Wall clock time and date at job start Wed Apr 1 2020 05:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33476 * 125.50010 * 2 1 4 4 C 1.30329 * 109.72608 * 179.97438 * 3 2 1 5 5 N 1.34678 * 108.04647 * 0.04160 * 4 3 2 6 6 N 1.30975 * 125.49645 * 179.97438 * 2 1 3 7 7 C 1.46296 * 125.04860 * 179.91144 * 5 4 3 8 8 C 1.53305 * 108.77326 * 342.99266 * 7 5 4 9 9 H 1.09002 * 109.46741 * 290.11016 * 8 7 5 10 10 C 1.50709 * 109.46343 * 170.12266 * 8 7 5 11 11 O 1.21282 * 119.99607 * 239.99920 * 10 8 7 12 12 N 1.34769 * 120.00056 * 59.99912 * 10 8 7 13 13 C 1.46505 * 119.99789 * 179.97438 * 12 10 8 14 14 H 1.08999 * 110.91536 * 322.55579 * 13 12 10 15 15 C 1.54908 * 111.00088 * 86.45771 * 13 12 10 16 16 N 1.47425 * 104.92961 * 81.00982 * 15 13 12 17 17 C 1.36938 * 125.65179 * 204.15650 * 16 15 13 18 18 H 1.07995 * 120.00281 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99650 * 0.02562 * 17 16 15 20 20 N 1.31621 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46993 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47464 * 119.99742 * 21 19 17 24 24 H 1.48496 * 109.47378 * 240.00268 * 21 19 17 25 25 C 1.47290 * 108.55742 * 24.15407 * 16 15 13 26 26 C 1.54325 * 107.30599 * 358.92448 * 25 16 15 27 27 C 1.53003 * 110.72022 * 219.45263 * 26 25 16 28 28 C 1.52999 * 110.72015 * 96.18285 * 26 25 16 29 29 C 1.53159 * 109.49402 * 50.11689 * 8 7 5 30 30 C 1.50926 * 127.90118 * 180.09133 * 4 3 2 31 31 H 1.09003 * 109.46396 * 90.02581 * 1 2 3 32 32 H 1.09000 * 109.46802 * 210.02791 * 1 2 3 33 33 H 1.08995 * 109.46618 * 330.03197 * 1 2 3 34 34 H 1.09005 * 109.58497 * 223.21367 * 7 5 4 35 35 H 1.08995 * 109.58903 * 102.78341 * 7 5 4 36 36 H 0.97002 * 120.00034 * 0.02562 * 12 10 8 37 37 H 1.09002 * 110.36632 * 199.90378 * 15 13 12 38 38 H 1.08995 * 110.36781 * 322.11615 * 15 13 12 39 39 H 0.97001 * 119.99611 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.85762 * 239.50064 * 25 16 15 41 41 H 1.08995 * 110.00297 * 118.43011 * 25 16 15 42 42 H 1.08995 * 109.46983 * 173.52221 * 27 26 25 43 43 H 1.09001 * 109.47276 * 293.52685 * 27 26 25 44 44 H 1.09004 * 109.46998 * 53.52573 * 27 26 25 45 45 H 1.09008 * 109.46820 * 306.47734 * 28 26 25 46 46 H 1.08995 * 109.47464 * 66.47481 * 28 26 25 47 47 H 1.09002 * 109.47392 * 186.48224 * 28 26 25 48 48 H 1.09004 * 109.50762 * 50.75498 * 29 8 7 49 49 H 1.08996 * 109.50705 * 170.89103 * 29 8 7 50 50 H 1.09002 * 109.71560 * 283.66537 * 30 4 3 51 51 H 1.09005 * 109.71591 * 44.30667 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5364 0.7324 0.0005 5 7 3.5898 -0.6134 0.0000 6 7 2.2675 -1.0663 0.0005 7 6 4.8198 -1.4053 -0.0015 8 6 5.9856 -0.5052 -0.4269 9 1 5.8857 -0.2564 -1.4834 10 6 7.2876 -1.2304 -0.2026 11 8 8.1192 -0.7653 0.5478 12 7 7.5278 -2.3955 -0.8359 13 6 8.7938 -3.1000 -0.6183 14 1 9.6202 -2.3955 -0.5253 15 6 8.7090 -4.0235 0.6225 16 7 8.0304 -5.2416 0.1437 17 6 7.3270 -6.1217 0.9221 18 1 6.8648 -6.9888 0.4741 19 6 7.2081 -5.8992 2.2871 20 7 7.7711 -4.8421 2.8331 21 14 6.2492 -7.1000 3.3492 22 1 5.7181 -8.1967 2.5003 23 1 7.1460 -7.6675 4.3879 24 1 5.1207 -6.3904 4.0034 25 6 8.2363 -5.3520 -1.3105 26 6 9.0617 -4.1251 -1.7518 27 6 8.5607 -3.5902 -3.0950 28 6 10.5499 -4.4724 -1.8269 29 6 5.9679 0.7810 0.4044 30 6 4.7523 1.6264 0.0027 31 1 -0.3632 -0.0005 -1.0277 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3632 0.8903 0.5133 34 1 4.7211 -2.2322 -0.7049 35 1 5.0050 -1.7946 0.9996 36 1 6.8628 -2.7672 -1.4364 37 1 9.7083 -4.2638 0.9855 38 1 8.1243 -3.5481 1.4099 39 1 7.6883 -4.6869 3.7870 40 1 7.2735 -5.3544 -1.8216 41 1 8.7807 -6.2676 -1.5416 42 1 9.0780 -2.6605 -3.3315 43 1 8.7588 -4.3250 -3.8753 44 1 7.4884 -3.4042 -3.0348 45 1 10.8705 -4.9041 -0.8788 46 1 10.7150 -5.1925 -2.6283 47 1 11.1245 -3.5680 -2.0270 48 1 5.9024 0.5294 1.4630 49 1 6.8814 1.3462 0.2198 50 1 4.9058 2.0408 -0.9938 51 1 4.6130 2.4349 0.7203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974876709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:51 Heat of formation + Delta-G solvation = 48.158320 kcal Electronic energy + Delta-G solvation = -32229.331675 eV Core-core repulsion = 28164.865948 eV Total energy + Delta-G solvation = -4064.465727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.44059 -41.39732 -39.75137 -37.59914 -35.70503 -34.66678 -34.18798 -33.00015 -32.60246 -30.91167 -29.87436 -29.19590 -27.98144 -27.39757 -25.56224 -25.20077 -24.13953 -22.39473 -21.80093 -21.35207 -20.56683 -19.95136 -18.71809 -18.32362 -17.79907 -17.38475 -17.18945 -16.67685 -16.25199 -15.72484 -15.62821 -15.43321 -15.26965 -15.17473 -14.96421 -14.63805 -14.36049 -14.15905 -13.84811 -13.69989 -13.65087 -13.52850 -13.35763 -13.05361 -13.02066 -12.92958 -12.81972 -12.70002 -12.64436 -12.55565 -12.26650 -12.09915 -11.98193 -11.79965 -11.76075 -11.43532 -11.34576 -11.16375 -10.92436 -10.80155 -10.75580 -10.36339 -9.96718 -8.85473 -7.78130 -5.22010 0.53694 1.06464 1.40445 1.41464 1.50712 1.65196 1.78869 2.17056 2.45103 2.91323 3.14053 3.31529 3.43505 3.44850 3.57985 3.68621 3.70542 3.80996 3.97120 4.03602 4.08097 4.16557 4.20146 4.38544 4.42347 4.50537 4.55281 4.72208 4.73996 4.77991 4.84851 4.86618 4.88507 4.91990 4.93514 4.94557 5.04864 5.11722 5.11788 5.21449 5.28057 5.31186 5.35168 5.45540 5.47468 5.54190 5.69144 5.74331 5.83435 6.31098 6.56551 7.04099 7.08623 7.25144 7.78075 8.41089 9.21612 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009105 B = 0.003843 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.348375 B = 7284.916592 C = 9004.631934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.206 3.794 3 N -0.559 5.559 4 C 0.277 3.723 5 N -0.381 5.381 6 N -0.354 5.354 7 C 0.144 3.856 8 C -0.105 4.105 9 H 0.146 0.854 10 C 0.524 3.476 11 O -0.567 6.567 12 N -0.693 5.693 13 C 0.138 3.862 14 H 0.086 0.914 15 C 0.153 3.847 16 N -0.617 5.617 17 C -0.228 4.228 18 H 0.081 0.919 19 C -0.063 4.063 20 N -0.945 5.945 21 Si 0.967 3.033 22 H -0.264 1.264 23 H -0.295 1.295 24 H -0.299 1.299 25 C 0.136 3.864 26 C -0.072 4.072 27 C -0.125 4.125 28 C -0.127 4.127 29 C -0.104 4.104 30 C -0.030 4.030 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.406 0.594 37 H -0.017 1.017 38 H 0.071 0.929 39 H 0.241 0.759 40 H 0.034 0.966 41 H 0.023 0.977 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.031 0.969 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.114 0.886 50 H 0.134 0.866 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.135 12.725 -14.543 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 N -0.289 5.289 4 C 0.001 3.999 5 N -0.171 5.171 6 N -0.183 5.183 7 C 0.021 3.979 8 C -0.127 4.127 9 H 0.163 0.837 10 C 0.309 3.691 11 O -0.446 6.446 12 N -0.344 5.344 13 C 0.032 3.968 14 H 0.103 0.897 15 C 0.027 3.973 16 N -0.343 5.343 17 C -0.357 4.357 18 H 0.099 0.901 19 C -0.256 4.256 20 N -0.595 5.595 21 Si 0.797 3.203 22 H -0.189 1.189 23 H -0.222 1.222 24 H -0.227 1.227 25 C 0.011 3.989 26 C -0.073 4.073 27 C -0.182 4.182 28 C -0.185 4.185 29 C -0.142 4.142 30 C -0.069 4.069 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.244 0.756 37 H 0.001 0.999 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.041 0.959 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.051 0.949 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.132 0.868 50 H 0.152 0.848 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.939 12.483 -13.830 19.274 hybrid contribution -0.306 -1.535 1.325 2.050 sum -5.245 10.948 -12.505 17.428 Atomic orbital electron populations 1.20243 0.81330 1.04808 1.04954 1.25232 0.99866 0.85148 0.97296 1.70216 1.00389 1.31067 1.27199 1.25149 0.95959 0.83996 0.94826 1.50151 1.05343 1.06421 1.55211 1.77942 0.87434 1.24008 1.28882 1.21657 0.78687 0.93978 1.03571 1.21662 0.89562 0.96058 1.05430 0.83668 1.20375 0.88297 0.81044 0.79373 1.90713 1.48778 1.67836 1.37237 1.45777 1.19820 1.21814 1.46942 1.22179 0.85837 0.92817 0.95963 0.89652 1.21969 0.93937 0.86493 0.94942 1.44734 1.60544 1.25766 1.03253 1.19420 1.24024 1.02633 0.89618 0.90095 1.25479 1.02314 0.99820 0.97951 1.70093 1.49998 1.29302 1.10081 0.85162 0.77598 0.78619 0.78938 1.18851 1.22216 1.22655 1.21711 0.96816 0.96199 0.84163 1.21808 0.96837 0.93470 0.95228 1.21702 1.00945 1.01745 0.93845 1.21694 0.93093 1.02205 1.01463 1.21551 0.99716 0.93790 0.99136 1.20638 0.84032 0.95190 1.07082 0.88197 0.89576 0.88363 0.87550 0.91569 0.75648 0.99872 0.91109 0.94876 0.94794 0.95913 0.90965 0.90719 0.92231 0.94926 0.90432 0.90938 0.92551 0.86814 0.84775 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.99 10.51 71.24 0.75 -0.24 16 2 C 0.21 5.78 8.15 138.48 1.13 6.91 16 3 N -0.56 -15.63 11.18 -179.30 -2.01 -17.64 16 4 C 0.28 7.01 7.72 138.37 1.07 8.08 16 5 N -0.38 -11.07 4.04 -338.34 -1.37 -12.44 16 6 N -0.35 -11.47 12.74 -51.07 -0.65 -12.12 16 7 C 0.14 3.94 6.43 86.52 0.56 4.49 16 8 C -0.10 -2.29 2.54 -11.38 -0.03 -2.32 16 9 H 0.15 2.10 8.12 -2.39 -0.02 2.08 16 10 C 0.52 15.79 7.13 87.66 0.63 16.42 16 11 O -0.57 -21.77 15.58 -3.03 -0.05 -21.81 16 12 N -0.69 -20.57 4.60 -435.96 -2.00 -22.58 16 13 C 0.14 4.83 2.56 46.38 0.12 4.95 16 14 H 0.09 3.04 7.63 -2.39 -0.02 3.02 16 15 C 0.15 7.42 5.27 86.85 0.46 7.88 16 16 N -0.62 -30.03 3.40 -691.31 -2.35 -32.39 16 17 C -0.23 -12.45 10.28 84.03 0.86 -11.58 16 18 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 19 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 20 N -0.94 -57.32 10.09 21.65 0.22 -57.10 16 21 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 22 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 24 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 25 C 0.14 5.00 6.42 86.68 0.56 5.56 16 26 C -0.07 -2.07 0.81 -50.99 -0.04 -2.11 16 27 C -0.12 -2.43 8.07 71.98 0.58 -1.85 16 28 C -0.13 -3.35 8.41 71.98 0.61 -2.75 16 29 C -0.10 -2.07 4.68 30.79 0.14 -1.92 16 30 C -0.03 -0.48 6.33 30.06 0.19 -0.29 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.11 2.75 7.88 -2.38 -0.02 2.73 16 35 H 0.07 2.27 8.12 -2.39 -0.02 2.26 16 36 H 0.41 10.24 6.54 -92.71 -0.61 9.64 16 37 H -0.02 -0.90 7.80 -2.39 -0.02 -0.92 16 38 H 0.07 4.08 5.86 -2.39 -0.01 4.07 16 39 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 40 H 0.03 1.18 7.77 -2.38 -0.02 1.16 16 41 H 0.02 0.86 7.84 -2.39 -0.02 0.84 16 42 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.06 1.08 6.35 -2.39 -0.02 1.06 16 45 H 0.03 1.06 7.57 -2.38 -0.02 1.04 16 46 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.06 1.43 8.12 -2.39 -0.02 1.41 16 49 H 0.11 2.02 7.80 -2.39 -0.02 2.00 16 50 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -78.92 400.12 2.19 -76.73 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.33 Total: 22.64 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 8.04 Total: 28.11 kcal Atomic # 7 Polarization: -146.10 SS G_CDS: -8.16 Total: -154.26 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -78.92 2.19 -76.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974876709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.890 kcal (2) G-P(sol) polarization free energy of solvation -78.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds