Wall clock time and date at job start Wed Apr 1 2020 05:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40449 * 126.82432 * 2 1 4 4 C 1.30712 * 106.79184 * 180.02562 * 3 2 1 5 5 C 1.50707 * 125.52637 * 179.97438 * 4 3 2 6 6 C 1.53005 * 117.49651 * 8.63977 * 5 4 3 7 7 C 1.53001 * 60.00179 * 252.51387 * 6 5 4 8 8 N 1.33242 * 108.95012 * 359.75485 * 4 3 2 9 9 C 1.30834 * 109.82395 * 0.40717 * 8 4 3 10 10 C 1.50703 * 125.95804 * 179.86463 * 9 8 4 11 11 C 1.50701 * 109.47064 * 269.68846 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.64676 * 31.86261 * 14 13 11 16 16 C 1.54324 * 110.72210 * 268.52280 * 14 13 11 17 17 N 1.47021 * 107.27185 * 263.83217 * 16 14 13 18 18 C 1.36937 * 125.64479 * 181.10276 * 17 16 14 19 19 H 1.07998 * 119.99732 * 179.97438 * 18 17 16 20 20 C 1.38808 * 120.00351 * 359.95024 * 18 17 16 21 21 N 1.31620 * 120.00245 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00247 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.46820 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47005 * 119.99818 * 22 20 18 25 25 H 1.48501 * 109.46761 * 240.00025 * 22 20 18 26 26 C 1.47422 * 108.70504 * 1.06157 * 17 16 14 27 27 C 1.54916 * 104.82909 * 335.86736 * 26 17 16 28 28 C 1.52993 * 111.00601 * 278.93672 * 27 26 17 29 29 C 1.53003 * 111.00070 * 155.08661 * 27 26 17 30 30 H 1.08999 * 109.47170 * 269.96637 * 1 2 3 31 31 H 1.09001 * 109.46872 * 29.96165 * 1 2 3 32 32 H 1.09000 * 109.47041 * 149.96391 * 1 2 3 33 33 H 1.08990 * 115.55171 * 154.34978 * 5 4 3 34 34 H 1.09001 * 117.49943 * 0.02562 * 6 5 4 35 35 H 1.08995 * 117.49627 * 145.02232 * 6 5 4 36 36 H 1.08994 * 117.50048 * 252.51673 * 7 6 5 37 37 H 1.09000 * 117.49842 * 107.48741 * 7 6 5 38 38 H 1.09002 * 109.47152 * 149.68939 * 10 9 8 39 39 H 1.09001 * 109.46980 * 29.69039 * 10 9 8 40 40 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 41 41 H 1.08997 * 109.87916 * 23.25415 * 16 14 13 42 42 H 1.09003 * 109.88059 * 144.41241 * 16 14 13 43 43 H 0.96999 * 120.00757 * 179.97438 * 21 20 18 44 44 H 1.09003 * 110.36286 * 217.03660 * 26 17 16 45 45 H 1.08996 * 110.46384 * 94.75295 * 26 17 16 46 46 H 1.09000 * 109.47170 * 172.20003 * 28 27 26 47 47 H 1.08999 * 109.47387 * 292.20011 * 28 27 26 48 48 H 1.09004 * 109.47374 * 52.19796 * 28 27 26 49 49 H 1.09005 * 109.46739 * 307.80187 * 29 27 26 50 50 H 1.08996 * 109.47205 * 67.80316 * 29 27 26 51 51 H 1.09002 * 109.46734 * 187.80407 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6765 -0.0006 5 6 4.7777 1.5288 -0.0013 6 6 4.6015 3.0350 0.2024 7 6 4.9756 2.4882 -1.1767 8 7 3.5096 -0.6557 0.0045 9 6 2.2707 -1.0761 -0.0004 10 6 1.8246 -2.5156 -0.0001 11 6 1.6750 -2.9955 -1.4208 12 8 1.9081 -2.2428 -2.3428 13 7 1.2831 -4.2614 -1.6667 14 6 1.1383 -4.7280 -3.0478 15 1 1.8560 -4.2293 -3.6993 16 6 -0.3045 -4.5088 -3.5497 17 7 -1.0296 -5.7736 -3.3598 18 6 -2.3360 -6.0034 -3.7000 19 1 -2.7788 -6.9717 -3.5192 20 6 -3.0914 -4.9916 -4.2766 21 7 -2.5522 -3.8112 -4.4960 22 14 -4.8733 -5.3053 -4.7413 23 1 -5.2366 -6.7027 -4.3944 24 1 -5.7513 -4.3661 -3.9982 25 1 -5.0482 -5.0966 -6.2011 26 6 -0.1171 -6.7538 -2.7435 27 6 1.3034 -6.2687 -3.1269 28 6 1.6689 -6.7090 -4.5457 29 6 2.3421 -6.7615 -2.1173 30 1 -0.3633 -0.0006 1.0276 31 1 -0.3633 0.8903 -0.5132 32 1 -0.3633 -0.8897 -0.5144 33 1 5.6669 1.0638 0.4239 34 1 3.5867 3.4093 0.3374 35 1 5.3749 3.5610 0.7620 36 1 5.9951 2.6544 -1.5244 37 1 4.2069 2.5028 -1.9494 38 1 0.8673 -2.5992 0.5144 39 1 2.5676 -3.1260 0.5133 40 1 1.0971 -4.8634 -0.9293 41 1 -0.7818 -3.7174 -2.9718 42 1 -0.2930 -4.2432 -4.6068 43 1 -3.0798 -3.1042 -4.8993 44 1 -0.3001 -7.7492 -3.1483 45 1 -0.2371 -6.7575 -1.6602 46 1 2.6083 -6.2414 -4.8406 47 1 1.7786 -7.7932 -4.5729 48 1 0.8803 -6.4063 -5.2347 49 1 2.0239 -6.4953 -1.1093 50 1 2.4380 -7.8445 -2.1940 51 1 3.3044 -6.2956 -2.3295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977601343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:18 Heat of formation + Delta-G solvation = 82.141008 kcal Electronic energy + Delta-G solvation = -31390.681057 eV Core-core repulsion = 27327.688930 eV Total energy + Delta-G solvation = -4062.992127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.26419 -41.23025 -39.48226 -38.16504 -35.68921 -34.92183 -34.55264 -33.62111 -32.58506 -30.56016 -29.34326 -28.30894 -27.89523 -27.33799 -25.16155 -24.75377 -23.32582 -22.80051 -21.84719 -21.27525 -20.87059 -20.07061 -18.67697 -18.35808 -18.07130 -17.37805 -16.88489 -16.66869 -16.38372 -16.13467 -15.80329 -15.63996 -15.38498 -15.14003 -14.80809 -14.61470 -14.35859 -14.16946 -14.00564 -13.78014 -13.43668 -13.31159 -13.13924 -13.12038 -12.93740 -12.84614 -12.73208 -12.66038 -12.55089 -12.42258 -12.06558 -11.88727 -11.84562 -11.72676 -11.51661 -11.48669 -11.29390 -11.13780 -11.07205 -10.77632 -10.69464 -10.20259 -10.00051 -8.86959 -7.82695 -5.18462 0.44336 1.28727 1.44607 1.45808 1.55665 1.57817 1.62439 2.24727 2.49646 2.78038 2.99876 3.33620 3.36121 3.46731 3.52343 3.72982 3.85843 3.87685 3.98269 4.04550 4.06315 4.10310 4.19059 4.26303 4.35331 4.42728 4.52854 4.53953 4.58231 4.71959 4.73491 4.86665 4.89070 4.92548 4.99125 5.07596 5.10653 5.16107 5.19598 5.22574 5.25610 5.32197 5.37936 5.38910 5.48467 5.58779 5.71960 5.74835 5.75975 6.18790 6.55831 7.02822 7.09748 7.25765 7.79749 8.43537 9.26329 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.002800 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.940290 B = 9996.948806 C =11351.687351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.377 5.377 3 N -0.342 5.342 4 C 0.238 3.762 5 C -0.089 4.089 6 C -0.143 4.143 7 C -0.158 4.158 8 N -0.555 5.555 9 C 0.296 3.704 10 C -0.057 4.057 11 C 0.517 3.483 12 O -0.585 6.585 13 N -0.691 5.691 14 C 0.139 3.861 15 H 0.071 0.929 16 C 0.195 3.805 17 N -0.620 5.620 18 C -0.230 4.230 19 H 0.087 0.913 20 C -0.069 4.069 21 N -0.952 5.952 22 Si 0.973 3.027 23 H -0.262 1.262 24 H -0.295 1.295 25 H -0.299 1.299 26 C 0.138 3.862 27 C -0.075 4.075 28 C -0.126 4.126 29 C -0.124 4.124 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.072 0.928 38 H 0.153 0.847 39 H 0.166 0.834 40 H 0.415 0.585 41 H 0.006 0.994 42 H 0.000 1.000 43 H 0.241 0.759 44 H 0.046 0.954 45 H 0.040 0.960 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.028 0.972 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.734 2.079 14.503 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.167 5.167 3 N -0.171 5.171 4 C -0.043 4.043 5 C -0.110 4.110 6 C -0.180 4.180 7 C -0.197 4.197 8 N -0.283 5.283 9 C 0.019 3.981 10 C -0.098 4.098 11 C 0.303 3.697 12 O -0.464 6.464 13 N -0.343 5.343 14 C 0.033 3.967 15 H 0.089 0.911 16 C 0.068 3.932 17 N -0.346 5.346 18 C -0.359 4.359 19 H 0.105 0.895 20 C -0.262 4.262 21 N -0.602 5.602 22 Si 0.802 3.198 23 H -0.186 1.186 24 H -0.222 1.222 25 H -0.227 1.227 26 C 0.013 3.987 27 C -0.076 4.076 28 C -0.183 4.183 29 C -0.181 4.181 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.163 0.837 34 H 0.106 0.894 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.091 0.909 38 H 0.170 0.830 39 H 0.183 0.817 40 H 0.254 0.746 41 H 0.024 0.976 42 H 0.018 0.982 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.047 0.953 49 H 0.090 0.910 50 H 0.095 0.905 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.667 3.214 13.798 19.685 hybrid contribution -1.918 -0.046 -0.822 2.087 sum 11.749 3.168 12.976 17.789 Atomic orbital electron populations 1.22233 0.71971 1.05422 1.05622 1.50297 1.08888 1.03521 1.53946 1.77822 1.01796 1.08756 1.28708 1.23722 0.93383 0.89575 0.97635 1.20289 0.92710 0.90585 1.07390 1.23083 1.03874 0.92126 0.98947 1.23076 1.03940 1.01221 0.91445 1.70188 1.20427 1.11393 1.26295 1.23822 0.85982 0.92619 0.95715 1.20352 1.07855 0.86760 0.94881 1.20631 0.76061 0.81942 0.91111 1.90764 1.51918 1.55780 1.47962 1.45674 1.67603 1.12307 1.08741 1.22033 0.96443 0.95371 0.82876 0.91074 1.21064 0.88192 0.87846 0.96090 1.44683 1.08528 1.09500 1.71852 1.19488 0.86515 0.97367 1.32532 0.89513 1.25609 1.02287 0.95975 1.02297 1.70228 1.36215 1.03498 1.50256 0.85078 0.80153 0.77816 0.76727 1.18568 1.22211 1.22701 1.21916 0.88025 0.92714 0.96007 1.21991 0.96096 0.91802 0.97744 1.21604 1.00337 1.01946 0.94433 1.21656 0.96908 1.01986 0.97589 0.86735 0.89033 0.89061 0.83733 0.89376 0.84817 0.85169 0.90939 0.82970 0.81660 0.74625 0.97592 0.98219 0.94923 0.93581 0.94242 0.92015 0.90322 0.95293 0.91022 0.90524 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.96 11.16 127.77 1.43 3.39 16 2 N -0.38 -11.19 4.04 -359.88 -1.45 -12.64 16 3 N -0.34 -11.11 12.24 -51.33 -0.63 -11.74 16 4 C 0.24 7.48 7.69 138.63 1.07 8.54 16 5 C -0.09 -2.05 6.33 -11.53 -0.07 -2.13 16 6 C -0.14 -2.54 10.13 30.60 0.31 -2.23 16 7 C -0.16 -3.17 10.23 30.60 0.31 -2.86 16 8 N -0.55 -18.14 11.19 -179.72 -2.01 -20.15 16 9 C 0.30 8.68 6.48 138.23 0.90 9.57 16 10 C -0.06 -1.20 5.82 29.10 0.17 -1.03 16 11 C 0.52 16.01 7.82 87.66 0.69 16.69 16 12 O -0.58 -25.09 15.68 -3.03 -0.05 -25.13 16 13 N -0.69 -19.71 4.45 -436.91 -1.95 -21.65 16 14 C 0.14 5.05 2.59 46.18 0.12 5.17 16 15 H 0.07 2.88 7.45 -2.39 -0.02 2.87 16 16 C 0.19 9.57 4.79 86.73 0.42 9.98 16 17 N -0.62 -29.79 3.38 -691.99 -2.34 -32.12 16 18 C -0.23 -12.34 10.28 84.03 0.86 -11.47 16 19 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 21 N -0.95 -57.97 10.31 21.65 0.22 -57.74 16 22 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 26 C 0.14 4.86 6.12 86.86 0.53 5.39 16 27 C -0.07 -2.20 0.83 -50.79 -0.04 -2.25 16 28 C -0.13 -3.76 8.57 71.98 0.62 -3.14 16 29 C -0.12 -2.43 8.22 71.98 0.59 -1.84 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.10 7.72 -2.39 -0.02 2.08 16 33 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.09 1.85 7.88 -2.39 -0.02 1.83 16 35 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.15 2.09 7.76 -2.39 -0.02 2.07 16 39 H 0.17 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.42 8.74 7.11 -92.71 -0.66 8.09 16 41 H 0.01 0.33 7.41 -2.39 -0.02 0.32 16 42 H 0.00 -0.02 7.38 -2.39 -0.02 -0.04 16 43 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.05 1.60 8.05 -2.39 -0.02 1.58 16 45 H 0.04 1.25 7.98 -2.39 -0.02 1.23 16 46 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 48 H 0.03 1.08 7.91 -2.39 -0.02 1.06 16 49 H 0.07 1.14 6.48 -2.38 -0.02 1.13 16 50 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -84.81 413.55 2.45 -82.36 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.27 Total: 22.97 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: 8.35 Total: 28.37 kcal Atomic # 7 Polarization: -147.90 SS G_CDS: -8.15 Total: -156.05 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -84.81 2.45 -82.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977601343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.503 kcal (2) G-P(sol) polarization free energy of solvation -84.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds