Wall clock time and date at job start Wed Apr 1 2020 05:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 110.91715 * 2 1 4 4 C 1.54911 * 111.00638 * 236.09389 * 2 1 3 5 5 N 1.47416 * 104.83296 * 204.91628 * 4 2 1 6 6 C 1.36941 * 125.64985 * 204.16465 * 5 4 2 7 7 H 1.07998 * 119.99773 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00013 * 179.97438 * 6 5 4 9 9 N 1.31610 * 120.00096 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99722 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47348 * 89.99395 * 10 8 6 12 12 H 1.48498 * 109.47202 * 210.00043 * 10 8 6 13 13 H 1.48507 * 109.47553 * 329.99744 * 10 8 6 14 14 C 1.47023 * 108.70492 * 24.13027 * 5 4 2 15 15 C 1.54325 * 107.27094 * 358.94033 * 14 5 4 16 16 H 1.08998 * 110.71733 * 219.26469 * 15 14 5 17 17 N 1.46505 * 110.72147 * 96.16643 * 15 14 5 18 18 C 1.34783 * 119.99684 * 86.45514 * 17 15 14 19 19 O 1.21277 * 119.99826 * 0.02562 * 18 17 15 20 20 C 1.50696 * 119.99973 * 180.02562 * 18 17 15 21 21 H 1.09002 * 107.87748 * 296.55018 * 20 18 17 22 22 C 1.50953 * 108.02840 * 53.06369 * 20 18 17 23 23 C 1.53672 * 110.96433 * 194.30231 * 22 20 18 24 24 C 1.51886 * 106.89934 * 280.90204 * 23 22 20 25 25 N 1.29898 * 127.81263 * 245.23620 * 24 23 22 26 26 N 1.29039 * 109.21857 * 179.37698 * 25 24 23 27 27 C 1.30970 * 109.70766 * 0.52234 * 26 25 24 28 28 N 1.34597 * 124.56328 * 65.05890 * 24 23 22 29 29 C 1.47497 * 125.04438 * 0.56342 * 28 24 23 30 30 C 1.50861 * 108.02812 * 180.02562 * 20 18 17 31 31 H 1.09003 * 109.46883 * 296.09999 * 1 2 3 32 32 H 1.09001 * 109.46966 * 56.10086 * 1 2 3 33 33 H 1.09005 * 109.46902 * 176.10081 * 1 2 3 34 34 H 1.09000 * 109.47580 * 183.90208 * 3 2 1 35 35 H 1.09002 * 109.47091 * 303.90347 * 3 2 1 36 36 H 1.09004 * 109.47408 * 63.89946 * 3 2 1 37 37 H 1.09001 * 110.36449 * 86.07900 * 4 2 1 38 38 H 1.08995 * 110.45732 * 323.80703 * 4 2 1 39 39 H 0.97006 * 120.00180 * 180.02562 * 9 8 6 40 40 H 1.08995 * 109.88675 * 239.52401 * 14 5 4 41 41 H 1.09004 * 109.88037 * 118.35643 * 14 5 4 42 42 H 0.96992 * 120.00385 * 266.45876 * 17 15 14 43 43 H 1.09000 * 109.18053 * 314.68750 * 22 20 18 44 44 H 1.09000 * 109.17696 * 73.92759 * 22 20 18 45 45 H 1.09001 * 109.96688 * 40.24496 * 23 22 20 46 46 H 1.08998 * 109.96770 * 161.54789 * 23 22 20 47 47 H 1.08002 * 126.61304 * 179.91387 * 27 26 25 48 48 H 1.08992 * 109.93268 * 53.39981 * 29 28 24 49 49 H 1.08998 * 109.92599 * 174.53284 * 29 28 24 50 50 H 1.09007 * 109.14821 * 45.15262 * 30 20 18 51 51 H 1.08997 * 109.10355 * 285.96796 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0854 -0.8067 -1.2002 5 7 3.4272 -1.2431 -0.7732 6 6 4.4646 -1.5654 -1.6070 7 1 4.3340 -1.5101 -2.6777 8 6 5.6839 -1.9632 -1.0761 9 7 5.8431 -2.0301 0.2286 10 14 7.0991 -2.4022 -2.2135 11 1 7.9015 -1.1854 -2.4978 12 1 7.9599 -3.4218 -1.5619 13 1 6.5610 -2.9485 -3.4853 14 6 3.4675 -1.2741 0.6961 15 6 2.0862 -0.8079 1.2023 16 1 2.1920 -0.1725 2.0816 17 7 1.2268 -1.9574 1.4963 18 6 1.2806 -2.5468 2.7072 19 8 2.0401 -2.1253 3.5535 20 6 0.3971 -3.7296 3.0094 21 1 -0.6391 -3.3952 2.9575 22 6 0.6094 -4.7600 1.9269 23 6 -0.4952 -5.8279 1.9601 24 6 -0.1455 -6.7901 3.0821 25 7 0.1714 -8.0460 2.9844 26 7 0.4122 -8.5161 4.1618 27 6 0.2453 -7.5740 5.0562 28 7 -0.1108 -6.4613 4.3869 29 6 -0.4165 -5.1253 4.9320 30 6 0.6747 -4.1700 4.4253 31 1 -0.3633 0.4521 0.9229 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 3.1637 1.4025 -0.0699 35 1 1.6705 1.9732 -0.8530 36 1 1.7837 1.9300 0.9229 37 1 2.1561 -0.1721 -2.0836 38 1 1.4526 -1.6704 -1.4042 39 1 6.6954 -2.3078 0.5997 40 1 4.2426 -0.5997 1.0601 41 1 3.6651 -2.2894 1.0402 42 1 0.6191 -2.2943 0.8195 43 1 0.6007 -4.2659 0.9554 44 1 1.5765 -5.2406 2.0747 45 1 -1.4595 -5.3600 2.1580 46 1 -0.5269 -6.3603 1.0095 47 1 0.3733 -7.6699 6.1243 48 1 -1.3931 -4.7944 4.5788 49 1 -0.4071 -5.1576 6.0215 50 1 0.7111 -3.2932 5.0719 51 1 1.6381 -4.6787 4.4583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974843526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:00 Heat of formation + Delta-G solvation = 43.058750 kcal Electronic energy + Delta-G solvation = -32280.908799 eV Core-core repulsion = 28216.221938 eV Total energy + Delta-G solvation = -4064.686861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.23710 -41.50307 -39.81628 -37.80771 -35.75641 -35.32182 -34.32832 -33.06282 -32.60862 -30.91909 -29.83970 -28.27919 -27.72113 -27.29747 -25.39332 -25.03709 -23.42408 -23.04276 -21.98698 -21.18400 -20.92692 -20.06074 -18.69291 -18.55012 -18.17095 -17.34715 -16.95102 -16.69510 -16.15665 -15.99887 -15.78920 -15.59618 -15.47263 -15.30718 -14.99750 -14.67269 -14.30404 -13.88252 -13.80389 -13.69807 -13.43919 -13.34989 -13.19506 -13.12473 -12.93866 -12.80304 -12.71670 -12.63650 -12.56357 -12.42725 -12.13848 -11.97927 -11.88640 -11.85245 -11.71897 -11.48574 -11.32092 -11.28455 -11.08400 -10.82363 -10.66151 -10.19212 -9.94090 -8.89379 -7.85665 -5.21404 0.96511 1.41467 1.43194 1.51728 1.66198 1.67086 1.90555 2.24391 2.47125 3.23643 3.33107 3.46447 3.52224 3.57064 3.64667 3.74634 3.83307 3.89875 3.98719 4.08210 4.10015 4.24957 4.27570 4.42308 4.43526 4.44649 4.50624 4.55788 4.73928 4.75283 4.87460 4.87826 4.91027 4.96870 4.98432 5.06368 5.08638 5.12924 5.16727 5.18395 5.19766 5.29180 5.35386 5.39423 5.45591 5.59550 5.72718 5.78512 6.02319 6.16694 6.64422 7.07379 7.35240 7.76544 7.78081 8.41173 9.23176 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010804 B = 0.003346 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.900732 B = 8365.769090 C = 9842.003110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.125 4.125 4 C 0.137 3.863 5 N -0.620 5.620 6 C -0.234 4.234 7 H 0.087 0.913 8 C -0.069 4.069 9 N -0.954 5.954 10 Si 0.972 3.028 11 H -0.286 1.286 12 H -0.302 1.302 13 H -0.264 1.264 14 C 0.194 3.806 15 C 0.139 3.861 16 H 0.075 0.925 17 N -0.699 5.699 18 C 0.505 3.495 19 O -0.588 6.588 20 C -0.094 4.094 21 H 0.149 0.851 22 C -0.108 4.108 23 C -0.020 4.020 24 C 0.175 3.825 25 N -0.351 5.351 26 N -0.361 5.361 27 C 0.159 3.841 28 N -0.467 5.467 29 C 0.111 3.889 30 C -0.117 4.117 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.025 0.975 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.035 0.965 39 H 0.241 0.759 40 H -0.001 1.001 41 H -0.004 1.004 42 H 0.411 0.589 43 H 0.094 0.906 44 H 0.030 0.970 45 H 0.136 0.864 46 H 0.108 0.892 47 H 0.258 0.742 48 H 0.135 0.865 49 H 0.139 0.861 50 H 0.104 0.896 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.599 1.026 8.129 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.074 4.074 3 C -0.183 4.183 4 C 0.012 3.988 5 N -0.346 5.346 6 C -0.363 4.363 7 H 0.105 0.895 8 C -0.261 4.261 9 N -0.603 5.603 10 Si 0.801 3.199 11 H -0.213 1.213 12 H -0.229 1.229 13 H -0.189 1.189 14 C 0.068 3.932 15 C 0.033 3.967 16 H 0.093 0.907 17 N -0.351 5.351 18 C 0.293 3.707 19 O -0.468 6.468 20 C -0.115 4.115 21 H 0.167 0.833 22 C -0.147 4.147 23 C -0.059 4.059 24 C -0.095 4.095 25 N -0.190 5.190 26 N -0.200 5.200 27 C -0.130 4.130 28 N -0.157 5.157 29 C -0.009 4.009 30 C -0.155 4.155 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.017 0.983 41 H 0.014 0.986 42 H 0.249 0.751 43 H 0.112 0.888 44 H 0.049 0.951 45 H 0.154 0.846 46 H 0.126 0.874 47 H 0.273 0.727 48 H 0.153 0.847 49 H 0.157 0.843 50 H 0.122 0.878 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -22.567 -0.094 8.121 23.984 hybrid contribution 1.905 0.487 -0.050 1.967 sum -20.662 0.393 8.070 22.186 Atomic orbital electron populations 1.21660 0.90312 1.02888 1.03201 1.21972 0.97611 0.94949 0.92915 1.21605 0.99805 0.94245 1.02637 1.21928 0.85406 0.95572 0.95905 1.44676 1.09312 1.78843 1.01772 1.19475 0.90240 1.36794 0.89823 0.89529 1.25622 1.00578 1.02808 0.97135 1.70235 1.23905 1.55077 1.11096 0.85156 0.79326 0.77156 0.78232 1.21260 1.22942 1.18878 1.21063 0.92290 0.96286 0.83574 1.22009 0.90014 0.87309 0.97358 0.90652 1.45891 1.41982 1.32264 1.14919 1.21381 0.83201 0.84583 0.81531 1.90695 1.41533 1.66213 1.48358 1.20725 1.02344 0.92340 0.96042 0.83324 1.21290 0.98354 0.95912 0.99106 1.20698 0.99772 0.91718 0.93686 1.25385 1.02579 0.94285 0.87221 1.74117 1.19495 1.08432 1.16969 1.74395 1.21463 1.28089 0.96043 1.27088 1.01129 0.82280 1.02496 1.46564 1.49632 1.12811 1.06720 1.22835 1.00141 0.75553 1.02341 1.21460 0.98134 1.00588 0.95349 0.91276 0.90578 0.91256 0.95559 0.90399 0.91490 0.93649 0.94772 0.94970 0.98298 0.98568 0.75081 0.88798 0.95109 0.84569 0.87383 0.72666 0.84681 0.84337 0.87796 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 8.22 71.98 0.59 -1.57 16 2 C -0.07 -2.08 0.83 -50.79 -0.04 -2.13 16 3 C -0.13 -3.59 8.57 71.98 0.62 -2.98 16 4 C 0.14 4.91 6.14 86.86 0.53 5.44 16 5 N -0.62 -30.77 3.38 -692.00 -2.34 -33.11 16 6 C -0.23 -13.04 10.28 84.03 0.86 -12.18 16 7 H 0.09 4.55 7.83 -2.91 -0.02 4.52 16 8 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 9 N -0.95 -60.48 10.31 21.65 0.22 -60.26 16 10 Si 0.97 47.25 29.55 68.60 2.03 49.27 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 13 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 14 C 0.19 9.81 4.79 86.73 0.42 10.23 16 15 C 0.14 4.96 2.51 46.18 0.12 5.07 16 16 H 0.08 2.87 7.60 -2.39 -0.02 2.85 16 17 N -0.70 -19.33 4.30 -436.90 -1.88 -21.20 16 18 C 0.51 14.41 7.12 87.65 0.62 15.03 16 19 O -0.59 -22.92 15.26 -3.02 -0.05 -22.97 16 20 C -0.09 -1.57 1.97 -12.90 -0.03 -1.60 16 21 H 0.15 0.97 7.67 -2.39 -0.02 0.95 16 22 C -0.11 -2.06 4.88 30.15 0.15 -1.91 16 23 C -0.02 -0.28 6.02 30.45 0.18 -0.10 16 24 C 0.18 3.90 7.03 138.83 0.98 4.87 16 25 N -0.35 -11.00 12.23 -50.00 -0.61 -11.62 16 26 N -0.36 -10.87 12.25 -60.27 -0.74 -11.61 16 27 C 0.16 3.09 12.83 180.25 2.31 5.40 16 28 N -0.47 -7.82 2.72 -515.37 -1.40 -9.22 16 29 C 0.11 0.86 6.52 86.40 0.56 1.42 16 30 C -0.12 -1.91 4.49 30.11 0.14 -1.77 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 0.98 6.38 -2.38 -0.02 0.97 16 34 H 0.03 0.96 7.91 -2.39 -0.02 0.94 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.05 1.60 8.05 -2.39 -0.02 1.58 16 38 H 0.03 1.13 7.99 -2.39 -0.02 1.11 16 39 H 0.24 15.15 8.31 -92.70 -0.77 14.38 16 40 H 0.00 -0.07 7.38 -2.39 -0.02 -0.09 16 41 H 0.00 -0.23 7.41 -2.38 -0.02 -0.25 16 42 H 0.41 8.60 5.67 -92.71 -0.53 8.07 16 43 H 0.09 1.69 6.58 -2.39 -0.02 1.68 16 44 H 0.03 0.88 7.91 -2.39 -0.02 0.86 16 45 H 0.14 0.70 7.89 -2.39 -0.02 0.68 16 46 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.26 2.31 8.06 -2.91 -0.02 2.28 16 48 H 0.14 0.14 7.87 -2.39 -0.02 0.12 16 49 H 0.14 0.27 8.13 -2.39 -0.02 0.25 16 50 H 0.10 1.74 7.41 -2.38 -0.02 1.72 16 51 H 0.04 0.97 8.08 -2.39 -0.02 0.95 16 Total: -1.00 -92.92 393.83 4.12 -88.79 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.41 Total: 12.23 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 8.48 Total: 19.68 kcal Atomic # 7 Polarization: -140.27 SS G_CDS: -6.74 Total: -147.02 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.97 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -92.92 4.12 -88.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974843526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.852 kcal (2) G-P(sol) polarization free energy of solvation -92.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds