Wall clock time and date at job start Wed Apr 1 2020 05:48:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30840 * 126.46641 * 2 1
4 4 N 1.28903 * 109.73820 * 179.97438 * 3 2 1
5 5 C 1.29835 * 109.48380 * 359.97438 * 4 3 2
6 6 N 1.34701 * 126.46440 * 180.02562 * 2 1 3
7 7 C 1.46255 * 128.84675 * 0.14949 * 6 2 1
8 8 C 1.53316 * 108.72650 * 162.91681 * 7 6 2
9 9 H 1.09004 * 109.45128 * 290.28286 * 8 7 6
10 10 C 1.50698 * 109.45286 * 170.33500 * 8 7 6
11 11 O 1.21285 * 120.00318 * 359.97438 * 10 8 7
12 12 N 1.34781 * 120.00027 * 180.02562 * 10 8 7
13 13 C 1.46501 * 119.99953 * 179.97438 * 12 10 8
14 14 H 1.08996 * 110.88993 * 322.57196 * 13 12 10
15 15 C 1.54910 * 111.00421 * 86.45417 * 13 12 10
16 16 N 1.47426 * 104.83486 * 81.06164 * 15 13 12
17 17 C 1.36932 * 125.65183 * 204.09420 * 16 15 13
18 18 H 1.07994 * 120.00676 * 169.95248 * 17 16 15
19 19 C 1.38814 * 119.99899 * 349.94892 * 17 16 15
20 20 N 1.31619 * 120.00098 * 350.42800 * 19 17 16
21 21 Si 1.86796 * 120.00250 * 170.42712 * 19 17 16
22 22 H 1.48495 * 109.47358 * 94.14072 * 21 19 17
23 23 H 1.48506 * 109.47418 * 214.14276 * 21 19 17
24 24 H 1.48506 * 109.46851 * 334.14009 * 21 19 17
25 25 C 1.47022 * 108.69867 * 24.35604 * 16 15 13
26 26 C 1.54333 * 107.27034 * 358.58652 * 25 16 15
27 27 C 1.53002 * 110.85060 * 219.67129 * 26 25 16
28 28 C 1.53004 * 110.66692 * 96.51945 * 26 25 16
29 29 C 1.53135 * 109.57997 * 50.29581 * 8 7 6
30 30 C 1.50807 * 128.52508 * 180.16221 * 5 4 3
31 31 H 1.08991 * 109.47244 * 269.99816 * 1 2 3
32 32 H 1.09005 * 109.46968 * 30.00005 * 1 2 3
33 33 H 1.09007 * 109.47139 * 149.99306 * 1 2 3
34 34 H 1.09003 * 109.59759 * 43.14061 * 7 6 2
35 35 H 1.09003 * 109.71925 * 282.76438 * 7 6 2
36 36 H 0.97000 * 120.00120 * 359.97438 * 12 10 8
37 37 H 1.09005 * 110.36687 * 322.22467 * 15 13 12
38 38 H 1.09004 * 110.45926 * 199.94842 * 15 13 12
39 39 H 0.96994 * 120.00527 * 179.97438 * 20 19 17
40 40 H 1.09005 * 109.87914 * 118.13598 * 25 16 15
41 41 H 1.09007 * 109.88256 * 239.29122 * 25 16 15
42 42 H 1.09000 * 109.46858 * 173.69012 * 27 26 25
43 43 H 1.08999 * 109.47418 * 293.69209 * 27 26 25
44 44 H 1.09002 * 109.46922 * 53.69445 * 27 26 25
45 45 H 1.08996 * 109.46902 * 306.41335 * 28 26 25
46 46 H 1.09000 * 109.46785 * 66.41935 * 28 26 25
47 47 H 1.08997 * 109.46663 * 186.41150 * 28 26 25
48 48 H 1.09003 * 109.49790 * 50.51391 * 29 8 7
49 49 H 1.09004 * 109.50133 * 170.61107 * 29 8 7
50 50 H 1.09000 * 109.72758 * 283.73672 * 30 5 4
51 51 H 1.09003 * 109.72961 * 44.36823 * 30 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2847 1.0522 0.0000
4 7 3.5191 0.6812 0.0005
5 6 3.5816 -0.6157 0.0015
6 7 2.3076 -1.0833 -0.0005
7 6 1.9367 -2.4980 -0.0041
8 6 3.1554 -3.3253 -0.4297
9 1 3.3633 -3.1487 -1.4851
10 6 2.8691 -4.7888 -0.2127
11 8 1.7982 -5.1370 0.2377
12 7 3.8035 -5.7108 -0.5182
13 6 3.5254 -7.1335 -0.3067
14 1 2.9435 -7.2849 0.6024
15 6 2.8072 -7.7474 -1.5343
16 7 3.8846 -8.0281 -2.5007
17 6 3.7329 -8.1302 -3.8578
18 1 4.6025 -8.1770 -4.4964
19 6 2.4612 -8.1737 -4.4127
20 7 1.4079 -8.3069 -3.6347
21 14 2.2448 -8.0433 -6.2634
22 1 2.1823 -9.4053 -6.8518
23 1 0.9856 -7.3158 -6.5646
24 1 3.3943 -7.3049 -6.8454
25 6 5.1478 -8.1864 -1.7654
26 6 4.8396 -7.9577 -0.2705
27 6 5.9600 -7.1608 0.4008
28 6 4.6223 -9.2918 0.4463
29 6 4.3716 -2.9141 0.4050
30 6 4.8052 -1.4972 0.0057
31 1 -0.3633 0.0000 1.0276
32 1 -0.3633 0.8900 -0.5139
33 1 -0.3634 -0.8900 -0.5140
34 1 1.1207 -2.6603 -0.7083
35 1 1.6221 -2.7983 0.9954
36 1 4.6602 -5.4323 -0.8781
37 1 2.0973 -7.0346 -1.9541
38 1 2.2976 -8.6698 -1.2557
39 1 0.5193 -8.3369 -4.0224
40 1 5.5404 -9.1922 -1.9153
41 1 5.8723 -7.4484 -2.1098
42 1 5.6697 -6.9159 1.4225
43 1 6.8720 -7.7576 0.4153
44 1 6.1364 -6.2412 -0.1572
45 1 3.8604 -9.8669 -0.0796
46 1 5.5565 -9.8532 0.4601
47 1 4.2953 -9.1055 1.4693
48 1 4.1091 -2.9302 1.4628
49 1 5.1904 -3.6101 0.2223
50 1 5.2491 -1.5151 -0.9896
51 1 5.5303 -1.1167 0.7252
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000977630852.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:48:31
Heat of formation + Delta-G solvation = 57.658749 kcal
Electronic energy + Delta-G solvation = -32128.906127 eV
Core-core repulsion = 28064.852369 eV
Total energy + Delta-G solvation = -4064.053758 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.40 seconds
Orbital eigenvalues (eV)
-43.44329 -40.22576 -38.48512 -36.73621 -34.40985 -33.91897 -33.20653 -31.71286
-30.83108 -30.63121 -28.27292 -27.50974 -26.99374 -25.73472 -25.11558 -23.62160
-23.13191 -21.56811 -20.87976 -20.08028 -19.64972 -18.77064 -17.54365 -16.77650
-16.76287 -16.31578 -15.98310 -15.45707 -15.00334 -14.67033 -14.37604 -14.33917
-14.04755 -13.97664 -13.85609 -13.67547 -13.32371 -13.24078 -12.85047 -12.83080
-12.46281 -12.35687 -12.21731 -12.04292 -11.87791 -11.69451 -11.50164 -11.44757
-11.36048 -11.33145 -10.97887 -10.85509 -10.52170 -10.44137 -10.32200 -10.23006
-10.11108 -10.00052 -9.80871 -9.64518 -9.08955 -8.67660 -8.60967 -6.87260
-5.81525 -3.15108 1.67940 2.25092 2.72331 2.74109 3.28595 3.33352
3.39515 3.41166 3.86392 4.08750 4.24309 4.30344 4.37203 4.41955
4.73734 4.80116 4.82113 4.92322 5.00167 5.09482 5.11754 5.15969
5.21205 5.30388 5.34148 5.41709 5.45686 5.50603 5.51632 5.64801
5.65415 5.68711 5.76373 5.86026 5.89576 5.99743 6.05443 6.06834
6.11667 6.27351 6.41417 6.47325 6.55698 6.61890 6.71501 6.84371
7.40136 7.46135 7.68725 7.75706 8.18293 8.38294 8.62888 9.10980
9.73512 10.39896 11.30605
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.010600 B = 0.003344 C = 0.002852
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2640.808188 B = 8372.027072 C = 9816.139355
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 C 0.179 3.821
3 N -0.303 5.303
4 N -0.293 5.293
5 C 0.172 3.828
6 N -0.467 5.467
7 C 0.124 3.876
8 C -0.124 4.124
9 H 0.111 0.889
10 C 0.525 3.475
11 O -0.540 6.540
12 N -0.696 5.696
13 C 0.123 3.877
14 H 0.088 0.912
15 C 0.169 3.831
16 N -0.599 5.599
17 C -0.233 4.233
18 H 0.075 0.925
19 C -0.003 4.003
20 N -0.914 5.914
21 Si 0.907 3.093
22 H -0.288 1.288
23 H -0.290 1.290
24 H -0.281 1.281
25 C 0.142 3.858
26 C -0.085 4.085
27 C -0.131 4.131
28 C -0.130 4.130
29 C -0.116 4.116
30 C -0.031 4.031
31 H 0.086 0.914
32 H 0.094 0.906
33 H 0.080 0.920
34 H 0.104 0.896
35 H 0.103 0.897
36 H 0.398 0.602
37 H 0.074 0.926
38 H 0.035 0.965
39 H 0.253 0.747
40 H 0.025 0.975
41 H 0.022 0.978
42 H 0.054 0.946
43 H 0.056 0.944
44 H 0.051 0.949
45 H 0.065 0.935
46 H 0.055 0.945
47 H 0.050 0.950
48 H 0.079 0.921
49 H 0.092 0.908
50 H 0.099 0.901
51 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.476 8.767 11.137 15.195
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.088 4.088
3 N -0.144 5.144
4 N -0.132 5.132
5 C -0.095 4.095
6 N -0.158 5.158
7 C 0.001 3.999
8 C -0.146 4.146
9 H 0.129 0.871
10 C 0.309 3.691
11 O -0.417 6.417
12 N -0.346 5.346
13 C 0.018 3.982
14 H 0.106 0.894
15 C 0.043 3.957
16 N -0.326 5.326
17 C -0.361 4.361
18 H 0.093 0.907
19 C -0.201 4.201
20 N -0.560 5.560
21 Si 0.738 3.262
22 H -0.216 1.216
23 H -0.217 1.217
24 H -0.206 1.206
25 C 0.016 3.984
26 C -0.086 4.086
27 C -0.189 4.189
28 C -0.187 4.187
29 C -0.155 4.155
30 C -0.071 4.071
31 H 0.105 0.895
32 H 0.113 0.887
33 H 0.098 0.902
34 H 0.122 0.878
35 H 0.121 0.879
36 H 0.233 0.767
37 H 0.092 0.908
38 H 0.053 0.947
39 H 0.064 0.936
40 H 0.043 0.957
41 H 0.039 0.961
42 H 0.073 0.927
43 H 0.075 0.925
44 H 0.070 0.930
45 H 0.084 0.916
46 H 0.074 0.926
47 H 0.069 0.931
48 H 0.098 0.902
49 H 0.110 0.890
50 H 0.117 0.883
51 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 4.939 9.923 11.295 15.825
hybrid contribution -0.234 -1.311 -1.377 1.915
sum 4.705 8.612 9.918 13.952
Atomic orbital electron populations
1.20235 0.83693 1.04688 1.04101 1.24669 0.97132 0.82733 1.04241
1.74466 0.96117 1.23716 1.20072 1.74015 1.12368 1.08072 1.18788
1.24688 0.87131 0.92560 1.05166 1.46021 1.06961 1.08624 1.54190
1.21777 0.97899 0.74938 1.05251 1.21623 0.95948 0.93580 1.03455
0.87061 1.19796 0.84470 0.86576 0.78268 1.90731 1.23769 1.81815
1.45382 1.45794 1.17756 1.06736 1.64310 1.22587 0.96253 0.78473
1.00932 0.89439 1.21757 0.90367 0.97908 0.85630 1.44444 1.02384
1.83253 1.02493 1.18965 0.92297 1.44344 0.80503 0.90708 1.24808
0.95683 1.01777 0.97797 1.69939 0.97679 1.55202 1.33217 0.86189
0.77241 0.77676 0.85134 1.21555 1.21659 1.20645 1.21427 0.90476
0.97933 0.88578 1.21824 0.94529 0.95607 0.96666 1.21731 0.97880
0.99417 0.99888 1.21704 1.01987 0.95703 0.99339 1.21732 0.96993
0.96313 1.00455 1.20230 0.91187 0.90995 1.04662 0.89545 0.88702
0.90157 0.87757 0.87870 0.76705 0.90791 0.94686 0.93636 0.95725
0.96054 0.92739 0.92527 0.93017 0.91600 0.92598 0.93057 0.90237
0.88953 0.88304 0.87765
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.57 10.29 36.01 0.37 -0.20 16
2 C 0.18 2.24 8.07 -155.44 -1.25 0.99 16
3 N -0.30 -4.66 12.23 32.70 0.40 -4.26 16
4 N -0.29 -4.49 12.21 32.76 0.40 -4.09 16
5 C 0.17 2.12 7.75 -155.30 -1.20 0.92 16
6 N -0.47 -5.52 3.11 -110.86 -0.35 -5.86 16
7 C 0.12 1.33 5.48 -4.01 -0.02 1.31 16
8 C -0.12 -1.30 2.54 -91.54 -0.23 -1.53 16
9 H 0.11 1.17 8.12 -51.93 -0.42 0.74 16
10 C 0.52 7.45 7.15 -10.98 -0.08 7.37 16
11 O -0.54 -9.63 15.57 5.55 0.09 -9.54 16
12 N -0.70 -9.85 4.52 -51.73 -0.23 -10.08 16
13 C 0.12 2.05 2.56 -65.78 -0.17 1.89 16
14 H 0.09 1.50 7.63 -51.93 -0.40 1.11 16
15 C 0.17 3.83 4.81 -2.53 -0.01 3.81 16
16 N -0.60 -13.99 3.39 -170.06 -0.58 -14.57 16
17 C -0.23 -6.15 10.24 -15.06 -0.15 -6.30 16
18 H 0.08 1.93 7.85 -52.49 -0.41 1.51 16
19 C 0.00 -0.09 5.40 -17.43 -0.09 -0.19 16
20 N -0.91 -26.13 10.68 55.49 0.59 -25.54 16
21 Si 0.91 21.49 29.56 -169.99 -5.03 16.46 16
22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
25 C 0.14 2.60 6.42 -3.06 -0.02 2.58 16
26 C -0.09 -1.24 0.80 -152.66 -0.12 -1.36 16
27 C -0.13 -1.43 8.07 37.16 0.30 -1.13 16
28 C -0.13 -1.78 8.39 37.16 0.31 -1.47 16
29 C -0.12 -0.91 5.22 -26.42 -0.14 -1.05 16
30 C -0.03 -0.26 6.34 -27.59 -0.17 -0.43 16
31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16
32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16
33 H 0.08 0.58 7.76 -51.93 -0.40 0.18 16
34 H 0.10 1.12 7.85 -51.93 -0.41 0.71 16
35 H 0.10 1.10 7.79 -51.93 -0.40 0.70 16
36 H 0.40 4.83 6.21 -40.82 -0.25 4.58 16
37 H 0.07 1.96 6.94 -51.93 -0.36 1.60 16
38 H 0.04 0.89 7.74 -51.93 -0.40 0.48 16
39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
40 H 0.02 0.47 7.84 -51.93 -0.41 0.07 16
41 H 0.02 0.38 7.77 -51.92 -0.40 -0.03 16
42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
44 H 0.05 0.51 6.36 -51.93 -0.33 0.18 16
45 H 0.06 1.06 7.59 -51.93 -0.39 0.67 16
46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
48 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16
49 H 0.09 0.57 7.32 -51.93 -0.38 0.19 16
50 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16
51 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16
LS Contribution 398.45 15.07 6.00 6.00
Total: -1.00 -34.24 398.45 -9.70 -43.94
By element:
Atomic # 1 Polarization: 10.63 SS G_CDS: -8.31 Total: 2.32 kcal
Atomic # 6 Polarization: 7.90 SS G_CDS: -2.69 Total: 5.21 kcal
Atomic # 7 Polarization: -64.63 SS G_CDS: 0.24 Total: -64.39 kcal
Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -34.24 -9.70 -43.94 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000977630852.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.599 kcal
(2) G-P(sol) polarization free energy of solvation -34.237 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.362 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.659 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.40 seconds