Wall clock time and date at job start Wed Apr 1 2020 05:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 110.77855 * 2 1 4 4 C 1.54319 * 110.72149 * 236.75987 * 2 1 3 5 5 N 1.47013 * 107.27212 * 219.44753 * 4 2 1 6 6 C 1.36939 * 125.64983 * 178.89821 * 5 4 2 7 7 H 1.08000 * 120.00005 * 359.97438 * 6 5 4 8 8 C 1.38818 * 119.99914 * 179.97438 * 6 5 4 9 9 N 1.31611 * 120.00273 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99640 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47564 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46983 * 120.00217 * 10 8 6 13 13 H 1.48500 * 109.47024 * 239.99610 * 10 8 6 14 14 C 1.47431 * 108.70448 * 358.93895 * 5 4 2 15 15 C 1.54903 * 104.82912 * 24.12978 * 14 5 4 16 16 H 1.08996 * 111.03821 * 204.90067 * 15 14 5 17 17 N 1.46507 * 111.00468 * 81.06478 * 15 14 5 18 18 C 1.34775 * 119.99979 * 92.79995 * 17 15 14 19 19 O 1.21288 * 119.99871 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00318 * 180.02562 * 18 17 15 21 21 N 1.46492 * 109.47453 * 180.02562 * 20 18 17 22 22 N 1.29110 * 126.00682 * 90.02653 * 21 20 18 23 23 N 1.29024 * 110.25877 * 179.97438 * 22 21 20 24 24 C 1.32909 * 108.63488 * 359.97438 * 23 22 21 25 25 C 1.34394 * 126.00964 * 270.02550 * 21 20 18 26 26 C 1.50535 * 129.25386 * 0.15806 * 25 21 20 27 27 C 1.53433 * 108.32633 * 163.53223 * 26 25 21 28 28 C 1.53112 * 109.55588 * 49.71531 * 27 26 25 29 29 C 1.50595 * 129.15855 * 180.17861 * 24 23 22 30 30 H 1.08993 * 109.47057 * 296.76415 * 1 2 3 31 31 H 1.09000 * 109.46586 * 56.76258 * 1 2 3 32 32 H 1.08998 * 109.46900 * 176.76119 * 1 2 3 33 33 H 1.08998 * 109.46776 * 183.23583 * 3 2 1 34 34 H 1.08992 * 109.47565 * 303.23917 * 3 2 1 35 35 H 1.09008 * 109.46802 * 63.23900 * 3 2 1 36 36 H 1.09006 * 109.88165 * 338.86354 * 4 2 1 37 37 H 1.08999 * 109.87982 * 100.02826 * 4 2 1 38 38 H 0.96998 * 120.00275 * 180.02562 * 9 8 6 39 39 H 1.08997 * 110.36501 * 265.29566 * 14 5 4 40 40 H 1.09001 * 110.36495 * 142.97173 * 14 5 4 41 41 H 0.97000 * 120.00215 * 272.80615 * 17 15 14 42 42 H 1.09004 * 109.46724 * 59.99842 * 20 18 17 43 43 H 1.09003 * 109.47035 * 300.00539 * 20 18 17 44 44 H 1.08999 * 109.69801 * 43.81902 * 26 25 21 45 45 H 1.09007 * 109.72231 * 283.25701 * 26 25 21 46 46 H 1.09000 * 109.45504 * 289.69573 * 27 26 25 47 47 H 1.08995 * 109.45051 * 169.73683 * 27 26 25 48 48 H 1.08993 * 109.45621 * 169.90312 * 28 27 26 49 49 H 1.09003 * 109.44817 * 49.97217 * 28 27 26 50 50 H 1.08991 * 109.69444 * 283.11230 * 29 24 23 51 51 H 1.08997 * 109.69090 * 43.69564 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0761 -0.7912 -1.2072 5 7 3.2445 -1.5507 -0.7389 6 6 4.0034 -2.3981 -1.5013 7 1 3.7594 -2.5531 -2.5419 8 6 5.0863 -3.0580 -0.9365 9 7 5.3839 -2.8688 0.3314 10 14 6.1210 -4.2145 -1.9764 11 1 5.5815 -4.2535 -3.3594 12 1 7.5250 -3.7316 -2.0056 13 1 6.0789 -5.5784 -1.3905 14 6 3.4633 -1.2498 0.6877 15 6 2.0790 -0.7954 1.2138 16 1 2.1843 -0.1520 2.0873 17 7 1.2271 -1.9488 1.5145 18 6 1.2025 -2.4618 2.7605 19 8 1.8853 -1.9683 3.6331 20 6 0.3266 -3.6485 3.0697 21 7 0.4767 -4.0118 4.4809 22 7 -0.2299 -3.5568 5.4611 23 7 0.1599 -4.0808 6.5738 24 6 1.1630 -4.9155 6.3218 25 6 1.3740 -4.8772 4.9829 26 6 2.4302 -5.6764 4.2674 27 6 3.4412 -6.1791 5.3063 28 6 2.6957 -6.8405 6.4687 29 6 1.9535 -5.7687 7.2784 30 1 -0.3633 0.4627 0.9175 31 1 -0.3632 0.5633 -0.8596 32 1 -0.3633 -1.0260 -0.0581 33 1 3.1610 1.4061 -0.0580 34 1 1.6752 1.9700 -0.8594 35 1 1.7691 1.9343 0.9177 36 1 1.3130 -1.4758 -1.5775 37 1 2.3742 -0.1024 -1.9976 38 1 6.1408 -3.3296 0.7260 39 1 4.1931 -0.4479 0.7986 40 1 3.7960 -2.1426 1.2170 41 1 0.6808 -2.3433 0.8167 42 1 0.6219 -4.4908 2.4439 43 1 -0.7141 -3.3941 2.8690 44 1 2.9368 -5.0452 3.5373 45 1 1.9697 -6.5254 3.7621 46 1 4.0252 -5.3385 5.6810 47 1 4.1077 -6.9059 4.8420 48 1 3.4098 -7.3525 7.1135 49 1 1.9789 -7.5620 6.0765 50 1 2.6719 -5.1493 7.8153 51 1 1.2783 -6.2474 7.9876 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975040216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:06 Heat of formation + Delta-G solvation = 79.624548 kcal Electronic energy + Delta-G solvation = -32257.678436 eV Core-core repulsion = 28194.577187 eV Total energy + Delta-G solvation = -4063.101249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.29661 -39.90856 -38.13827 -37.05451 -34.66363 -33.97614 -33.24150 -30.82101 -30.65320 -30.07227 -29.02433 -27.80428 -26.69507 -25.70467 -24.14519 -23.57767 -22.63944 -21.87310 -20.57369 -20.01295 -19.58268 -18.85053 -17.51773 -17.20999 -16.80843 -15.95063 -15.76706 -15.30098 -14.96351 -14.54288 -14.07633 -14.04810 -13.97893 -13.86737 -13.81513 -13.63327 -13.40406 -13.26328 -12.91497 -12.58928 -12.21503 -12.18205 -11.99816 -11.86088 -11.46738 -11.38612 -11.28194 -11.22867 -11.10609 -11.04307 -11.03315 -10.88045 -10.53362 -10.37226 -10.32321 -10.24650 -10.08614 -9.91527 -9.79762 -9.49468 -8.80368 -8.69946 -8.56153 -6.92495 -5.73924 -3.17120 1.62207 2.25838 2.67076 2.69453 3.31148 3.37676 3.37968 3.40029 4.17591 4.39258 4.45272 4.64892 4.69797 4.77271 4.77963 4.88487 4.89793 4.95490 5.14842 5.19316 5.30881 5.37898 5.42203 5.48846 5.51893 5.54646 5.69475 5.76648 5.80538 5.86326 5.92998 5.93351 6.01817 6.04907 6.08380 6.09218 6.16150 6.21926 6.29098 6.35541 6.40592 6.49627 6.55342 6.60798 6.63020 6.84993 7.35598 7.52420 7.67432 7.79276 8.26096 8.36497 8.64227 9.11473 9.72866 10.36679 11.28839 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009713 B = 0.003904 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.036591 B = 7171.181225 C = 9460.421942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.129 4.129 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.225 4.225 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.291 1.291 14 C 0.147 3.853 15 C 0.124 3.876 16 H 0.089 0.911 17 N -0.692 5.692 18 C 0.501 3.499 19 O -0.523 6.523 20 C 0.094 3.906 21 N -0.265 5.265 22 N -0.090 5.090 23 N -0.264 5.264 24 C -0.026 4.026 25 C 0.002 3.998 26 C -0.051 4.051 27 C -0.114 4.114 28 C -0.118 4.118 29 C -0.030 4.030 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.023 0.977 37 H 0.025 0.975 38 H 0.252 0.748 39 H 0.022 0.978 40 H 0.112 0.888 41 H 0.399 0.601 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.066 0.934 50 H 0.081 0.919 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 -4.457 5.251 11.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.088 4.088 3 C -0.187 4.187 4 C 0.016 3.984 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.218 1.218 14 C 0.021 3.979 15 C 0.019 3.981 16 H 0.107 0.893 17 N -0.343 5.343 18 C 0.283 3.717 19 O -0.398 6.398 20 C -0.032 4.032 21 N -0.056 5.056 22 N -0.068 5.068 23 N -0.128 5.128 24 C -0.166 4.166 25 C -0.132 4.132 26 C -0.090 4.090 27 C -0.152 4.152 28 C -0.156 4.156 29 C -0.069 4.069 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.130 0.870 41 H 0.234 0.766 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.099 0.901 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.227 -3.248 6.275 12.430 hybrid contribution 1.138 -1.187 -1.579 2.280 sum -9.088 -4.435 4.697 11.150 Atomic orbital electron populations 1.21720 0.94514 1.01200 1.01430 1.21852 0.94913 0.95790 0.96223 1.21693 1.01936 0.94055 1.00997 1.21425 0.90275 0.93000 0.93685 1.44482 1.30738 1.50226 1.07298 1.19087 1.06471 1.16777 0.92960 0.90476 1.24774 0.98648 1.00597 0.96347 1.69803 1.29871 1.46060 1.10870 0.86058 0.80256 0.80393 0.79121 1.20570 1.21731 1.21785 1.22300 0.89040 1.01381 0.85154 1.22601 0.93177 0.85790 0.96559 0.89302 1.45652 1.45829 1.33071 1.09758 1.20146 0.83247 0.84690 0.83569 1.90797 1.42385 1.60467 1.46187 1.21885 1.03873 0.99969 0.77493 1.46221 1.23203 1.27961 1.08213 1.78529 1.18573 1.20002 0.89674 1.74737 1.11862 1.09081 1.17163 1.21558 0.99511 1.02661 0.92856 1.21802 0.97498 0.98722 0.95134 1.20246 0.92905 0.97897 0.97973 1.21558 0.97186 1.01041 0.95414 1.21650 0.99353 0.97428 0.97202 1.19931 0.96982 0.94846 0.95190 0.92783 0.92626 0.92951 0.91731 0.92592 0.93028 0.95964 0.95748 0.93709 0.96034 0.87005 0.76607 0.85027 0.84946 0.89306 0.89851 0.90951 0.90444 0.90738 0.91541 0.90092 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.08 37.16 0.30 -1.27 16 2 C -0.09 -1.33 0.80 -152.67 -0.12 -1.45 16 3 C -0.13 -1.87 8.41 37.16 0.31 -1.55 16 4 C 0.14 2.63 6.41 -3.07 -0.02 2.61 16 5 N -0.60 -13.97 3.39 -170.08 -0.58 -14.55 16 6 C -0.22 -5.83 10.27 -15.06 -0.15 -5.98 16 7 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -25.59 10.09 55.49 0.56 -25.03 16 10 Si 0.91 21.04 29.55 -169.99 -5.02 16.01 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.15 3.37 5.27 -2.53 -0.01 3.36 16 15 C 0.12 2.21 2.67 -65.78 -0.18 2.04 16 16 H 0.09 1.69 7.44 -51.93 -0.39 1.30 16 17 N -0.69 -10.64 4.55 -51.73 -0.24 -10.87 16 18 C 0.50 8.13 7.90 -10.99 -0.09 8.05 16 19 O -0.52 -11.01 16.07 5.55 0.09 -10.92 16 20 C 0.09 1.15 6.72 -5.20 -0.03 1.11 16 21 N -0.27 -4.08 2.82 -58.44 -0.16 -4.24 16 22 N -0.09 -1.59 13.19 60.35 0.80 -0.79 16 23 N -0.26 -4.67 12.40 33.16 0.41 -4.25 16 24 C -0.03 -0.40 7.11 -83.12 -0.59 -0.99 16 25 C 0.00 0.03 6.76 -82.50 -0.56 -0.53 16 26 C -0.05 -0.63 5.95 -27.74 -0.16 -0.79 16 27 C -0.11 -1.21 5.90 -26.45 -0.16 -1.37 16 28 C -0.12 -1.07 5.90 -26.43 -0.16 -1.23 16 29 C -0.03 -0.34 6.30 -27.69 -0.17 -0.51 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.57 6.48 -51.93 -0.34 0.24 16 33 H 0.06 1.07 7.57 -51.93 -0.39 0.67 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.02 0.40 7.77 -51.93 -0.40 -0.01 16 37 H 0.02 0.47 7.84 -51.93 -0.41 0.06 16 38 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.02 0.55 7.80 -51.93 -0.41 0.14 16 40 H 0.11 2.98 5.88 -51.93 -0.31 2.67 16 41 H 0.40 5.17 7.18 -40.82 -0.29 4.88 16 42 H 0.13 1.25 7.96 -51.93 -0.41 0.83 16 43 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 50 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -34.06 401.17 -8.37 -42.44 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.38 Total: 4.98 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.89 Total: 1.18 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.79 Total: -59.74 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.06 -8.37 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975040216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.062 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds