11 -2.10 4.49 30.11 0.14 -1.97 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.03 1.07 7.58 -2.38 -0.02 1.05 16 34 H 0.06 1.13 6.35 -2.39 -0.02 1.12 16 35 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.04 1.30 7.76 -2.39 -0.02 1.29 16 38 H 0.02 0.80 7.84 -2.38 -0.02 0.78 16 39 H 0.24 14.10 8.31 -92.71 -0.77 13.33 16 40 H 0.07 4.14 5.87 -2.39 -0.01 4.13 16 41 H -0.02 -1.21 7.81 -2.39 -0.02 -1.23 16 42 H 0.41 9.85 5.66 -92.71 -0.52 9.32 16 43 H 0.10 1.27 6.58 -2.39 -0.02 1.26 16 44 H 0.06 1.13 7.91 -2.39 -0.02 1.11 16 45 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.12 1.04 7.89 -2.39 -0.02 1.02 16 47 H 0.26 2.10 8.06 -2.91 -0.02 2.08 16 48 H 0.14 0.80 8.13 -2.39 -0.02 0.78 16 49 H 0.12 0.96 7.87 -2.39 -0.02 0.94 16 50 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 51 H 0.09 2.01 7.40 -2.39 -0.02 1.99 16 Total: -1.00 -81.96 392.35 4.11 -77.85 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.41 Total: 19.99 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 8.52 Total: 19.48 kcal Atomic # 7 Polarization: -133.15 SS G_CDS: -6.81 Total: -139.96 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -81.96 4.11 -77.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974843524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.212 kcal (2) G-P(sol) polarization free energy of solvation -81.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds