Wall clock time and date at job start Wed Apr 1 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33476 * 125.50010 * 2 1 4 4 C 1.30329 * 109.72608 * 179.97438 * 3 2 1 5 5 N 1.34678 * 108.04647 * 0.04160 * 4 3 2 6 6 N 1.30975 * 125.49645 * 179.97438 * 2 1 3 7 7 C 1.46296 * 125.04860 * 179.91144 * 5 4 3 8 8 C 1.53305 * 108.77326 * 342.99266 * 7 5 4 9 9 H 1.09002 * 109.46741 * 290.11016 * 8 7 5 10 10 C 1.50709 * 109.46343 * 170.12266 * 8 7 5 11 11 O 1.21282 * 119.99607 * 239.99920 * 10 8 7 12 12 N 1.34769 * 120.00056 * 59.99912 * 10 8 7 13 13 C 1.46505 * 119.99789 * 179.97438 * 12 10 8 14 14 H 1.08999 * 110.91536 * 322.55579 * 13 12 10 15 15 C 1.54908 * 111.00088 * 86.45771 * 13 12 10 16 16 N 1.47425 * 104.92961 * 81.00982 * 15 13 12 17 17 C 1.36938 * 125.65179 * 204.15650 * 16 15 13 18 18 H 1.07995 * 120.00281 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99650 * 0.02562 * 17 16 15 20 20 N 1.31621 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46993 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47464 * 119.99742 * 21 19 17 24 24 H 1.48496 * 109.47378 * 240.00268 * 21 19 17 25 25 C 1.47290 * 108.55742 * 24.15407 * 16 15 13 26 26 C 1.54325 * 107.30599 * 358.92448 * 25 16 15 27 27 C 1.53003 * 110.72022 * 219.45263 * 26 25 16 28 28 C 1.52999 * 110.72015 * 96.18285 * 26 25 16 29 29 C 1.53159 * 109.49402 * 50.11689 * 8 7 5 30 30 C 1.50926 * 127.90118 * 180.09133 * 4 3 2 31 31 H 1.09003 * 109.46396 * 90.02581 * 1 2 3 32 32 H 1.09000 * 109.46802 * 210.02791 * 1 2 3 33 33 H 1.08995 * 109.46618 * 330.03197 * 1 2 3 34 34 H 1.09005 * 109.58497 * 223.21367 * 7 5 4 35 35 H 1.08995 * 109.58903 * 102.78341 * 7 5 4 36 36 H 0.97002 * 120.00034 * 0.02562 * 12 10 8 37 37 H 1.09002 * 110.36632 * 199.90378 * 15 13 12 38 38 H 1.08995 * 110.36781 * 322.11615 * 15 13 12 39 39 H 0.97001 * 119.99611 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.85762 * 239.50064 * 25 16 15 41 41 H 1.08995 * 110.00297 * 118.43011 * 25 16 15 42 42 H 1.08995 * 109.46983 * 173.52221 * 27 26 25 43 43 H 1.09001 * 109.47276 * 293.52685 * 27 26 25 44 44 H 1.09004 * 109.46998 * 53.52573 * 27 26 25 45 45 H 1.09008 * 109.46820 * 306.47734 * 28 26 25 46 46 H 1.08995 * 109.47464 * 66.47481 * 28 26 25 47 47 H 1.09002 * 109.47392 * 186.48224 * 28 26 25 48 48 H 1.09004 * 109.50762 * 50.75498 * 29 8 7 49 49 H 1.08996 * 109.50705 * 170.89103 * 29 8 7 50 50 H 1.09002 * 109.71560 * 283.66537 * 30 4 3 51 51 H 1.09005 * 109.71591 * 44.30667 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5364 0.7324 0.0005 5 7 3.5898 -0.6134 0.0000 6 7 2.2675 -1.0663 0.0005 7 6 4.8198 -1.4053 -0.0015 8 6 5.9856 -0.5052 -0.4269 9 1 5.8857 -0.2564 -1.4834 10 6 7.2876 -1.2304 -0.2026 11 8 8.1192 -0.7653 0.5478 12 7 7.5278 -2.3955 -0.8359 13 6 8.7938 -3.1000 -0.6183 14 1 9.6202 -2.3955 -0.5253 15 6 8.7090 -4.0235 0.6225 16 7 8.0304 -5.2416 0.1437 17 6 7.3270 -6.1217 0.9221 18 1 6.8648 -6.9888 0.4741 19 6 7.2081 -5.8992 2.2871 20 7 7.7711 -4.8421 2.8331 21 14 6.2492 -7.1000 3.3492 22 1 5.7181 -8.1967 2.5003 23 1 7.1460 -7.6675 4.3879 24 1 5.1207 -6.3904 4.0034 25 6 8.2363 -5.3520 -1.3105 26 6 9.0617 -4.1251 -1.7518 27 6 8.5607 -3.5902 -3.0950 28 6 10.5499 -4.4724 -1.8269 29 6 5.9679 0.7810 0.4044 30 6 4.7523 1.6264 0.0027 31 1 -0.3632 -0.0005 -1.0277 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3632 0.8903 0.5133 34 1 4.7211 -2.2322 -0.7049 35 1 5.0050 -1.7946 0.9996 36 1 6.8628 -2.7672 -1.4364 37 1 9.7083 -4.2638 0.9855 38 1 8.1243 -3.5481 1.4099 39 1 7.6883 -4.6869 3.7870 40 1 7.2735 -5.3544 -1.8216 41 1 8.7807 -6.2676 -1.5416 42 1 9.0780 -2.6605 -3.3315 43 1 8.7588 -4.3250 -3.8753 44 1 7.4884 -3.4042 -3.0348 45 1 10.8705 -4.9041 -0.8788 46 1 10.7150 -5.1925 -2.6283 47 1 11.1245 -3.5680 -2.0270 48 1 5.9024 0.5294 1.4630 49 1 6.8814 1.3462 0.2198 50 1 4.9058 2.0408 -0.9938 51 1 4.6130 2.4349 0.7203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974876709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:52 Heat of formation + Delta-G solvation = 69.783905 kcal Electronic energy + Delta-G solvation = -32228.393920 eV Core-core repulsion = 28164.865948 eV Total energy + Delta-G solvation = -4063.527972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.38606 -40.07785 -38.37889 -36.47911 -33.95820 -33.42430 -33.03649 -32.01802 -30.75956 -29.83384 -28.65110 -27.96410 -26.81643 -25.67544 -24.44356 -23.87278 -22.87769 -20.98512 -20.58600 -19.98225 -19.44750 -18.68315 -17.14858 -16.83746 -16.60025 -16.14400 -15.95262 -15.30501 -14.72654 -14.46501 -14.38974 -14.22313 -13.97866 -13.83977 -13.78597 -13.33176 -13.27063 -13.08782 -12.72900 -12.63606 -12.43660 -12.24389 -12.01989 -11.91801 -11.86490 -11.71945 -11.41172 -11.32762 -11.23706 -11.06106 -11.01693 -10.83326 -10.48756 -10.25224 -10.05973 -10.02575 -9.87238 -9.75471 -9.71063 -9.56538 -9.30154 -8.74532 -8.49139 -6.87313 -5.68677 -3.11704 1.59368 2.15072 2.82491 2.86883 3.36238 3.37991 3.42508 3.44912 3.82241 4.15308 4.39857 4.44112 4.46653 4.64283 4.78690 4.88620 5.04063 5.10313 5.12070 5.16481 5.19971 5.27389 5.42568 5.46741 5.47187 5.51718 5.55384 5.64931 5.70392 5.76168 5.78519 5.79798 5.94359 5.99269 6.02683 6.09911 6.16901 6.31985 6.32372 6.42267 6.43563 6.52379 6.62138 6.64607 6.74250 6.88349 7.40828 7.57437 7.76594 7.87678 8.10721 8.32472 8.49116 9.16794 9.77951 10.41721 11.33779 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009105 B = 0.003843 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.348375 B = 7284.916592 C = 9004.631934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.210 3.790 3 N -0.542 5.542 4 C 0.276 3.724 5 N -0.369 5.369 6 N -0.310 5.310 7 C 0.138 3.862 8 C -0.122 4.122 9 H 0.106 0.894 10 C 0.525 3.475 11 O -0.529 6.529 12 N -0.699 5.699 13 C 0.124 3.876 14 H 0.086 0.914 15 C 0.146 3.854 16 N -0.601 5.601 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.917 5.917 21 Si 0.910 3.090 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.142 3.858 26 C -0.087 4.087 27 C -0.131 4.131 28 C -0.129 4.129 29 C -0.108 4.108 30 C -0.040 4.040 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.395 0.605 37 H 0.020 0.980 38 H 0.114 0.886 39 H 0.252 0.748 40 H 0.021 0.979 41 H 0.024 0.976 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.082 0.918 49 H 0.099 0.901 50 H 0.100 0.900 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.369 11.486 -11.297 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.071 4.071 3 N -0.270 5.270 4 C 0.000 4.000 5 N -0.160 5.160 6 N -0.139 5.139 7 C 0.015 3.985 8 C -0.144 4.144 9 H 0.124 0.876 10 C 0.308 3.692 11 O -0.405 6.405 12 N -0.349 5.349 13 C 0.019 3.981 14 H 0.104 0.896 15 C 0.020 3.980 16 N -0.327 5.327 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.740 3.260 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.016 3.984 26 C -0.088 4.088 27 C -0.189 4.189 28 C -0.186 4.186 29 C -0.146 4.146 30 C -0.079 4.079 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.230 0.770 37 H 0.038 0.962 38 H 0.131 0.869 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.152 11.265 -10.525 15.966 hybrid contribution -0.552 -1.121 0.288 1.283 sum -4.704 10.144 -10.237 15.160 Atomic orbital electron populations 1.20050 0.84011 1.03900 1.03486 1.24408 0.98206 0.85612 0.98911 1.70155 0.99843 1.30878 1.26162 1.24329 0.95015 0.84082 0.96620 1.50156 1.05664 1.05832 1.54327 1.77998 0.86543 1.22487 1.26858 1.21804 0.77942 0.93246 1.05461 1.21725 0.92934 0.96769 1.03003 0.87611 1.19772 0.87554 0.81286 0.80590 1.90726 1.47087 1.66831 1.35830 1.45863 1.20259 1.21961 1.46838 1.22559 0.84726 0.93261 0.97593 0.89559 1.22305 0.96907 0.85554 0.93207 1.44520 1.61089 1.25981 1.01095 1.19065 1.24759 1.02327 0.89082 0.90536 1.24761 1.00757 0.98216 0.96590 1.69802 1.48303 1.27633 1.10756 0.86076 0.79240 0.80095 0.80548 1.20554 1.21720 1.21815 1.21461 0.95571 0.94370 0.87012 1.21833 0.96480 0.96299 0.94162 1.21726 1.00357 1.00587 0.96234 1.21688 0.93793 1.00779 1.02360 1.21581 0.98291 0.93938 1.00835 1.20442 0.86819 0.96016 1.04667 0.90064 0.90074 0.89738 0.87984 0.87932 0.76966 0.96170 0.86860 0.93743 0.96087 0.95791 0.92745 0.92621 0.93057 0.91704 0.92669 0.93038 0.89913 0.88205 0.88213 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 36.01 0.38 -0.17 16 2 C 0.21 3.04 8.15 -156.42 -1.27 1.77 16 3 N -0.54 -7.97 11.18 -8.03 -0.09 -8.06 16 4 C 0.28 3.71 7.72 -155.78 -1.20 2.51 16 5 N -0.37 -5.44 4.04 -58.29 -0.24 -5.68 16 6 N -0.31 -5.04 12.74 32.51 0.41 -4.63 16 7 C 0.14 1.88 6.43 -3.99 -0.03 1.85 16 8 C -0.12 -1.42 2.54 -91.53 -0.23 -1.65 16 9 H 0.11 0.98 8.12 -51.93 -0.42 0.55 16 10 C 0.52 8.02 7.13 -10.98 -0.08 7.94 16 11 O -0.53 -9.99 15.58 5.56 0.09 -9.90 16 12 N -0.70 -10.67 4.60 -51.73 -0.24 -10.91 16 13 C 0.12 2.17 2.56 -65.78 -0.17 2.00 16 14 H 0.09 1.54 7.63 -51.93 -0.40 1.14 16 15 C 0.15 3.37 5.27 -2.53 -0.01 3.36 16 16 N -0.60 -14.28 3.40 -169.86 -0.58 -14.85 16 17 C -0.22 -5.99 10.28 -15.06 -0.15 -6.15 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -26.32 10.09 55.49 0.56 -25.76 16 21 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C 0.14 2.68 6.42 -2.92 -0.02 2.66 16 26 C -0.09 -1.32 0.81 -152.67 -0.12 -1.44 16 27 C -0.13 -1.55 8.07 37.16 0.30 -1.25 16 28 C -0.13 -1.81 8.41 37.16 0.31 -1.50 16 29 C -0.11 -1.16 4.68 -26.43 -0.12 -1.28 16 30 C -0.04 -0.38 6.33 -27.56 -0.17 -0.55 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.33 7.88 -51.93 -0.41 0.92 16 35 H 0.10 1.64 8.12 -51.93 -0.42 1.22 16 36 H 0.40 5.35 6.54 -40.82 -0.27 5.09 16 37 H 0.02 0.52 7.80 -51.93 -0.41 0.11 16 38 H 0.11 3.06 5.86 -51.93 -0.30 2.76 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.02 0.39 7.77 -51.93 -0.40 -0.01 16 41 H 0.02 0.47 7.84 -51.93 -0.41 0.06 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.57 6.35 -51.93 -0.33 0.24 16 45 H 0.06 1.05 7.57 -51.92 -0.39 0.66 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 49 H 0.10 1.00 7.80 -51.93 -0.41 0.59 16 50 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 400.12 15.07 6.03 6.03 Total: -1.00 -33.73 400.12 -10.11 -43.84 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.34 Total: 5.15 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -2.69 Total: 7.81 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -0.17 Total: -69.88 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.73 -10.11 -43.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974876709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.620 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds