Wall clock time and date at job start Wed Apr 1 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30839 * 126.46419 * 2 1 4 4 N 1.28910 * 109.74007 * 180.02562 * 3 2 1 5 5 C 1.29830 * 109.47914 * 0.02562 * 4 3 2 6 6 N 1.34694 * 126.47006 * 180.02562 * 2 1 3 7 7 C 1.46257 * 128.84313 * 359.93113 * 6 2 1 8 8 C 1.53319 * 108.73238 * 197.04477 * 7 6 2 9 9 H 1.09002 * 109.45046 * 69.72701 * 8 7 6 10 10 C 1.50695 * 109.45133 * 189.68170 * 8 7 6 11 11 O 1.21274 * 120.00413 * 0.31689 * 10 8 7 12 12 N 1.34784 * 119.99635 * 180.02562 * 10 8 7 13 13 C 1.46499 * 119.99971 * 179.97438 * 12 10 8 14 14 H 1.09010 * 110.88534 * 328.88319 * 13 12 10 15 15 C 1.54911 * 111.00491 * 92.79956 * 13 12 10 16 16 N 1.47433 * 104.82799 * 81.06683 * 15 13 12 17 17 C 1.36938 * 125.64625 * 204.08432 * 16 15 13 18 18 H 1.08000 * 119.99530 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99649 * 0.05107 * 17 16 15 20 20 N 1.31614 * 120.00815 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99206 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47416 * 90.00309 * 21 19 17 23 23 H 1.48507 * 109.46676 * 210.00139 * 21 19 17 24 24 H 1.48498 * 109.47520 * 329.99852 * 21 19 17 25 25 C 1.47019 * 108.70197 * 24.12656 * 16 15 13 26 26 C 1.54325 * 107.27453 * 358.94490 * 25 16 15 27 27 C 1.52999 * 110.71858 * 219.44186 * 26 25 16 28 28 C 1.52994 * 110.87719 * 96.23741 * 26 25 16 29 29 C 1.53139 * 109.56250 * 309.70655 * 8 7 6 30 30 C 1.50799 * 128.52018 * 179.87161 * 5 4 3 31 31 H 1.08994 * 109.47455 * 269.99711 * 1 2 3 32 32 H 1.09001 * 109.47168 * 30.00410 * 1 2 3 33 33 H 1.09006 * 109.47031 * 149.99910 * 1 2 3 34 34 H 1.08999 * 109.59408 * 77.26672 * 7 6 2 35 35 H 1.09009 * 109.71834 * 316.89217 * 7 6 2 36 36 H 0.96999 * 120.00044 * 0.02562 * 12 10 8 37 37 H 1.08998 * 110.36808 * 199.90112 * 15 13 12 38 38 H 1.08995 * 110.36972 * 322.23155 * 15 13 12 39 39 H 0.96993 * 120.00642 * 179.97438 * 20 19 17 40 40 H 1.08992 * 109.88332 * 239.52186 * 25 16 15 41 41 H 1.09003 * 110.00791 * 118.42695 * 25 16 15 42 42 H 1.09001 * 109.47036 * 173.51504 * 27 26 25 43 43 H 1.09000 * 109.47255 * 293.51805 * 27 26 25 44 44 H 1.08999 * 109.46984 * 53.52097 * 27 26 25 45 45 H 1.09004 * 109.47462 * 306.39200 * 28 26 25 46 46 H 1.08996 * 109.47279 * 66.38611 * 28 26 25 47 47 H 1.08993 * 109.47656 * 186.39032 * 28 26 25 48 48 H 1.09001 * 109.49358 * 189.38913 * 29 8 7 49 49 H 1.09000 * 109.49834 * 309.48538 * 29 8 7 50 50 H 1.09003 * 109.72946 * 315.61214 * 30 5 4 51 51 H 1.08999 * 109.73831 * 76.25816 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5191 0.6813 -0.0005 5 6 3.5815 -0.6155 -0.0015 6 7 2.3076 -1.0832 -0.0005 7 6 1.9368 -2.4979 0.0003 8 6 3.1552 -3.3261 0.4249 9 1 3.3625 -3.1517 1.4807 10 6 2.8690 -4.7891 0.2045 11 8 1.8005 -5.1360 -0.2522 12 7 3.8030 -5.7118 0.5097 13 6 3.5247 -7.1342 0.2960 14 1 2.4633 -7.3463 0.4259 15 6 4.0166 -7.5927 -1.0996 16 7 5.4624 -7.8273 -0.9317 17 6 6.3981 -7.7905 -1.9308 18 1 7.4374 -7.9776 -1.7044 19 6 6.0108 -7.5124 -3.2345 20 7 4.7445 -7.2834 -3.5103 21 14 7.2873 -7.4630 -4.5975 22 1 7.4293 -8.8163 -5.1920 23 1 6.8548 -6.5045 -5.6461 24 1 8.5925 -7.0287 -4.0379 25 6 5.7330 -8.1082 0.4858 26 6 4.3874 -8.0170 1.2360 27 6 4.5707 -7.3409 2.5962 28 6 3.7611 -9.4029 1.4026 29 6 4.3716 -2.9131 -0.4086 30 6 4.8051 -1.4969 -0.0050 31 1 -0.3634 -0.0001 1.0276 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5139 34 1 1.6242 -2.7944 -1.0010 35 1 1.1195 -2.6636 0.7023 36 1 4.6591 -5.4341 0.8714 37 1 3.5146 -8.5140 -1.3949 38 1 3.8425 -6.8110 -1.8389 39 1 4.4739 -7.0886 -4.4211 40 1 6.4298 -7.3705 0.8835 41 1 6.1508 -9.1091 0.5945 42 1 3.5960 -7.1832 3.0578 43 1 5.1786 -7.9773 3.2393 44 1 5.0681 -6.3806 2.4605 45 1 3.6905 -9.8892 0.4296 46 1 4.3824 -10.0051 2.0654 47 1 2.7641 -9.3020 1.8314 48 1 5.1904 -3.6093 -0.2270 49 1 4.1095 -2.9270 -1.4666 50 1 5.5305 -1.1166 -0.7243 51 1 5.2487 -1.5149 0.9905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977630860.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:40 Heat of formation + Delta-G solvation = 39.412154 kcal Electronic energy + Delta-G solvation = -32274.484755 eV Core-core repulsion = 28209.639766 eV Total energy + Delta-G solvation = -4064.844990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -44.38157 -41.41421 -39.76581 -37.73896 -35.67917 -35.22294 -34.45592 -32.61003 -32.56445 -31.45202 -29.75779 -28.33733 -28.05381 -27.39544 -26.15327 -24.84684 -24.22229 -22.56031 -22.17869 -21.44261 -20.63281 -19.95518 -18.68641 -18.55057 -17.68136 -17.43486 -17.20116 -16.55082 -16.29865 -15.93787 -15.63415 -15.39909 -15.22638 -14.98706 -14.86813 -14.81569 -14.60163 -14.09320 -13.92680 -13.69853 -13.63549 -13.50445 -13.23595 -13.17734 -13.03118 -12.98880 -12.80384 -12.64329 -12.60903 -12.53408 -12.26988 -12.10186 -12.07900 -11.76140 -11.73181 -11.43033 -11.39364 -11.32519 -11.15787 -10.87621 -10.71424 -10.03152 -9.92949 -8.81474 -7.73969 -5.17832 0.78192 1.35958 1.46384 1.47256 1.55415 1.58133 1.75509 2.24445 2.49985 3.05308 3.25351 3.35749 3.40150 3.52965 3.57649 3.62216 3.72976 3.91353 3.97895 4.00624 4.11107 4.12566 4.22515 4.32541 4.45601 4.53120 4.57179 4.62636 4.66474 4.78310 4.81565 4.81965 4.86366 4.91904 4.94398 4.96723 5.00239 5.03174 5.08042 5.13968 5.21941 5.24057 5.33350 5.37315 5.52181 5.56786 5.71203 5.85956 5.86362 6.33974 6.59841 7.12620 7.26888 7.65639 7.82460 8.45215 9.25947 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.003472 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.600211 B = 8061.706339 C = 9520.770626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.180 3.820 3 N -0.344 5.344 4 N -0.333 5.333 5 C 0.174 3.826 6 N -0.468 5.468 7 C 0.127 3.873 8 C -0.107 4.107 9 H 0.142 0.858 10 C 0.525 3.475 11 O -0.579 6.579 12 N -0.687 5.687 13 C 0.138 3.862 14 H 0.084 0.916 15 C 0.154 3.846 16 N -0.616 5.616 17 C -0.228 4.228 18 H 0.083 0.917 19 C -0.062 4.062 20 N -0.946 5.946 21 Si 0.968 3.032 22 H -0.293 1.293 23 H -0.301 1.301 24 H -0.266 1.266 25 C 0.137 3.863 26 C -0.073 4.073 27 C -0.124 4.124 28 C -0.128 4.128 29 C -0.112 4.112 30 C -0.023 4.023 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.410 0.590 37 H -0.019 1.019 38 H 0.072 0.928 39 H 0.241 0.759 40 H 0.039 0.961 41 H 0.020 0.980 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.031 0.969 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.055 0.945 50 H 0.109 0.891 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 6.327 15.516 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.088 4.088 3 N -0.185 5.185 4 N -0.172 5.172 5 C -0.094 4.094 6 N -0.159 5.159 7 C 0.004 3.996 8 C -0.128 4.128 9 H 0.160 0.840 10 C 0.311 3.689 11 O -0.460 6.460 12 N -0.337 5.337 13 C 0.031 3.969 14 H 0.102 0.898 15 C 0.028 3.972 16 N -0.342 5.342 17 C -0.357 4.357 18 H 0.100 0.900 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.798 3.202 22 H -0.221 1.221 23 H -0.228 1.228 24 H -0.190 1.190 25 C 0.012 3.988 26 C -0.075 4.075 27 C -0.182 4.182 28 C -0.186 4.186 29 C -0.151 4.151 30 C -0.063 4.063 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.141 0.859 36 H 0.247 0.753 37 H -0.001 1.001 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.039 0.961 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.050 0.950 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.121 0.879 49 H 0.074 0.926 50 H 0.127 0.873 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.009 7.549 14.999 17.523 hybrid contribution 0.486 -1.492 -1.592 2.236 sum -4.524 6.057 13.407 15.392 Atomic orbital electron populations 1.20437 0.80818 1.05651 1.05632 1.25414 0.98651 0.82203 1.02510 1.74371 0.96597 1.25402 1.22099 1.73931 1.12874 1.09665 1.20713 1.25266 0.88375 0.92250 1.03550 1.46103 1.06730 1.08896 1.54179 1.21797 0.98360 0.74312 1.05091 1.21521 0.95996 0.90460 1.04825 0.84049 1.20394 0.83716 0.87952 0.76844 1.90705 1.26590 1.82629 1.46037 1.45609 1.18125 1.05784 1.64163 1.22168 0.98679 0.80161 0.95857 0.89827 1.21969 0.83361 0.97338 0.94569 1.44666 1.03567 1.82540 1.03379 1.19392 0.89565 1.39364 0.87377 0.89965 1.25465 0.97726 1.02906 0.99330 1.70070 1.15459 1.56015 1.18047 0.85220 0.78984 0.76721 0.79273 1.22051 1.22752 1.19015 1.21649 0.95419 0.97778 0.83942 1.21813 0.94137 0.95957 0.95549 1.21691 1.02561 1.00400 0.93502 1.21697 1.01183 0.94586 1.01094 1.21673 0.97188 0.96901 0.99335 1.20370 0.90016 0.89609 1.06262 0.87518 0.88072 0.88856 0.89479 0.85923 0.75305 1.00089 0.90979 0.94887 0.94300 0.96148 0.91487 0.90864 0.91797 0.94952 0.90495 0.91219 0.87850 0.92639 0.87307 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.29 71.23 0.73 -0.22 16 2 C 0.18 4.37 8.07 138.14 1.11 5.49 16 3 N -0.34 -10.80 12.23 -50.47 -0.62 -11.42 16 4 N -0.33 -10.63 12.21 -50.29 -0.61 -11.24 16 5 C 0.17 4.44 7.75 138.14 1.07 5.51 16 6 N -0.47 -10.85 3.11 -504.67 -1.57 -12.42 16 7 C 0.13 2.57 5.46 86.53 0.47 3.04 16 8 C -0.11 -2.06 2.54 -11.39 -0.03 -2.08 16 9 H 0.14 1.82 8.12 -2.39 -0.02 1.80 16 10 C 0.52 14.45 7.15 87.65 0.63 15.08 16 11 O -0.58 -20.67 15.47 -3.01 -0.05 -20.72 16 12 N -0.69 -18.78 4.37 -435.95 -1.91 -20.68 16 13 C 0.14 4.59 2.66 46.38 0.12 4.71 16 14 H 0.08 2.91 7.44 -2.38 -0.02 2.90 16 15 C 0.15 7.16 5.28 86.85 0.46 7.62 16 16 N -0.62 -28.48 3.39 -691.98 -2.35 -30.83 16 17 C -0.23 -11.86 10.27 84.03 0.86 -10.99 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 19 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 20 N -0.95 -55.21 10.09 21.65 0.22 -54.99 16 21 Si 0.97 44.42 29.55 68.60 2.03 46.45 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C 0.14 4.75 6.41 86.73 0.56 5.31 16 26 C -0.07 -2.00 0.80 -51.00 -0.04 -2.04 16 27 C -0.12 -2.27 8.07 71.98 0.58 -1.69 16 28 C -0.13 -3.29 8.41 71.98 0.61 -2.68 16 29 C -0.11 -2.29 5.23 30.81 0.16 -2.13 16 30 C -0.02 -0.43 6.34 30.05 0.19 -0.24 16 31 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.09 8.04 -2.38 -0.02 1.07 16 34 H 0.09 2.10 7.79 -2.39 -0.02 2.08 16 35 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.41 9.27 6.51 -92.71 -0.60 8.67 16 37 H -0.02 -0.99 7.81 -2.39 -0.02 -1.01 16 38 H 0.07 3.98 5.87 -2.39 -0.01 3.97 16 39 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 40 H 0.04 1.24 7.76 -2.39 -0.02 1.22 16 41 H 0.02 0.73 7.85 -2.39 -0.02 0.71 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.06 1.04 6.48 -2.39 -0.02 1.02 16 45 H 0.03 1.02 7.59 -2.38 -0.02 1.01 16 46 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.10 2.00 7.32 -2.39 -0.02 1.99 16 49 H 0.05 1.46 8.12 -2.39 -0.02 1.44 16 50 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -76.99 398.07 3.43 -73.57 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.33 Total: 20.48 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 7.95 Total: 21.81 kcal Atomic # 7 Polarization: -134.75 SS G_CDS: -6.84 Total: -141.59 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.72 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -76.99 3.43 -73.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977630860.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.977 kcal (2) G-P(sol) polarization free energy of solvation -76.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds