Wall clock time and date at job start Wed Apr 1 2020 05:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.91199 * 2 1 4 4 C 1.54905 * 111.00248 * 236.10175 * 2 1 3 5 5 N 1.47420 * 104.83189 * 278.92747 * 4 2 1 6 6 C 1.36944 * 125.65042 * 155.82224 * 5 4 2 7 7 H 1.08003 * 119.99357 * 0.02562 * 6 5 4 8 8 C 1.38804 * 120.00191 * 180.02562 * 6 5 4 9 9 N 1.31622 * 120.00003 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00105 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47148 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47396 * 119.99611 * 10 8 6 13 13 H 1.48499 * 109.47517 * 239.99928 * 10 8 6 14 14 C 1.47023 * 108.70460 * 335.87765 * 5 4 2 15 15 C 1.54327 * 107.27072 * 1.05258 * 14 5 4 16 16 H 1.09004 * 110.87002 * 140.62654 * 15 14 5 17 17 N 1.46499 * 110.72202 * 263.83282 * 15 14 5 18 18 C 1.34777 * 119.99665 * 268.80009 * 17 15 14 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 15 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 15 21 21 N 1.46509 * 109.47002 * 179.97438 * 20 18 17 22 22 N 1.29104 * 126.00431 * 90.02128 * 21 20 18 23 23 N 1.29025 * 110.25569 * 179.91074 * 22 21 20 24 24 C 1.32915 * 108.63666 * 359.97438 * 23 22 21 25 25 C 1.34395 * 126.00295 * 269.71281 * 21 20 18 26 26 C 1.50532 * 129.25367 * 0.88433 * 25 21 20 27 27 C 1.53437 * 108.38180 * 163.09457 * 26 25 21 28 28 C 1.53104 * 109.55291 * 49.50682 * 27 26 25 29 29 C 1.50589 * 129.16469 * 180.18472 * 24 23 22 30 30 H 1.08999 * 109.47139 * 296.09339 * 1 2 3 31 31 H 1.08998 * 109.47673 * 56.09432 * 1 2 3 32 32 H 1.08997 * 109.47001 * 176.09933 * 1 2 3 33 33 H 1.09000 * 109.47038 * 183.90250 * 3 2 1 34 34 H 1.08999 * 109.47338 * 303.90385 * 3 2 1 35 35 H 1.08999 * 109.47443 * 63.90384 * 3 2 1 36 36 H 1.08999 * 110.36817 * 37.77097 * 4 2 1 37 37 H 1.09007 * 110.36413 * 159.98332 * 4 2 1 38 38 H 0.97007 * 119.99774 * 179.97438 * 9 8 6 39 39 H 1.09006 * 109.87863 * 241.63787 * 14 5 4 40 40 H 1.08997 * 109.88506 * 120.47372 * 14 5 4 41 41 H 0.97001 * 119.99790 * 88.51722 * 17 15 14 42 42 H 1.09003 * 109.47112 * 299.99065 * 20 18 17 43 43 H 1.08993 * 109.47916 * 59.99687 * 20 18 17 44 44 H 1.08995 * 109.83729 * 43.26574 * 26 25 21 45 45 H 1.09004 * 109.49475 * 282.71467 * 26 25 21 46 46 H 1.09004 * 109.45797 * 289.47893 * 27 26 25 47 47 H 1.09006 * 109.44504 * 169.52434 * 27 26 25 48 48 H 1.08996 * 109.45692 * 169.89056 * 28 27 26 49 49 H 1.09002 * 109.45602 * 49.95295 * 28 27 26 50 50 H 1.09008 * 109.68922 * 283.17217 * 29 24 23 51 51 H 1.09003 * 109.69279 * 43.70418 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0852 -0.8065 -1.2003 5 7 2.0140 -2.2158 -0.7734 6 6 1.9445 -3.2998 -1.6072 7 1 1.9390 -3.1580 -2.6779 8 6 1.8810 -4.5808 -1.0764 9 7 1.8871 -4.7535 0.2284 10 14 1.7869 -6.0596 -2.2138 11 1 1.7958 -5.5994 -3.6258 12 1 2.9561 -6.9434 -1.9745 13 1 0.5348 -6.8116 -1.9457 14 6 2.0286 -2.2646 0.6960 15 6 2.0862 -0.8078 1.2022 16 1 1.4541 -0.6767 2.0805 17 7 3.4667 -0.4154 1.4961 18 6 3.9673 -0.5891 2.7354 19 8 3.2733 -1.0655 3.6085 20 6 5.3893 -0.1911 3.0361 21 7 5.6899 -0.4777 4.4411 22 7 6.1697 -1.5831 4.9044 23 7 6.3176 -1.5045 6.1838 24 6 5.9211 -0.3006 6.5840 25 6 5.5200 0.3660 5.4734 26 6 4.9802 1.7712 5.4761 27 6 4.5960 2.1392 6.9153 28 6 5.7556 1.8035 7.8569 29 6 5.8995 0.2806 7.9730 30 1 -0.3633 0.4520 0.9229 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0699 33 1 3.1635 1.4027 -0.0699 34 1 1.6703 1.9733 -0.8529 35 1 1.7835 1.9300 0.9229 36 1 1.4671 -0.6460 -2.0837 37 1 3.1176 -0.5218 -1.4037 38 1 1.8424 -5.6488 0.5994 39 1 2.9065 -2.8116 1.0399 40 1 1.1220 -2.7479 1.0599 41 1 4.0218 -0.0344 0.7978 42 1 6.0677 -0.7560 2.3967 43 1 5.5159 0.8749 2.8481 44 1 4.1011 1.8310 4.8345 45 1 5.7470 2.4562 5.1141 46 1 3.7125 1.5735 7.2112 47 1 4.3797 3.2061 6.9716 48 1 5.5572 2.2257 8.8421 49 1 6.6791 2.2258 7.4606 50 1 5.0544 -0.1265 8.5284 51 1 6.8288 0.0366 8.4877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975040218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:10 Heat of formation + Delta-G solvation = 80.949927 kcal Electronic energy + Delta-G solvation = -31845.901508 eV Core-core repulsion = 27782.857731 eV Total energy + Delta-G solvation = -4063.043777 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.38157 -39.98826 -38.16177 -37.23082 -34.76183 -34.01746 -33.19589 -30.85309 -30.73768 -30.19722 -29.10004 -27.73766 -26.72934 -25.69538 -24.30340 -23.61563 -22.78530 -21.93566 -20.57123 -20.09997 -19.72909 -18.90961 -17.61173 -17.30473 -16.74814 -16.05209 -15.71200 -15.42036 -15.04982 -14.60894 -14.23659 -14.15429 -14.06067 -13.98706 -13.93685 -13.65234 -13.59668 -13.34782 -12.74792 -12.63031 -12.36219 -12.09393 -12.06803 -11.77063 -11.56355 -11.46503 -11.34460 -11.25358 -11.20306 -11.15973 -11.04456 -10.82285 -10.52215 -10.49221 -10.37390 -10.31867 -10.11467 -9.92889 -9.70709 -9.57789 -8.81075 -8.72316 -8.61463 -6.87917 -5.72596 -3.08209 1.53293 2.17072 2.58539 2.61237 3.28023 3.38932 3.43676 3.47241 4.03310 4.30102 4.46796 4.47693 4.56181 4.60081 4.69888 4.71590 4.79990 4.84513 5.12542 5.16615 5.17897 5.19871 5.28492 5.37253 5.49518 5.54177 5.57472 5.63024 5.69617 5.71840 5.81464 5.88308 5.91212 5.96564 6.01703 6.06839 6.07955 6.11648 6.25339 6.28052 6.45015 6.50318 6.52445 6.56512 6.59560 6.84134 7.45183 7.54943 7.63566 7.80345 8.20380 8.27533 8.59074 9.17900 9.78867 10.42950 11.37992 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014206 B = 0.002890 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.585711 B = 9685.491131 C =11055.128922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.130 4.130 4 C 0.143 3.857 5 N -0.602 5.602 6 C -0.232 4.232 7 H 0.078 0.922 8 C -0.006 4.006 9 N -0.917 5.917 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.175 3.825 15 C 0.125 3.875 16 H 0.090 0.910 17 N -0.701 5.701 18 C 0.499 3.501 19 O -0.518 6.518 20 C 0.093 3.907 21 N -0.264 5.264 22 N -0.078 5.078 23 N -0.263 5.263 24 C -0.023 4.023 25 C -0.011 4.011 26 C -0.045 4.045 27 C -0.114 4.114 28 C -0.118 4.118 29 C -0.032 4.032 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.015 0.985 38 H 0.253 0.747 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.398 0.602 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.081 0.919 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.252 21.000 8.870 23.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.188 4.188 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.360 4.360 7 H 0.096 0.904 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.741 3.259 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.049 3.951 15 C 0.020 3.980 16 H 0.108 0.892 17 N -0.353 5.353 18 C 0.281 3.719 19 O -0.393 6.393 20 C -0.033 4.033 21 N -0.055 5.055 22 N -0.056 5.056 23 N -0.127 5.127 24 C -0.163 4.163 25 C -0.145 4.145 26 C -0.085 4.085 27 C -0.153 4.153 28 C -0.156 4.156 29 C -0.071 4.071 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.233 0.767 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.100 0.900 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.217 18.929 9.129 21.916 hybrid contribution -0.145 0.128 -1.034 1.052 sum 6.072 19.058 8.095 21.577 Atomic orbital electron populations 1.21601 0.93179 1.03056 1.00565 1.22027 0.96457 0.94096 0.96474 1.21674 1.00137 0.95582 1.01415 1.21634 0.96553 0.85782 0.94345 1.44435 1.86985 0.99726 1.01712 1.19045 1.44207 0.83903 0.88891 0.90390 1.24825 1.02039 0.97453 0.95967 1.69960 1.56382 1.20870 1.09166 0.86071 0.77316 0.82982 0.79504 1.20549 1.21760 1.21736 1.21528 1.01787 0.88267 0.83516 1.22560 0.80296 0.97828 0.97281 0.89199 1.45890 1.15271 1.63711 1.10380 1.20196 0.88108 0.79881 0.83670 1.90814 1.59698 1.42879 1.45948 1.21897 0.97770 1.04905 0.78692 1.46268 1.41348 1.10116 1.07802 1.78666 1.16549 1.05146 1.05204 1.74806 1.18088 1.17702 1.02120 1.21586 1.05907 0.92007 0.96793 1.21723 1.07818 0.97132 0.87803 1.20177 1.00578 0.88392 0.99316 1.21571 0.99022 1.01692 0.92967 1.21626 0.98881 0.95048 1.00059 1.19929 1.03218 0.94211 0.89725 0.93350 0.92769 0.91141 0.93104 0.92533 0.92899 0.94017 0.96726 0.93637 0.93339 0.92709 0.76701 0.84538 0.85320 0.90122 0.89911 0.91008 0.90587 0.90682 0.91479 0.90045 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.57 37.16 0.32 -1.57 16 2 C -0.09 -1.35 0.83 -152.36 -0.13 -1.47 16 3 C -0.13 -1.44 8.22 37.16 0.31 -1.13 16 4 C 0.14 2.65 6.12 -2.53 -0.02 2.63 16 5 N -0.60 -14.48 3.38 -170.07 -0.57 -15.06 16 6 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 7 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 8 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 9 N -0.92 -27.32 10.31 55.49 0.57 -26.74 16 10 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 C 0.17 4.16 4.79 -3.06 -0.01 4.14 16 15 C 0.12 2.21 2.59 -66.10 -0.17 2.04 16 16 H 0.09 1.69 7.46 -51.93 -0.39 1.30 16 17 N -0.70 -10.14 4.45 -52.03 -0.23 -10.37 16 18 C 0.50 7.69 7.90 -10.99 -0.09 7.60 16 19 O -0.52 -10.65 16.08 5.55 0.09 -10.56 16 20 C 0.09 1.05 6.72 -5.19 -0.03 1.01 16 21 N -0.26 -3.87 2.82 -58.43 -0.16 -4.03 16 22 N -0.08 -1.42 13.19 60.35 0.80 -0.62 16 23 N -0.26 -4.65 12.40 33.16 0.41 -4.24 16 24 C -0.02 -0.33 7.11 -83.12 -0.59 -0.92 16 25 C -0.01 -0.14 6.76 -82.50 -0.56 -0.70 16 26 C -0.05 -0.39 5.94 -27.74 -0.16 -0.55 16 27 C -0.11 -0.82 5.90 -26.45 -0.16 -0.97 16 28 C -0.12 -0.81 5.89 -26.46 -0.16 -0.96 16 29 C -0.03 -0.31 6.30 -27.72 -0.17 -0.48 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.28 7.91 -51.93 -0.41 0.87 16 33 H 0.05 0.49 6.48 -51.93 -0.34 0.15 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 37 H 0.02 0.26 7.98 -51.92 -0.41 -0.15 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.05 1.35 7.41 -51.93 -0.38 0.96 16 40 H 0.05 1.50 7.38 -51.93 -0.38 1.12 16 41 H 0.40 4.60 7.11 -40.82 -0.29 4.30 16 42 H 0.14 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.13 0.81 7.96 -51.93 -0.41 0.40 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 50 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 51 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 402.61 15.07 6.07 6.07 Total: -1.00 -36.88 402.61 -8.41 -45.29 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.48 Total: 1.15 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.88 Total: 1.95 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.81 Total: -61.06 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.88 -8.41 -45.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975040218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.243 kcal (2) G-P(sol) polarization free energy of solvation -36.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds