Wall clock time and date at job start Wed Apr 1 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30839 * 126.46419 * 2 1 4 4 N 1.28910 * 109.74007 * 180.02562 * 3 2 1 5 5 C 1.29830 * 109.47914 * 0.02562 * 4 3 2 6 6 N 1.34694 * 126.47006 * 180.02562 * 2 1 3 7 7 C 1.46257 * 128.84313 * 359.93113 * 6 2 1 8 8 C 1.53319 * 108.73238 * 197.04477 * 7 6 2 9 9 H 1.09002 * 109.45046 * 69.72701 * 8 7 6 10 10 C 1.50695 * 109.45133 * 189.68170 * 8 7 6 11 11 O 1.21274 * 120.00413 * 0.31689 * 10 8 7 12 12 N 1.34784 * 119.99635 * 180.02562 * 10 8 7 13 13 C 1.46499 * 119.99971 * 179.97438 * 12 10 8 14 14 H 1.09010 * 110.88534 * 328.88319 * 13 12 10 15 15 C 1.54911 * 111.00491 * 92.79956 * 13 12 10 16 16 N 1.47433 * 104.82799 * 81.06683 * 15 13 12 17 17 C 1.36938 * 125.64625 * 204.08432 * 16 15 13 18 18 H 1.08000 * 119.99530 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99649 * 0.05107 * 17 16 15 20 20 N 1.31614 * 120.00815 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99206 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47416 * 90.00309 * 21 19 17 23 23 H 1.48507 * 109.46676 * 210.00139 * 21 19 17 24 24 H 1.48498 * 109.47520 * 329.99852 * 21 19 17 25 25 C 1.47019 * 108.70197 * 24.12656 * 16 15 13 26 26 C 1.54325 * 107.27453 * 358.94490 * 25 16 15 27 27 C 1.52999 * 110.71858 * 219.44186 * 26 25 16 28 28 C 1.52994 * 110.87719 * 96.23741 * 26 25 16 29 29 C 1.53139 * 109.56250 * 309.70655 * 8 7 6 30 30 C 1.50799 * 128.52018 * 179.87161 * 5 4 3 31 31 H 1.08994 * 109.47455 * 269.99711 * 1 2 3 32 32 H 1.09001 * 109.47168 * 30.00410 * 1 2 3 33 33 H 1.09006 * 109.47031 * 149.99910 * 1 2 3 34 34 H 1.08999 * 109.59408 * 77.26672 * 7 6 2 35 35 H 1.09009 * 109.71834 * 316.89217 * 7 6 2 36 36 H 0.96999 * 120.00044 * 0.02562 * 12 10 8 37 37 H 1.08998 * 110.36808 * 199.90112 * 15 13 12 38 38 H 1.08995 * 110.36972 * 322.23155 * 15 13 12 39 39 H 0.96993 * 120.00642 * 179.97438 * 20 19 17 40 40 H 1.08992 * 109.88332 * 239.52186 * 25 16 15 41 41 H 1.09003 * 110.00791 * 118.42695 * 25 16 15 42 42 H 1.09001 * 109.47036 * 173.51504 * 27 26 25 43 43 H 1.09000 * 109.47255 * 293.51805 * 27 26 25 44 44 H 1.08999 * 109.46984 * 53.52097 * 27 26 25 45 45 H 1.09004 * 109.47462 * 306.39200 * 28 26 25 46 46 H 1.08996 * 109.47279 * 66.38611 * 28 26 25 47 47 H 1.08993 * 109.47656 * 186.39032 * 28 26 25 48 48 H 1.09001 * 109.49358 * 189.38913 * 29 8 7 49 49 H 1.09000 * 109.49834 * 309.48538 * 29 8 7 50 50 H 1.09003 * 109.72946 * 315.61214 * 30 5 4 51 51 H 1.08999 * 109.73831 * 76.25816 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6813 -0.0005 5 6 3.5815 -0.6155 -0.0015 6 7 2.3076 -1.0832 -0.0005 7 6 1.9368 -2.4979 0.0003 8 6 3.1552 -3.3261 0.4249 9 1 3.3625 -3.1517 1.4807 10 6 2.8690 -4.7891 0.2045 11 8 1.8005 -5.1360 -0.2522 12 7 3.8030 -5.7118 0.5097 13 6 3.5247 -7.1342 0.2960 14 1 2.4633 -7.3463 0.4259 15 6 4.0166 -7.5927 -1.0996 16 7 5.4624 -7.8273 -0.9317 17 6 6.3981 -7.7905 -1.9308 18 1 7.4374 -7.9776 -1.7044 19 6 6.0108 -7.5124 -3.2345 20 7 4.7445 -7.2834 -3.5103 21 14 7.2873 -7.4630 -4.5975 22 1 7.4293 -8.8163 -5.1920 23 1 6.8548 -6.5045 -5.6461 24 1 8.5925 -7.0287 -4.0379 25 6 5.7330 -8.1082 0.4858 26 6 4.3874 -8.0170 1.2360 27 6 4.5707 -7.3409 2.5962 28 6 3.7611 -9.4029 1.4026 29 6 4.3716 -2.9131 -0.4086 30 6 4.8051 -1.4969 -0.0050 31 1 -0.3634 -0.0001 1.0276 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5139 34 1 1.6242 -2.7944 -1.0010 35 1 1.1195 -2.6636 0.7023 36 1 4.6591 -5.4341 0.8714 37 1 3.5146 -8.5140 -1.3949 38 1 3.8425 -6.8110 -1.8389 39 1 4.4739 -7.0886 -4.4211 40 1 6.4298 -7.3705 0.8835 41 1 6.1508 -9.1091 0.5945 42 1 3.5960 -7.1832 3.0578 43 1 5.1786 -7.9773 3.2393 44 1 5.0681 -6.3806 2.4605 45 1 3.6905 -9.8892 0.4296 46 1 4.3824 -10.0051 2.0654 47 1 2.7641 -9.3020 1.8314 48 1 5.1904 -3.6093 -0.2270 49 1 4.1095 -2.9270 -1.4666 50 1 5.5305 -1.1166 -0.7243 51 1 5.2487 -1.5149 0.9905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977630860.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:41 Heat of formation + Delta-G solvation = 59.479067 kcal Electronic energy + Delta-G solvation = -32273.614589 eV Core-core repulsion = 28209.639766 eV Total energy + Delta-G solvation = -4063.974823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.38986 -40.17227 -38.45292 -36.66700 -34.33672 -33.91491 -33.19606 -31.64640 -30.80255 -30.57433 -28.26210 -27.45349 -26.97857 -25.72269 -25.06070 -23.52273 -23.09746 -21.51255 -20.79435 -20.10122 -19.56481 -18.72978 -17.50977 -16.81087 -16.69459 -16.21285 -16.04496 -15.28993 -14.93228 -14.70549 -14.33021 -14.19686 -14.00378 -13.87356 -13.84000 -13.68924 -13.27379 -13.23698 -12.86787 -12.82229 -12.41556 -12.25945 -12.21506 -12.01250 -11.86672 -11.61133 -11.42437 -11.33723 -11.27008 -11.18783 -11.07566 -10.85961 -10.52805 -10.38429 -10.28765 -10.18384 -10.08482 -9.92072 -9.78242 -9.61218 -9.03528 -8.78585 -8.52584 -6.91161 -5.72550 -3.15606 1.72800 2.30277 2.74055 2.79187 3.33653 3.36600 3.39433 3.41507 3.95899 4.15339 4.29602 4.40893 4.41557 4.46625 4.75514 4.85796 4.86953 5.01991 5.07737 5.14457 5.16852 5.18870 5.20319 5.37050 5.43536 5.46638 5.51042 5.52218 5.65160 5.68841 5.74850 5.78143 5.90281 5.92215 5.93638 6.00364 6.07307 6.12000 6.14725 6.29106 6.39601 6.49039 6.58441 6.61786 6.76786 6.85308 7.36320 7.53664 7.72608 7.82410 8.28016 8.42438 8.68061 9.12964 9.74479 10.37909 11.30064 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.003472 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.600211 B = 8061.706339 C = 9520.770626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.176 3.824 3 N -0.303 5.303 4 N -0.294 5.294 5 C 0.177 3.823 6 N -0.467 5.467 7 C 0.124 3.876 8 C -0.120 4.120 9 H 0.106 0.894 10 C 0.525 3.475 11 O -0.542 6.542 12 N -0.693 5.693 13 C 0.122 3.878 14 H 0.089 0.911 15 C 0.147 3.853 16 N -0.600 5.600 17 C -0.225 4.225 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.142 3.858 26 C -0.087 4.087 27 C -0.130 4.130 28 C -0.129 4.129 29 C -0.119 4.119 30 C -0.031 4.031 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.398 0.602 37 H 0.021 0.979 38 H 0.113 0.887 39 H 0.252 0.748 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.097 0.903 49 H 0.083 0.917 50 H 0.105 0.895 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 6.167 12.449 14.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 N -0.144 5.144 4 N -0.133 5.133 5 C -0.091 4.091 6 N -0.158 5.158 7 C 0.001 3.999 8 C -0.142 4.142 9 H 0.124 0.876 10 C 0.309 3.691 11 O -0.420 6.420 12 N -0.343 5.343 13 C 0.017 3.983 14 H 0.107 0.893 15 C 0.021 3.979 16 N -0.327 5.327 17 C -0.354 4.354 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.566 5.566 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.016 3.984 26 C -0.088 4.088 27 C -0.188 4.188 28 C -0.187 4.187 29 C -0.158 4.158 30 C -0.071 4.071 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.233 0.767 37 H 0.038 0.962 38 H 0.131 0.869 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.116 0.884 49 H 0.102 0.898 50 H 0.123 0.877 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.738 7.377 11.883 15.118 hybrid contribution 0.715 -1.368 -0.609 1.659 sum -5.023 6.009 11.275 13.728 Atomic orbital electron populations 1.20211 0.83779 1.04656 1.03949 1.24639 0.97077 0.82806 1.04596 1.74456 0.96179 1.23763 1.19977 1.74026 1.12259 1.08128 1.18929 1.24750 0.87168 0.92513 1.04682 1.46010 1.06986 1.08573 1.54262 1.21777 0.97671 0.75059 1.05387 1.21590 0.96266 0.93536 1.02848 0.87616 1.19811 0.84497 0.86609 0.78163 1.90714 1.24916 1.81767 1.44616 1.45729 1.17424 1.06803 1.64307 1.22585 0.98744 0.78296 0.98658 0.89320 1.22309 0.83279 1.00327 0.91993 1.44460 1.03861 1.82669 1.01666 1.19023 0.88710 1.41110 0.86527 0.90564 1.24759 0.96283 1.02022 0.97193 1.69781 1.13792 1.54335 1.18666 0.86141 0.80314 0.77462 0.81955 1.21639 1.21697 1.20707 1.21407 0.93016 0.97717 0.86219 1.21847 0.96975 0.95601 0.94407 1.21718 1.01143 0.99939 0.96022 1.21688 0.99605 0.95120 1.02244 1.21760 0.96972 0.96050 1.00974 1.20260 0.91132 0.91225 1.04449 0.89685 0.88734 0.90211 0.87734 0.88054 0.76690 0.96166 0.86935 0.93684 0.96039 0.95846 0.92892 0.92688 0.92979 0.91739 0.92664 0.93067 0.88445 0.89788 0.87656 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.29 36.00 0.37 -0.17 16 2 C 0.18 2.23 8.07 -155.45 -1.25 0.98 16 3 N -0.30 -4.78 12.23 32.70 0.40 -4.38 16 4 N -0.29 -4.73 12.21 32.75 0.40 -4.33 16 5 C 0.18 2.35 7.75 -155.32 -1.20 1.15 16 6 N -0.47 -5.73 3.11 -110.86 -0.35 -6.08 16 7 C 0.12 1.35 5.46 -4.01 -0.02 1.33 16 8 C -0.12 -1.30 2.54 -91.54 -0.23 -1.53 16 9 H 0.11 0.92 8.12 -51.93 -0.42 0.50 16 10 C 0.53 7.57 7.15 -10.98 -0.08 7.49 16 11 O -0.54 -9.71 15.47 5.56 0.09 -9.62 16 12 N -0.69 -10.07 4.37 -51.73 -0.23 -10.29 16 13 C 0.12 2.08 2.66 -65.78 -0.18 1.90 16 14 H 0.09 1.56 7.44 -51.92 -0.39 1.17 16 15 C 0.15 3.29 5.28 -2.52 -0.01 3.27 16 16 N -0.60 -13.79 3.39 -170.07 -0.58 -14.37 16 17 C -0.23 -5.83 10.27 -15.06 -0.15 -5.99 16 18 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 20 N -0.92 -25.61 10.09 55.49 0.56 -25.05 16 21 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.14 2.60 6.41 -3.06 -0.02 2.58 16 26 C -0.09 -1.28 0.80 -152.68 -0.12 -1.41 16 27 C -0.13 -1.49 8.07 37.16 0.30 -1.19 16 28 C -0.13 -1.78 8.41 37.15 0.31 -1.46 16 29 C -0.12 -1.30 5.23 -26.40 -0.14 -1.44 16 30 C -0.03 -0.32 6.34 -27.57 -0.17 -0.49 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 34 H 0.10 1.27 7.79 -51.93 -0.40 0.87 16 35 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.40 5.10 6.51 -40.82 -0.27 4.83 16 37 H 0.02 0.50 7.81 -51.93 -0.41 0.10 16 38 H 0.11 2.95 5.87 -51.93 -0.30 2.64 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.02 0.38 7.76 -51.93 -0.40 -0.02 16 41 H 0.02 0.44 7.85 -51.93 -0.41 0.03 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.55 6.48 -51.93 -0.34 0.22 16 45 H 0.06 1.03 7.59 -51.93 -0.39 0.63 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.10 1.04 7.32 -51.93 -0.38 0.66 16 49 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 50 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 51 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -33.12 398.07 -9.73 -42.85 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.30 Total: 4.31 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -2.70 Total: 4.74 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: 0.21 Total: -64.49 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.12 -9.73 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977630860.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.331 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds