Wall clock time and date at job start Wed Apr 1 2020 05:48:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30840 * 126.46641 * 2 1
4 4 N 1.28903 * 109.73820 * 179.97438 * 3 2 1
5 5 C 1.29835 * 109.48380 * 359.97438 * 4 3 2
6 6 N 1.34701 * 126.46440 * 180.02562 * 2 1 3
7 7 C 1.46255 * 128.84675 * 0.14949 * 6 2 1
8 8 C 1.53316 * 108.72650 * 162.91681 * 7 6 2
9 9 H 1.09004 * 109.45128 * 290.28286 * 8 7 6
10 10 C 1.50698 * 109.45286 * 170.33500 * 8 7 6
11 11 O 1.21285 * 120.00318 * 359.97438 * 10 8 7
12 12 N 1.34781 * 120.00027 * 180.02562 * 10 8 7
13 13 C 1.46501 * 119.99953 * 179.97438 * 12 10 8
14 14 H 1.08996 * 110.88993 * 322.57196 * 13 12 10
15 15 C 1.54910 * 111.00421 * 86.45417 * 13 12 10
16 16 N 1.47426 * 104.83486 * 81.06164 * 15 13 12
17 17 C 1.36932 * 125.65183 * 204.09420 * 16 15 13
18 18 H 1.07994 * 120.00676 * 169.95248 * 17 16 15
19 19 C 1.38814 * 119.99899 * 349.94892 * 17 16 15
20 20 N 1.31619 * 120.00098 * 350.42800 * 19 17 16
21 21 Si 1.86796 * 120.00250 * 170.42712 * 19 17 16
22 22 H 1.48495 * 109.47358 * 94.14072 * 21 19 17
23 23 H 1.48506 * 109.47418 * 214.14276 * 21 19 17
24 24 H 1.48506 * 109.46851 * 334.14009 * 21 19 17
25 25 C 1.47022 * 108.69867 * 24.35604 * 16 15 13
26 26 C 1.54333 * 107.27034 * 358.58652 * 25 16 15
27 27 C 1.53002 * 110.85060 * 219.67129 * 26 25 16
28 28 C 1.53004 * 110.66692 * 96.51945 * 26 25 16
29 29 C 1.53135 * 109.57997 * 50.29581 * 8 7 6
30 30 C 1.50807 * 128.52508 * 180.16221 * 5 4 3
31 31 H 1.08991 * 109.47244 * 269.99816 * 1 2 3
32 32 H 1.09005 * 109.46968 * 30.00005 * 1 2 3
33 33 H 1.09007 * 109.47139 * 149.99306 * 1 2 3
34 34 H 1.09003 * 109.59759 * 43.14061 * 7 6 2
35 35 H 1.09003 * 109.71925 * 282.76438 * 7 6 2
36 36 H 0.97000 * 120.00120 * 359.97438 * 12 10 8
37 37 H 1.09005 * 110.36687 * 322.22467 * 15 13 12
38 38 H 1.09004 * 110.45926 * 199.94842 * 15 13 12
39 39 H 0.96994 * 120.00527 * 179.97438 * 20 19 17
40 40 H 1.09005 * 109.87914 * 118.13598 * 25 16 15
41 41 H 1.09007 * 109.88256 * 239.29122 * 25 16 15
42 42 H 1.09000 * 109.46858 * 173.69012 * 27 26 25
43 43 H 1.08999 * 109.47418 * 293.69209 * 27 26 25
44 44 H 1.09002 * 109.46922 * 53.69445 * 27 26 25
45 45 H 1.08996 * 109.46902 * 306.41335 * 28 26 25
46 46 H 1.09000 * 109.46785 * 66.41935 * 28 26 25
47 47 H 1.08997 * 109.46663 * 186.41150 * 28 26 25
48 48 H 1.09003 * 109.49790 * 50.51391 * 29 8 7
49 49 H 1.09004 * 109.50133 * 170.61107 * 29 8 7
50 50 H 1.09000 * 109.72758 * 283.73672 * 30 5 4
51 51 H 1.09003 * 109.72961 * 44.36823 * 30 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2847 1.0522 0.0000
4 7 3.5191 0.6812 0.0005
5 6 3.5816 -0.6157 0.0015
6 7 2.3076 -1.0833 -0.0005
7 6 1.9367 -2.4980 -0.0041
8 6 3.1554 -3.3253 -0.4297
9 1 3.3633 -3.1487 -1.4851
10 6 2.8691 -4.7888 -0.2127
11 8 1.7982 -5.1370 0.2377
12 7 3.8035 -5.7108 -0.5182
13 6 3.5254 -7.1335 -0.3067
14 1 2.9435 -7.2849 0.6024
15 6 2.8072 -7.7474 -1.5343
16 7 3.8846 -8.0281 -2.5007
17 6 3.7329 -8.1302 -3.8578
18 1 4.6025 -8.1770 -4.4964
19 6 2.4612 -8.1737 -4.4127
20 7 1.4079 -8.3069 -3.6347
21 14 2.2448 -8.0433 -6.2634
22 1 2.1823 -9.4053 -6.8518
23 1 0.9856 -7.3158 -6.5646
24 1 3.3943 -7.3049 -6.8454
25 6 5.1478 -8.1864 -1.7654
26 6 4.8396 -7.9577 -0.2705
27 6 5.9600 -7.1608 0.4008
28 6 4.6223 -9.2918 0.4463
29 6 4.3716 -2.9141 0.4050
30 6 4.8052 -1.4972 0.0057
31 1 -0.3633 0.0000 1.0276
32 1 -0.3633 0.8900 -0.5139
33 1 -0.3634 -0.8900 -0.5140
34 1 1.1207 -2.6603 -0.7083
35 1 1.6221 -2.7983 0.9954
36 1 4.6602 -5.4323 -0.8781
37 1 2.0973 -7.0346 -1.9541
38 1 2.2976 -8.6698 -1.2557
39 1 0.5193 -8.3369 -4.0224
40 1 5.5404 -9.1922 -1.9153
41 1 5.8723 -7.4484 -2.1098
42 1 5.6697 -6.9159 1.4225
43 1 6.8720 -7.7576 0.4153
44 1 6.1364 -6.2412 -0.1572
45 1 3.8604 -9.8669 -0.0796
46 1 5.5565 -9.8532 0.4601
47 1 4.2953 -9.1055 1.4693
48 1 4.1091 -2.9302 1.4628
49 1 5.1904 -3.6101 0.2223
50 1 5.2491 -1.5151 -0.9896
51 1 5.5303 -1.1167 0.7252
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000977630852.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:48:30
Heat of formation + Delta-G solvation = 36.216464 kcal
Electronic energy + Delta-G solvation = -32129.835934 eV
Core-core repulsion = 28064.852369 eV
Total energy + Delta-G solvation = -4064.983565 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.31 seconds
Orbital eigenvalues (eV)
-44.38258 -41.44339 -39.77631 -37.73676 -35.69984 -35.20745 -34.46153 -32.65917
-32.58468 -31.44501 -29.76711 -28.35432 -28.04581 -27.42810 -26.16316 -24.84906
-24.20429 -22.60380 -22.22919 -21.41591 -20.63662 -19.97868 -18.67732 -18.52778
-17.72836 -17.46466 -17.12163 -16.71147 -16.33333 -15.78088 -15.64898 -15.54610
-15.18664 -15.03928 -14.94258 -14.71083 -14.60007 -14.09779 -13.96521 -13.70452
-13.59094 -13.49862 -13.22833 -13.21286 -13.14226 -12.96619 -12.81131 -12.66127
-12.60408 -12.54532 -12.24545 -12.10554 -12.05613 -11.80912 -11.72886 -11.51172
-11.40263 -11.31650 -11.16908 -10.87278 -10.67505 -10.03193 -9.97489 -8.81531
-7.87233 -5.21364 0.78170 1.34047 1.43673 1.44263 1.53341 1.60103
1.75360 2.19567 2.48006 3.05595 3.25424 3.32213 3.39823 3.53266
3.56090 3.58944 3.70838 3.91827 3.97778 3.99788 4.10385 4.15045
4.24990 4.31568 4.43997 4.52204 4.55545 4.60860 4.64489 4.77740
4.82246 4.84351 4.87923 4.92442 4.95181 4.97414 5.00998 5.04212
5.08400 5.14868 5.21793 5.22672 5.33338 5.39655 5.49024 5.58135
5.71289 5.72667 5.85169 6.20670 6.57964 7.08005 7.25681 7.65327
7.78453 8.43909 9.23300
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.010600 B = 0.003344 C = 0.002852
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2640.808188 B = 8372.027072 C = 9816.139355
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 C 0.177 3.823
3 N -0.343 5.343
4 N -0.333 5.333
5 C 0.174 3.826
6 N -0.469 5.469
7 C 0.127 3.873
8 C -0.113 4.113
9 H 0.116 0.884
10 C 0.525 3.475
11 O -0.579 6.579
12 N -0.688 5.688
13 C 0.139 3.861
14 H 0.085 0.915
15 C 0.180 3.820
16 N -0.616 5.616
17 C -0.236 4.236
18 H 0.082 0.918
19 C -0.062 4.062
20 N -0.947 5.947
21 Si 0.968 3.032
22 H -0.289 1.289
23 H -0.300 1.300
24 H -0.266 1.266
25 C 0.136 3.864
26 C -0.071 4.071
27 C -0.125 4.125
28 C -0.129 4.129
29 C -0.107 4.107
30 C -0.027 4.027
31 H 0.102 0.898
32 H 0.102 0.898
33 H 0.090 0.910
34 H 0.100 0.900
35 H 0.104 0.896
36 H 0.411 0.589
37 H 0.027 0.973
38 H -0.008 1.008
39 H 0.244 0.756
40 H 0.019 0.981
41 H 0.041 0.959
42 H 0.071 0.929
43 H 0.074 0.926
44 H 0.066 0.934
45 H 0.029 0.971
46 H 0.077 0.923
47 H 0.071 0.929
48 H 0.082 0.918
49 H 0.119 0.881
50 H 0.115 0.885
51 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.360 9.267 12.019 17.327
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.091 4.091
3 N -0.184 5.184
4 N -0.172 5.172
5 C -0.095 4.095
6 N -0.160 5.160
7 C 0.004 3.996
8 C -0.135 4.135
9 H 0.134 0.866
10 C 0.311 3.689
11 O -0.459 6.459
12 N -0.339 5.339
13 C 0.033 3.967
14 H 0.103 0.897
15 C 0.054 3.946
16 N -0.342 5.342
17 C -0.365 4.365
18 H 0.100 0.900
19 C -0.256 4.256
20 N -0.596 5.596
21 Si 0.797 3.203
22 H -0.216 1.216
23 H -0.227 1.227
24 H -0.190 1.190
25 C 0.011 3.989
26 C -0.072 4.072
27 C -0.183 4.183
28 C -0.187 4.187
29 C -0.145 4.145
30 C -0.067 4.067
31 H 0.120 0.880
32 H 0.120 0.880
33 H 0.109 0.891
34 H 0.118 0.882
35 H 0.122 0.878
36 H 0.249 0.751
37 H 0.046 0.954
38 H 0.010 0.990
39 H 0.053 0.947
40 H 0.037 0.963
41 H 0.059 0.941
42 H 0.090 0.910
43 H 0.093 0.907
44 H 0.085 0.915
45 H 0.048 0.952
46 H 0.096 0.904
47 H 0.090 0.910
48 H 0.101 0.899
49 H 0.138 0.862
50 H 0.133 0.867
51 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges 7.897 10.448 12.180 17.885
hybrid contribution -1.144 -1.534 -1.657 2.531
sum 6.754 8.914 10.522 15.355
Atomic orbital electron populations
1.20416 0.81271 1.05570 1.05398 1.25338 0.98545 0.82391 1.02795
1.74376 0.96717 1.25281 1.22003 1.73920 1.12696 1.09800 1.20791
1.25458 0.88416 0.92305 1.03288 1.46113 1.06948 1.08732 1.54185
1.21758 0.98063 0.74488 1.05252 1.21545 0.97141 0.90491 1.04336
0.86608 1.20399 0.83567 0.87983 0.76965 1.90722 1.25420 1.82738
1.47065 1.45652 1.18443 1.05509 1.64272 1.22160 0.96966 0.80091
0.97470 0.89749 1.21410 0.90098 0.95295 0.87803 1.44683 1.04390
1.83065 1.02083 1.19371 0.92364 1.42427 0.82351 0.90045 1.25564
0.95658 1.02701 1.01628 1.70169 0.97618 1.57217 1.34613 0.85220
0.76993 0.77381 0.80685 1.21626 1.22656 1.19012 1.21689 0.88507
0.98035 0.90681 1.21798 0.94566 0.96170 0.94657 1.21719 0.96538
0.99546 1.00477 1.21715 1.02014 0.95093 0.99845 1.21747 0.96269
0.96539 0.99944 1.20458 0.89807 0.90151 1.06243 0.87951 0.87956
0.89084 0.88202 0.87764 0.75079 0.95444 0.98964 0.94694 0.96332
0.94073 0.90997 0.90748 0.91486 0.95210 0.90442 0.91002 0.89904
0.86226 0.86732 0.85770
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.07 10.29 71.24 0.73 -0.34 16
2 C 0.18 4.35 8.07 138.14 1.11 5.46 16
3 N -0.34 -10.59 12.23 -50.46 -0.62 -11.21 16
4 N -0.33 -10.07 12.21 -50.28 -0.61 -10.69 16
5 C 0.17 4.02 7.75 138.14 1.07 5.09 16
6 N -0.47 -10.57 3.11 -504.65 -1.57 -12.14 16
7 C 0.13 2.59 5.48 86.53 0.47 3.06 16
8 C -0.11 -2.14 2.54 -11.39 -0.03 -2.16 16
9 H 0.12 2.15 8.12 -2.38 -0.02 2.13 16
10 C 0.52 14.21 7.15 87.66 0.63 14.83 16
11 O -0.58 -20.74 15.57 -3.05 -0.05 -20.79 16
12 N -0.69 -18.06 4.52 -435.95 -1.97 -20.03 16
13 C 0.14 4.56 2.56 46.38 0.12 4.68 16
14 H 0.08 2.86 7.63 -2.39 -0.02 2.85 16
15 C 0.18 8.49 4.81 86.86 0.42 8.90 16
16 N -0.62 -29.01 3.39 -691.95 -2.35 -31.36 16
17 C -0.24 -12.54 10.24 84.03 0.86 -11.68 16
18 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16
19 C -0.06 -3.45 5.40 84.86 0.46 -2.99 16
20 N -0.95 -56.80 10.68 21.65 0.23 -56.57 16
21 Si 0.97 44.94 29.56 68.60 2.03 46.97 16
22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16
23 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16
24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
25 C 0.14 4.74 6.42 86.73 0.56 5.29 16
26 C -0.07 -1.89 0.80 -50.99 -0.04 -1.93 16
27 C -0.13 -2.08 8.07 71.98 0.58 -1.50 16
28 C -0.13 -3.30 8.39 71.98 0.60 -2.70 16
29 C -0.11 -1.27 5.22 30.80 0.16 -1.11 16
30 C -0.03 -0.36 6.34 30.04 0.19 -0.17 16
31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16
32 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16
33 H 0.09 1.23 7.76 -2.38 -0.02 1.21 16
34 H 0.10 2.12 7.85 -2.39 -0.02 2.10 16
35 H 0.10 2.12 7.79 -2.39 -0.02 2.10 16
36 H 0.41 8.48 6.21 -92.71 -0.58 7.91 16
37 H 0.03 1.52 6.94 -2.38 -0.02 1.51 16
38 H -0.01 -0.41 7.74 -2.38 -0.02 -0.43 16
39 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16
40 H 0.02 0.68 7.84 -2.38 -0.02 0.66 16
41 H 0.04 1.30 7.77 -2.38 -0.02 1.28 16
42 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16
43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
44 H 0.07 0.93 6.36 -2.39 -0.02 0.91 16
45 H 0.03 0.96 7.59 -2.39 -0.02 0.94 16
46 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
47 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16
48 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16
49 H 0.12 0.84 7.32 -2.39 -0.02 0.82 16
50 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16
51 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16
Total: -1.00 -80.32 398.45 3.35 -76.97
By element:
Atomic # 1 Polarization: 15.73 SS G_CDS: 0.36 Total: 16.09 kcal
Atomic # 6 Polarization: 14.85 SS G_CDS: 7.90 Total: 22.75 kcal
Atomic # 7 Polarization: -135.10 SS G_CDS: -6.89 Total: -141.99 kcal
Atomic # 8 Polarization: -20.74 SS G_CDS: -0.05 Total: -20.79 kcal
Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal
Total: -80.32 3.35 -76.97 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000977630852.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.188 kcal
(2) G-P(sol) polarization free energy of solvation -80.320 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.972 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.216 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.31 seconds