Wall clock time and date at job start Wed Apr 1 2020 05:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 110.91199 * 2 1 4 4 C 1.54905 * 111.00248 * 236.10175 * 2 1 3 5 5 N 1.47420 * 104.83189 * 278.92747 * 4 2 1 6 6 C 1.36944 * 125.65042 * 155.82224 * 5 4 2 7 7 H 1.08003 * 119.99357 * 0.02562 * 6 5 4 8 8 C 1.38804 * 120.00191 * 180.02562 * 6 5 4 9 9 N 1.31622 * 120.00003 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00105 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47148 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.47396 * 119.99611 * 10 8 6 13 13 H 1.48499 * 109.47517 * 239.99928 * 10 8 6 14 14 C 1.47023 * 108.70460 * 335.87765 * 5 4 2 15 15 C 1.54327 * 107.27072 * 1.05258 * 14 5 4 16 16 H 1.09004 * 110.87002 * 140.62654 * 15 14 5 17 17 N 1.46499 * 110.72202 * 263.83282 * 15 14 5 18 18 C 1.34777 * 119.99665 * 268.80009 * 17 15 14 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 15 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 15 21 21 N 1.46509 * 109.47002 * 179.97438 * 20 18 17 22 22 N 1.29104 * 126.00431 * 90.02128 * 21 20 18 23 23 N 1.29025 * 110.25569 * 179.91074 * 22 21 20 24 24 C 1.32915 * 108.63666 * 359.97438 * 23 22 21 25 25 C 1.34395 * 126.00295 * 269.71281 * 21 20 18 26 26 C 1.50532 * 129.25367 * 0.88433 * 25 21 20 27 27 C 1.53437 * 108.38180 * 163.09457 * 26 25 21 28 28 C 1.53104 * 109.55291 * 49.50682 * 27 26 25 29 29 C 1.50589 * 129.16469 * 180.18472 * 24 23 22 30 30 H 1.08999 * 109.47139 * 296.09339 * 1 2 3 31 31 H 1.08998 * 109.47673 * 56.09432 * 1 2 3 32 32 H 1.08997 * 109.47001 * 176.09933 * 1 2 3 33 33 H 1.09000 * 109.47038 * 183.90250 * 3 2 1 34 34 H 1.08999 * 109.47338 * 303.90385 * 3 2 1 35 35 H 1.08999 * 109.47443 * 63.90384 * 3 2 1 36 36 H 1.08999 * 110.36817 * 37.77097 * 4 2 1 37 37 H 1.09007 * 110.36413 * 159.98332 * 4 2 1 38 38 H 0.97007 * 119.99774 * 179.97438 * 9 8 6 39 39 H 1.09006 * 109.87863 * 241.63787 * 14 5 4 40 40 H 1.08997 * 109.88506 * 120.47372 * 14 5 4 41 41 H 0.97001 * 119.99790 * 88.51722 * 17 15 14 42 42 H 1.09003 * 109.47112 * 299.99065 * 20 18 17 43 43 H 1.08993 * 109.47916 * 59.99687 * 20 18 17 44 44 H 1.08995 * 109.83729 * 43.26574 * 26 25 21 45 45 H 1.09004 * 109.49475 * 282.71467 * 26 25 21 46 46 H 1.09004 * 109.45797 * 289.47893 * 27 26 25 47 47 H 1.09006 * 109.44504 * 169.52434 * 27 26 25 48 48 H 1.08996 * 109.45692 * 169.89056 * 28 27 26 49 49 H 1.09002 * 109.45602 * 49.95295 * 28 27 26 50 50 H 1.09008 * 109.68922 * 283.17217 * 29 24 23 51 51 H 1.09003 * 109.69279 * 43.70418 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0852 -0.8065 -1.2003 5 7 2.0140 -2.2158 -0.7734 6 6 1.9445 -3.2998 -1.6072 7 1 1.9390 -3.1580 -2.6779 8 6 1.8810 -4.5808 -1.0764 9 7 1.8871 -4.7535 0.2284 10 14 1.7869 -6.0596 -2.2138 11 1 1.7958 -5.5994 -3.6258 12 1 2.9561 -6.9434 -1.9745 13 1 0.5348 -6.8116 -1.9457 14 6 2.0286 -2.2646 0.6960 15 6 2.0862 -0.8078 1.2022 16 1 1.4541 -0.6767 2.0805 17 7 3.4667 -0.4154 1.4961 18 6 3.9673 -0.5891 2.7354 19 8 3.2733 -1.0655 3.6085 20 6 5.3893 -0.1911 3.0361 21 7 5.6899 -0.4777 4.4411 22 7 6.1697 -1.5831 4.9044 23 7 6.3176 -1.5045 6.1838 24 6 5.9211 -0.3006 6.5840 25 6 5.5200 0.3660 5.4734 26 6 4.9802 1.7712 5.4761 27 6 4.5960 2.1392 6.9153 28 6 5.7556 1.8035 7.8569 29 6 5.8995 0.2806 7.9730 30 1 -0.3633 0.4520 0.9229 31 1 -0.3634 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0699 33 1 3.1635 1.4027 -0.0699 34 1 1.6703 1.9733 -0.8529 35 1 1.7835 1.9300 0.9229 36 1 1.4671 -0.6460 -2.0837 37 1 3.1176 -0.5218 -1.4037 38 1 1.8424 -5.6488 0.5994 39 1 2.9065 -2.8116 1.0399 40 1 1.1220 -2.7479 1.0599 41 1 4.0218 -0.0344 0.7978 42 1 6.0677 -0.7560 2.3967 43 1 5.5159 0.8749 2.8481 44 1 4.1011 1.8310 4.8345 45 1 5.7470 2.4562 5.1141 46 1 3.7125 1.5735 7.2112 47 1 4.3797 3.2061 6.9716 48 1 5.5572 2.2257 8.8421 49 1 6.6791 2.2258 7.4606 50 1 5.0544 -0.1265 8.5284 51 1 6.8288 0.0366 8.4877 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975040218.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:09 Heat of formation + Delta-G solvation = 54.233806 kcal Electronic energy + Delta-G solvation = -31847.060005 eV Core-core repulsion = 27782.857731 eV Total energy + Delta-G solvation = -4064.202275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -44.44179 -41.36077 -39.59909 -37.93508 -35.86753 -35.74295 -34.63055 -32.62813 -31.61153 -31.10448 -30.38172 -29.05759 -27.96112 -27.37858 -25.26654 -25.05126 -23.60640 -23.21326 -22.07354 -21.50850 -20.54111 -20.20150 -18.78213 -18.72644 -18.34179 -17.16129 -17.07933 -16.76230 -16.29731 -15.93406 -15.67909 -15.44724 -15.14561 -14.92723 -14.83929 -14.72768 -14.60777 -14.46688 -14.07659 -13.81885 -13.55560 -13.45886 -13.17118 -13.04020 -12.96689 -12.85473 -12.74838 -12.58249 -12.53893 -12.22702 -12.09761 -11.96490 -11.89017 -11.80147 -11.75939 -11.56084 -11.47146 -11.33001 -11.31828 -10.85720 -10.73232 -10.12106 -9.81858 -8.91796 -7.87054 -5.23298 0.46781 1.22167 1.37253 1.41418 1.42258 1.51843 1.52727 2.11105 2.46237 3.19396 3.32196 3.43046 3.49027 3.57176 3.71668 3.74162 3.89535 3.92187 3.94575 4.03335 4.07141 4.14804 4.38765 4.44993 4.49178 4.58498 4.60970 4.63490 4.66218 4.85502 4.89102 4.93927 4.96764 5.03145 5.03453 5.11118 5.13314 5.17031 5.21995 5.24164 5.26965 5.35365 5.37058 5.44365 5.48540 5.56643 5.57703 5.66405 5.70366 6.14497 6.40197 7.03916 7.09687 7.46681 7.75916 8.38796 9.21990 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014206 B = 0.002890 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.585711 B = 9685.491131 C =11055.128922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.123 4.123 4 C 0.136 3.864 5 N -0.620 5.620 6 C -0.231 4.231 7 H 0.090 0.910 8 C -0.073 4.073 9 N -0.955 5.955 10 Si 0.975 3.025 11 H -0.258 1.258 12 H -0.298 1.298 13 H -0.297 1.297 14 C 0.191 3.809 15 C 0.141 3.859 16 H 0.077 0.923 17 N -0.686 5.686 18 C 0.499 3.501 19 O -0.577 6.577 20 C 0.095 3.905 21 N -0.267 5.267 22 N -0.136 5.136 23 N -0.303 5.303 24 C -0.044 4.044 25 C -0.001 4.001 26 C -0.046 4.046 27 C -0.114 4.114 28 C -0.110 4.110 29 C -0.035 4.035 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.039 0.961 38 H 0.241 0.759 39 H -0.003 1.003 40 H 0.000 1.000 41 H 0.417 0.583 42 H 0.152 0.848 43 H 0.192 0.808 44 H 0.084 0.916 45 H 0.120 0.880 46 H 0.052 0.948 47 H 0.108 0.892 48 H 0.098 0.902 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.136 26.223 7.493 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.181 4.181 4 C 0.011 3.989 5 N -0.346 5.346 6 C -0.360 4.360 7 H 0.107 0.893 8 C -0.265 4.265 9 N -0.604 5.604 10 Si 0.804 3.196 11 H -0.181 1.181 12 H -0.226 1.226 13 H -0.224 1.224 14 C 0.065 3.935 15 C 0.035 3.965 16 H 0.095 0.905 17 N -0.338 5.338 18 C 0.284 3.716 19 O -0.456 6.456 20 C -0.029 4.029 21 N -0.059 5.059 22 N -0.113 5.113 23 N -0.167 5.167 24 C -0.185 4.185 25 C -0.136 4.136 26 C -0.085 4.085 27 C -0.152 4.152 28 C -0.148 4.148 29 C -0.074 4.074 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.015 0.985 40 H 0.018 0.982 41 H 0.256 0.744 42 H 0.169 0.831 43 H 0.209 0.791 44 H 0.102 0.898 45 H 0.138 0.862 46 H 0.071 0.929 47 H 0.127 0.873 48 H 0.116 0.884 49 H 0.096 0.904 50 H 0.095 0.905 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.136 24.204 7.674 26.375 hybrid contribution -0.474 -1.459 -0.614 1.652 sum 6.663 22.746 7.060 24.731 Atomic orbital electron populations 1.21610 0.93207 1.00857 1.02664 1.21993 0.96422 0.96237 0.92675 1.21663 1.01416 0.91770 1.03215 1.21958 0.98073 0.82963 0.95894 1.44685 1.86558 1.01793 1.01570 1.19509 1.41693 0.84931 0.89843 0.89274 1.25676 1.03176 1.00492 0.97173 1.70248 1.58763 1.20261 1.11169 0.85052 0.76334 0.79424 0.78817 1.18146 1.22585 1.22436 1.21077 0.96876 0.91675 0.83899 1.22061 0.82319 0.94411 0.97721 0.90535 1.45631 1.14203 1.63058 1.10917 1.20946 0.89438 0.78323 0.82943 1.90801 1.61682 1.45386 1.47769 1.22250 0.94327 1.08765 0.77567 1.46537 1.40588 1.09562 1.09176 1.78566 1.19632 1.07345 1.05748 1.74712 1.19503 1.19954 1.02518 1.22407 1.05690 0.91191 0.99196 1.22572 1.05653 0.98592 0.86799 1.20488 1.01517 0.85894 1.00553 1.21628 0.98226 1.03333 0.92044 1.21629 0.99347 0.92325 1.01503 1.20144 1.03265 0.96528 0.87467 0.91648 0.90175 0.95584 0.90993 0.90463 0.91392 0.93405 0.94346 0.95017 0.98490 0.98181 0.74420 0.83069 0.79103 0.89784 0.86240 0.92929 0.87336 0.88360 0.90379 0.90502 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 8.57 71.98 0.62 -2.96 16 2 C -0.07 -2.01 0.83 -50.79 -0.04 -2.05 16 3 C -0.12 -2.05 8.22 71.98 0.59 -1.46 16 4 C 0.14 4.74 6.12 86.85 0.53 5.27 16 5 N -0.62 -30.44 3.38 -691.99 -2.34 -32.78 16 6 C -0.23 -12.71 10.28 84.03 0.86 -11.85 16 7 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 8 C -0.07 -4.25 5.49 84.86 0.47 -3.78 16 9 N -0.95 -60.92 10.31 21.65 0.22 -60.69 16 10 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 14 C 0.19 9.69 4.79 86.73 0.42 10.10 16 15 C 0.14 5.01 2.59 46.18 0.12 5.13 16 16 H 0.08 2.97 7.46 -2.39 -0.02 2.95 16 17 N -0.69 -18.79 4.45 -436.91 -1.95 -20.73 16 18 C 0.50 15.05 7.90 87.66 0.69 15.74 16 19 O -0.58 -24.65 16.08 -3.04 -0.05 -24.70 16 20 C 0.09 1.92 6.72 85.63 0.58 2.50 16 21 N -0.27 -7.69 2.82 -338.77 -0.95 -8.65 16 22 N -0.14 -5.17 13.19 37.02 0.49 -4.69 16 23 N -0.30 -11.33 12.40 -48.99 -0.61 -11.93 16 24 C -0.04 -1.25 7.11 41.75 0.30 -0.95 16 25 C 0.00 -0.03 6.76 41.50 0.28 0.25 16 26 C -0.05 -0.60 5.94 29.94 0.18 -0.42 16 27 C -0.11 -1.24 5.90 30.78 0.18 -1.06 16 28 C -0.11 -1.17 5.89 30.77 0.18 -0.98 16 29 C -0.03 -0.66 6.30 29.95 0.19 -0.47 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.02 0.95 7.91 -2.39 -0.02 0.93 16 33 H 0.07 0.92 6.48 -2.39 -0.02 0.91 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.64 8.05 -2.39 -0.02 1.62 16 37 H 0.04 1.21 7.98 -2.38 -0.02 1.19 16 38 H 0.24 15.25 8.31 -92.70 -0.77 14.48 16 39 H 0.00 -0.19 7.41 -2.38 -0.02 -0.20 16 40 H 0.00 0.00 7.38 -2.39 -0.02 -0.02 16 41 H 0.42 8.15 7.11 -92.71 -0.66 7.49 16 42 H 0.15 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.19 1.38 7.96 -2.39 -0.02 1.36 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.05 0.78 8.12 -2.38 -0.02 0.76 16 47 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 48 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.08 0.69 8.12 -2.39 -0.02 0.68 16 50 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 51 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -92.92 402.61 3.25 -89.66 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.27 Total: 12.32 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.14 Total: 13.01 kcal Atomic # 7 Polarization: -134.34 SS G_CDS: -5.13 Total: -139.47 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -92.92 3.25 -89.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975040218.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.898 kcal (2) G-P(sol) polarization free energy of solvation -92.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds