Wall clock time and date at job start Wed Apr 1 2020 05:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40449 * 126.82432 * 2 1 4 4 C 1.30712 * 106.79184 * 180.02562 * 3 2 1 5 5 C 1.50707 * 125.52637 * 179.97438 * 4 3 2 6 6 C 1.53005 * 117.49651 * 8.63977 * 5 4 3 7 7 C 1.53001 * 60.00179 * 252.51387 * 6 5 4 8 8 N 1.33242 * 108.95012 * 359.75485 * 4 3 2 9 9 C 1.30834 * 109.82395 * 0.40717 * 8 4 3 10 10 C 1.50703 * 125.95804 * 179.86463 * 9 8 4 11 11 C 1.50701 * 109.47064 * 269.68846 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.64676 * 31.86261 * 14 13 11 16 16 C 1.54324 * 110.72210 * 268.52280 * 14 13 11 17 17 N 1.47021 * 107.27185 * 263.83217 * 16 14 13 18 18 C 1.36937 * 125.64479 * 181.10276 * 17 16 14 19 19 H 1.07998 * 119.99732 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00351 * 359.95024 * 18 17 16 21 21 N 1.31620 * 120.00245 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00247 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.46820 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47005 * 119.99818 * 22 20 18 25 25 H 1.48501 * 109.46761 * 240.00025 * 22 20 18 26 26 C 1.47422 * 108.70504 * 1.06157 * 17 16 14 27 27 C 1.54916 * 104.82909 * 335.86736 * 26 17 16 28 28 C 1.52993 * 111.00601 * 278.93672 * 27 26 17 29 29 C 1.53003 * 111.00070 * 155.08661 * 27 26 17 30 30 H 1.08999 * 109.47170 * 269.96637 * 1 2 3 31 31 H 1.09001 * 109.46872 * 29.96165 * 1 2 3 32 32 H 1.09000 * 109.47041 * 149.96391 * 1 2 3 33 33 H 1.08990 * 115.55171 * 154.34978 * 5 4 3 34 34 H 1.09001 * 117.49943 * 0.02562 * 6 5 4 35 35 H 1.08995 * 117.49627 * 145.02232 * 6 5 4 36 36 H 1.08994 * 117.50048 * 252.51673 * 7 6 5 37 37 H 1.09000 * 117.49842 * 107.48741 * 7 6 5 38 38 H 1.09002 * 109.47152 * 149.68939 * 10 9 8 39 39 H 1.09001 * 109.46980 * 29.69039 * 10 9 8 40 40 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 41 41 H 1.08997 * 109.87916 * 23.25415 * 16 14 13 42 42 H 1.09003 * 109.88059 * 144.41241 * 16 14 13 43 43 H 0.96999 * 120.00757 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.36286 * 217.03660 * 26 17 16 45 45 H 1.08996 * 110.46384 * 94.75295 * 26 17 16 46 46 H 1.09000 * 109.47170 * 172.20003 * 28 27 26 47 47 H 1.08999 * 109.47387 * 292.20011 * 28 27 26 48 48 H 1.09004 * 109.47374 * 52.19796 * 28 27 26 49 49 H 1.09005 * 109.46739 * 307.80187 * 29 27 26 50 50 H 1.08996 * 109.47205 * 67.80316 * 29 27 26 51 51 H 1.09002 * 109.46734 * 187.80407 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6765 -0.0006 5 6 4.7777 1.5288 -0.0013 6 6 4.6015 3.0350 0.2024 7 6 4.9756 2.4882 -1.1767 8 7 3.5096 -0.6557 0.0045 9 6 2.2707 -1.0761 -0.0004 10 6 1.8246 -2.5156 -0.0001 11 6 1.6750 -2.9955 -1.4208 12 8 1.9081 -2.2428 -2.3428 13 7 1.2831 -4.2614 -1.6667 14 6 1.1383 -4.7280 -3.0478 15 1 1.8560 -4.2293 -3.6993 16 6 -0.3045 -4.5088 -3.5497 17 7 -1.0296 -5.7736 -3.3598 18 6 -2.3360 -6.0034 -3.7000 19 1 -2.7788 -6.9717 -3.5192 20 6 -3.0914 -4.9916 -4.2766 21 7 -2.5522 -3.8112 -4.4960 22 14 -4.8733 -5.3053 -4.7413 23 1 -5.2366 -6.7027 -4.3944 24 1 -5.7513 -4.3661 -3.9982 25 1 -5.0482 -5.0966 -6.2011 26 6 -0.1171 -6.7538 -2.7435 27 6 1.3034 -6.2687 -3.1269 28 6 1.6689 -6.7090 -4.5457 29 6 2.3421 -6.7615 -2.1173 30 1 -0.3633 -0.0006 1.0276 31 1 -0.3633 0.8903 -0.5132 32 1 -0.3633 -0.8897 -0.5144 33 1 5.6669 1.0638 0.4239 34 1 3.5867 3.4093 0.3374 35 1 5.3749 3.5610 0.7620 36 1 5.9951 2.6544 -1.5244 37 1 4.2069 2.5028 -1.9494 38 1 0.8673 -2.5992 0.5144 39 1 2.5676 -3.1260 0.5133 40 1 1.0971 -4.8634 -0.9293 41 1 -0.7818 -3.7174 -2.9718 42 1 -0.2930 -4.2432 -4.6068 43 1 -3.0798 -3.1042 -4.8993 44 1 -0.3001 -7.7492 -3.1483 45 1 -0.2371 -6.7575 -1.6602 46 1 2.6083 -6.2414 -4.8406 47 1 1.7786 -7.7932 -4.5729 48 1 0.8803 -6.4063 -5.2347 49 1 2.0239 -6.4953 -1.1093 50 1 2.4380 -7.8445 -2.1940 51 1 3.3044 -6.2956 -2.3295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977601343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:19 Heat of formation + Delta-G solvation = 105.574611 kcal Electronic energy + Delta-G solvation = -31389.664900 eV Core-core repulsion = 27327.688930 eV Total energy + Delta-G solvation = -4061.975970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.16916 -39.82521 -38.03773 -37.29313 -33.93699 -33.88221 -33.12184 -32.51104 -30.74374 -29.29251 -27.92879 -27.27540 -26.62954 -25.66774 -23.81152 -23.50327 -22.53447 -21.40962 -20.33112 -20.00362 -19.76386 -18.72353 -17.15668 -17.06092 -16.72083 -16.01436 -15.70412 -15.44984 -15.13385 -14.83450 -14.51237 -14.05631 -14.00253 -13.87511 -13.52137 -13.39294 -13.25119 -13.18861 -12.59123 -12.43798 -12.23111 -12.03566 -12.00121 -11.74074 -11.69928 -11.58842 -11.40799 -11.10360 -11.03086 -10.99202 -10.83748 -10.67551 -10.43109 -10.29149 -10.06079 -9.93993 -9.91182 -9.81289 -9.69119 -9.54026 -9.15738 -8.69204 -8.52272 -6.87888 -5.74377 -3.09122 1.55302 2.28550 2.71464 2.83801 3.35899 3.41591 3.42726 3.44360 3.76520 3.89148 4.31835 4.44015 4.45565 4.71904 4.84122 4.85708 4.91160 4.98008 5.05712 5.07707 5.18409 5.25014 5.27859 5.41678 5.47783 5.49119 5.50811 5.59713 5.66592 5.77730 5.90459 5.97095 5.98579 5.99677 6.13775 6.17358 6.21193 6.31394 6.35067 6.45290 6.54387 6.57257 6.63757 6.67409 6.77262 6.91126 7.50537 7.56940 7.74375 7.83850 8.14888 8.20185 8.48034 9.17132 9.77915 10.43033 11.36180 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.002800 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.940290 B = 9996.948806 C =11351.687351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.369 5.369 3 N -0.317 5.317 4 C 0.252 3.748 5 C -0.068 4.068 6 C -0.162 4.162 7 C -0.159 4.159 8 N -0.530 5.530 9 C 0.307 3.693 10 C -0.068 4.068 11 C 0.517 3.483 12 O -0.528 6.528 13 N -0.705 5.705 14 C 0.124 3.876 15 H 0.089 0.911 16 C 0.176 3.824 17 N -0.603 5.603 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.143 3.857 27 C -0.089 4.089 28 C -0.127 4.127 29 C -0.131 4.131 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.397 0.603 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.252 0.748 44 H 0.041 0.959 45 H 0.016 0.984 46 H 0.048 0.952 47 H 0.052 0.948 48 H 0.069 0.931 49 H 0.051 0.949 50 H 0.054 0.946 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.442 4.032 11.838 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.158 5.158 3 N -0.145 5.145 4 C -0.030 4.030 5 C -0.089 4.089 6 C -0.200 4.200 7 C -0.198 4.198 8 N -0.257 5.257 9 C 0.030 3.970 10 C -0.111 4.111 11 C 0.300 3.700 12 O -0.404 6.404 13 N -0.357 5.357 14 C 0.020 3.980 15 H 0.107 0.893 16 C 0.051 3.949 17 N -0.329 5.329 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.017 3.983 27 C -0.091 4.091 28 C -0.184 4.184 29 C -0.188 4.188 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.147 0.853 40 H 0.232 0.768 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.034 0.966 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.073 0.927 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.379 5.236 11.075 17.416 hybrid contribution -1.502 -0.628 0.052 1.629 sum 10.877 4.608 11.127 16.228 Atomic orbital electron populations 1.22014 0.73482 1.05787 1.03548 1.50050 1.07899 1.03648 1.54247 1.77892 1.01276 1.07694 1.27651 1.23002 0.92398 0.89256 0.98330 1.20014 0.93401 0.89716 1.05770 1.23023 1.03677 0.93744 0.99548 1.23033 1.03236 1.01671 0.91835 1.70192 1.19421 1.10799 1.25283 1.23258 0.86051 0.91414 0.96269 1.20214 1.04829 0.88295 0.97715 1.19920 0.77644 0.82579 0.89840 1.90775 1.49550 1.54382 1.45721 1.45909 1.68152 1.11998 1.09602 1.22513 1.00808 0.93248 0.81467 0.89259 1.21504 0.85082 0.88684 0.99652 1.44452 1.08520 1.08212 1.71734 1.19068 0.85181 0.97355 1.34017 0.90418 1.24803 0.98358 0.95955 1.01269 1.69969 1.35174 1.02698 1.48770 0.86080 0.84684 0.77270 0.77921 1.20552 1.21852 1.21781 1.21639 0.87659 0.93767 0.95231 1.22021 0.96299 0.94426 0.96343 1.21602 1.01208 1.00252 0.95356 1.21676 0.98298 1.00679 0.98196 0.90115 0.88728 0.88595 0.85278 0.87915 0.88007 0.87814 0.88455 0.86623 0.85281 0.76811 0.93534 0.92858 0.93789 0.94091 0.96638 0.93311 0.92851 0.91233 0.93014 0.92661 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 11.16 59.84 0.67 1.72 16 2 N -0.37 -5.47 4.04 -65.10 -0.26 -5.73 16 3 N -0.32 -5.05 12.24 32.42 0.40 -4.65 16 4 C 0.25 3.91 7.69 -156.85 -1.21 2.71 16 5 C -0.07 -0.80 6.33 -91.76 -0.58 -1.39 16 6 C -0.16 -1.54 10.13 -26.73 -0.27 -1.81 16 7 C -0.16 -1.63 10.23 -26.73 -0.27 -1.91 16 8 N -0.53 -8.72 11.19 -8.16 -0.09 -8.81 16 9 C 0.31 4.61 6.48 -155.69 -1.01 3.60 16 10 C -0.07 -0.79 5.82 -29.03 -0.17 -0.96 16 11 C 0.52 8.18 7.82 -10.98 -0.09 8.09 16 12 O -0.53 -10.97 15.68 5.56 0.09 -10.88 16 13 N -0.71 -10.57 4.45 -52.03 -0.23 -10.80 16 14 C 0.12 2.25 2.59 -66.10 -0.17 2.08 16 15 H 0.09 1.74 7.45 -51.93 -0.39 1.36 16 16 C 0.18 4.12 4.79 -3.06 -0.01 4.11 16 17 N -0.60 -14.32 3.38 -170.07 -0.57 -14.90 16 18 C -0.23 -6.06 10.28 -15.06 -0.15 -6.22 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -26.50 10.31 55.49 0.57 -25.92 16 22 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.14 2.67 6.12 -2.53 -0.02 2.65 16 27 C -0.09 -1.40 0.83 -152.36 -0.13 -1.53 16 28 C -0.13 -1.96 8.57 37.15 0.32 -1.65 16 29 C -0.13 -1.58 8.22 37.16 0.31 -1.27 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.09 7.72 -51.93 -0.40 0.69 16 33 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.10 1.09 7.88 -51.93 -0.41 0.68 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.12 0.99 7.76 -51.93 -0.40 0.59 16 39 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.40 4.86 7.11 -40.82 -0.29 4.57 16 41 H 0.05 1.24 7.41 -51.93 -0.38 0.85 16 42 H 0.05 1.44 7.38 -51.93 -0.38 1.06 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.04 0.76 8.05 -51.93 -0.42 0.35 16 45 H 0.02 0.28 7.98 -51.93 -0.41 -0.13 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.07 1.28 7.91 -51.93 -0.41 0.87 16 49 H 0.05 0.55 6.48 -51.93 -0.34 0.22 16 50 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 413.55 15.07 6.23 6.23 Total: -1.00 -35.59 413.55 -10.21 -45.80 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.43 Total: 5.10 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -2.88 Total: 7.94 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -0.19 Total: -70.81 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.59 -10.21 -45.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977601343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.374 kcal (2) G-P(sol) polarization free energy of solvation -35.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds