Wall clock time and date at job start Wed Apr 1 2020 05:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 110.91715 * 2 1 4 4 C 1.54911 * 111.00638 * 236.09389 * 2 1 3 5 5 N 1.47416 * 104.83296 * 204.91628 * 4 2 1 6 6 C 1.36941 * 125.64985 * 204.16465 * 5 4 2 7 7 H 1.07998 * 119.99773 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00013 * 179.97438 * 6 5 4 9 9 N 1.31610 * 120.00096 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99722 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47348 * 89.99395 * 10 8 6 12 12 H 1.48498 * 109.47202 * 210.00043 * 10 8 6 13 13 H 1.48507 * 109.47553 * 329.99744 * 10 8 6 14 14 C 1.47023 * 108.70492 * 24.13027 * 5 4 2 15 15 C 1.54325 * 107.27094 * 358.94033 * 14 5 4 16 16 H 1.08998 * 110.71733 * 219.26469 * 15 14 5 17 17 N 1.46505 * 110.72147 * 96.16643 * 15 14 5 18 18 C 1.34783 * 119.99684 * 86.45514 * 17 15 14 19 19 O 1.21277 * 119.99826 * 0.02562 * 18 17 15 20 20 C 1.50696 * 119.99973 * 180.02562 * 18 17 15 21 21 H 1.09002 * 107.87748 * 296.55018 * 20 18 17 22 22 C 1.50953 * 108.02840 * 53.06369 * 20 18 17 23 23 C 1.53672 * 110.96433 * 194.30231 * 22 20 18 24 24 C 1.51886 * 106.89934 * 280.90204 * 23 22 20 25 25 N 1.29898 * 127.81263 * 245.23620 * 24 23 22 26 26 N 1.29039 * 109.21857 * 179.37698 * 25 24 23 27 27 C 1.30970 * 109.70766 * 0.52234 * 26 25 24 28 28 N 1.34597 * 124.56328 * 65.05890 * 24 23 22 29 29 C 1.47497 * 125.04438 * 0.56342 * 28 24 23 30 30 C 1.50861 * 108.02812 * 180.02562 * 20 18 17 31 31 H 1.09003 * 109.46883 * 296.09999 * 1 2 3 32 32 H 1.09001 * 109.46966 * 56.10086 * 1 2 3 33 33 H 1.09005 * 109.46902 * 176.10081 * 1 2 3 34 34 H 1.09000 * 109.47580 * 183.90208 * 3 2 1 35 35 H 1.09002 * 109.47091 * 303.90347 * 3 2 1 36 36 H 1.09004 * 109.47408 * 63.89946 * 3 2 1 37 37 H 1.09001 * 110.36449 * 86.07900 * 4 2 1 38 38 H 1.08995 * 110.45732 * 323.80703 * 4 2 1 39 39 H 0.97006 * 120.00180 * 180.02562 * 9 8 6 40 40 H 1.08995 * 109.88675 * 239.52401 * 14 5 4 41 41 H 1.09004 * 109.88037 * 118.35643 * 14 5 4 42 42 H 0.96992 * 120.00385 * 266.45876 * 17 15 14 43 43 H 1.09000 * 109.18053 * 314.68750 * 22 20 18 44 44 H 1.09000 * 109.17696 * 73.92759 * 22 20 18 45 45 H 1.09001 * 109.96688 * 40.24496 * 23 22 20 46 46 H 1.08998 * 109.96770 * 161.54789 * 23 22 20 47 47 H 1.08002 * 126.61304 * 179.91387 * 27 26 25 48 48 H 1.08992 * 109.93268 * 53.39981 * 29 28 24 49 49 H 1.08998 * 109.92599 * 174.53284 * 29 28 24 50 50 H 1.09007 * 109.14821 * 45.15262 * 30 20 18 51 51 H 1.08997 * 109.10355 * 285.96796 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0854 -0.8067 -1.2002 5 7 3.4272 -1.2431 -0.7732 6 6 4.4646 -1.5654 -1.6070 7 1 4.3340 -1.5101 -2.6777 8 6 5.6839 -1.9632 -1.0761 9 7 5.8431 -2.0301 0.2286 10 14 7.0991 -2.4022 -2.2135 11 1 7.9015 -1.1854 -2.4978 12 1 7.9599 -3.4218 -1.5619 13 1 6.5610 -2.9485 -3.4853 14 6 3.4675 -1.2741 0.6961 15 6 2.0862 -0.8079 1.2023 16 1 2.1920 -0.1725 2.0816 17 7 1.2268 -1.9574 1.4963 18 6 1.2806 -2.5468 2.7072 19 8 2.0401 -2.1253 3.5535 20 6 0.3971 -3.7296 3.0094 21 1 -0.6391 -3.3952 2.9575 22 6 0.6094 -4.7600 1.9269 23 6 -0.4952 -5.8279 1.9601 24 6 -0.1455 -6.7901 3.0821 25 7 0.1714 -8.0460 2.9844 26 7 0.4122 -8.5161 4.1618 27 6 0.2453 -7.5740 5.0562 28 7 -0.1108 -6.4613 4.3869 29 6 -0.4165 -5.1253 4.9320 30 6 0.6747 -4.1700 4.4253 31 1 -0.3633 0.4521 0.9229 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 3.1637 1.4025 -0.0699 35 1 1.6705 1.9732 -0.8530 36 1 1.7837 1.9300 0.9229 37 1 2.1561 -0.1721 -2.0836 38 1 1.4526 -1.6704 -1.4042 39 1 6.6954 -2.3078 0.5997 40 1 4.2426 -0.5997 1.0601 41 1 3.6651 -2.2894 1.0402 42 1 0.6191 -2.2943 0.8195 43 1 0.6007 -4.2659 0.9554 44 1 1.5765 -5.2406 2.0747 45 1 -1.4595 -5.3600 2.1580 46 1 -0.5269 -6.3603 1.0095 47 1 0.3733 -7.6699 6.1243 48 1 -1.3931 -4.7944 4.5788 49 1 -0.4071 -5.1576 6.0215 50 1 0.7111 -3.2932 5.0719 51 1 1.6381 -4.6787 4.4583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974843526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:01 Heat of formation + Delta-G solvation = 67.185835 kcal Electronic energy + Delta-G solvation = -32279.862570 eV Core-core repulsion = 28216.221938 eV Total energy + Delta-G solvation = -4063.640632 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.41171 -40.26921 -38.48163 -36.82277 -34.58032 -33.88339 -33.01671 -32.23368 -30.73445 -30.05441 -28.33564 -27.29031 -26.55182 -25.66242 -24.53343 -23.52611 -22.57651 -21.92367 -20.44602 -20.34834 -19.71231 -18.77564 -17.77902 -17.14268 -16.71116 -16.18512 -15.90423 -15.29290 -15.16815 -14.88056 -14.66737 -14.34415 -14.16607 -13.93262 -13.86267 -13.37917 -13.21884 -12.96476 -12.70854 -12.58593 -12.31433 -12.07133 -12.04251 -11.92207 -11.71602 -11.53934 -11.43205 -11.19797 -11.13880 -11.05788 -10.99644 -10.79527 -10.46020 -10.42500 -10.32043 -10.27914 -10.04308 -9.91135 -9.67737 -9.52660 -9.26389 -8.65645 -8.50960 -6.84957 -5.70775 -3.05752 1.74180 2.31646 2.78277 2.85800 3.36951 3.40102 3.45106 3.47619 3.97682 4.17190 4.29509 4.35892 4.49096 4.52719 4.61510 4.74060 4.78735 4.87408 5.00136 5.12730 5.18017 5.20284 5.23787 5.27826 5.49266 5.51576 5.59047 5.59861 5.68474 5.73983 5.83730 5.84781 5.90983 5.96473 5.97073 6.06952 6.10207 6.12907 6.17698 6.33336 6.52569 6.55965 6.62770 6.67502 6.70445 6.89682 7.52389 7.60537 7.77841 7.86997 8.23821 8.50717 8.63832 9.20464 9.81318 10.45957 11.39744 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010804 B = 0.003346 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.900732 B = 8365.769090 C = 9842.003110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.126 4.126 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.232 4.232 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.918 5.918 10 Si 0.909 3.091 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.177 3.823 15 C 0.124 3.876 16 H 0.086 0.914 17 N -0.708 5.708 18 C 0.512 3.488 19 O -0.539 6.539 20 C -0.106 4.106 21 H 0.094 0.906 22 C -0.116 4.116 23 C -0.029 4.029 24 C 0.179 3.821 25 N -0.295 5.295 26 N -0.305 5.305 27 C 0.147 3.853 28 N -0.470 5.470 29 C 0.107 3.893 30 C -0.120 4.120 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.040 0.960 38 H 0.015 0.985 39 H 0.253 0.747 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.395 0.605 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.217 0.783 48 H 0.097 0.903 49 H 0.106 0.894 50 H 0.103 0.897 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.927 -0.130 8.464 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.184 4.184 4 C 0.017 3.983 5 N -0.328 5.328 6 C -0.360 4.360 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.565 5.565 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.051 3.949 15 C 0.019 3.981 16 H 0.104 0.896 17 N -0.359 5.359 18 C 0.297 3.703 19 O -0.415 6.415 20 C -0.127 4.127 21 H 0.112 0.888 22 C -0.154 4.154 23 C -0.069 4.069 24 C -0.090 4.090 25 N -0.135 5.135 26 N -0.144 5.144 27 C -0.141 4.141 28 N -0.160 5.160 29 C -0.016 4.016 30 C -0.158 4.158 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.230 0.770 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.126 0.874 47 H 0.234 0.766 48 H 0.115 0.885 49 H 0.124 0.876 50 H 0.121 0.879 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.824 -1.253 8.508 19.790 hybrid contribution 0.393 0.784 -0.160 0.892 sum -17.431 -0.468 8.348 19.333 Atomic orbital electron populations 1.21679 0.94787 1.00982 1.01385 1.22006 0.94363 0.96071 0.96620 1.21600 1.02572 0.93719 1.00499 1.21622 0.87843 0.94488 0.94298 1.44425 1.07597 1.79010 1.01799 1.19014 0.89388 1.38688 0.88895 0.90487 1.24794 0.97816 1.01645 0.95925 1.69954 1.24183 1.53183 1.09180 0.86161 0.82458 0.77813 0.79564 1.21615 1.21713 1.20710 1.21501 0.89605 1.00425 0.83354 1.22484 0.92493 0.86187 0.96911 0.89630 1.46055 1.42580 1.33045 1.14223 1.20377 0.83477 0.84015 0.82382 1.90711 1.39397 1.64635 1.46802 1.20654 1.00840 0.95156 0.96076 0.88823 1.21390 0.99859 0.95516 0.98663 1.20562 0.98737 0.93043 0.94537 1.24874 1.03758 0.94751 0.85575 1.74249 1.17240 1.06055 1.15944 1.74526 1.18933 1.25683 0.95282 1.26322 1.03623 0.82823 1.01302 1.46352 1.50369 1.11837 1.07487 1.22514 1.00129 0.78496 1.00433 1.21512 0.98689 1.00144 0.95491 0.92880 0.92589 0.93120 0.91177 0.92861 0.93379 0.94142 0.96760 0.93696 0.92970 0.93435 0.76978 0.89292 0.90282 0.89281 0.87391 0.76633 0.88492 0.87561 0.87880 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.22 37.16 0.31 -1.18 16 2 C -0.09 -1.36 0.83 -152.36 -0.13 -1.49 16 3 C -0.13 -1.90 8.57 37.15 0.32 -1.58 16 4 C 0.14 2.69 6.14 -2.53 -0.02 2.68 16 5 N -0.60 -14.51 3.38 -170.08 -0.57 -15.09 16 6 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 9 N -0.92 -27.16 10.31 55.49 0.57 -26.59 16 10 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 14 C 0.18 4.18 4.79 -3.06 -0.01 4.17 16 15 C 0.12 2.19 2.51 -66.09 -0.17 2.02 16 16 H 0.09 1.59 7.60 -51.93 -0.39 1.19 16 17 N -0.71 -10.24 4.30 -52.03 -0.22 -10.46 16 18 C 0.51 7.46 7.12 -10.98 -0.08 7.38 16 19 O -0.54 -10.14 15.26 5.56 0.08 -10.06 16 20 C -0.11 -1.02 1.97 -93.88 -0.19 -1.21 16 21 H 0.09 0.61 7.67 -51.93 -0.40 0.21 16 22 C -0.12 -1.18 4.88 -27.41 -0.13 -1.32 16 23 C -0.03 -0.25 6.02 -26.95 -0.16 -0.41 16 24 C 0.18 2.10 7.03 -155.74 -1.09 1.01 16 25 N -0.30 -4.54 12.23 32.84 0.40 -4.14 16 26 N -0.30 -4.52 12.25 29.60 0.36 -4.16 16 27 C 0.15 1.53 12.83 -90.34 -1.16 0.37 16 28 N -0.47 -4.48 2.72 -114.25 -0.31 -4.79 16 29 C 0.11 0.64 6.52 -3.17 -0.02 0.62 16 30 C -0.12 -1.09 4.49 -27.48 -0.12 -1.22 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.51 6.38 -51.93 -0.33 0.18 16 34 H 0.07 1.28 7.91 -51.93 -0.41 0.87 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.01 0.26 7.99 -51.93 -0.41 -0.15 16 39 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.05 1.42 7.38 -51.93 -0.38 1.04 16 41 H 0.05 1.31 7.41 -51.93 -0.38 0.92 16 42 H 0.39 4.76 5.67 -40.82 -0.23 4.53 16 43 H 0.09 0.89 6.58 -51.93 -0.34 0.55 16 44 H 0.08 1.08 7.91 -51.93 -0.41 0.67 16 45 H 0.09 0.51 7.89 -51.93 -0.41 0.10 16 46 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.22 1.27 8.06 -52.49 -0.42 0.84 16 48 H 0.10 0.39 7.87 -51.93 -0.41 -0.02 16 49 H 0.11 0.38 8.13 -51.93 -0.42 -0.05 16 50 H 0.10 0.96 7.41 -51.92 -0.38 0.57 16 51 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 LS Contribution 393.83 15.07 5.94 5.94 Total: -1.00 -36.57 393.83 -9.93 -46.50 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.25 Total: 2.54 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -2.91 Total: 3.16 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: 0.23 Total: -65.24 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.57 -9.93 -46.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974843526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.685 kcal (2) G-P(sol) polarization free energy of solvation -36.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds