Wall clock time and date at job start Wed Apr 1 2020 05:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33468 * 125.49678 * 2 1 4 4 C 1.30325 * 109.72751 * 179.97438 * 3 2 1 5 5 N 1.34677 * 108.04371 * 0.08826 * 4 3 2 6 6 N 1.30973 * 125.49670 * 179.97438 * 2 1 3 7 7 C 1.46291 * 125.05069 * 179.85086 * 5 4 3 8 8 C 1.53310 * 108.77109 * 342.97465 * 7 5 4 9 9 H 1.09004 * 109.46307 * 290.14236 * 8 7 5 10 10 C 1.50700 * 109.46992 * 170.14471 * 8 7 5 11 11 O 1.21277 * 120.00187 * 274.42692 * 10 8 7 12 12 N 1.34777 * 119.99642 * 94.42705 * 10 8 7 13 13 C 1.46934 * 120.60830 * 354.22544 * 12 10 8 14 14 C 1.53194 * 108.77224 * 233.58195 * 13 12 10 15 15 C 1.53038 * 109.33639 * 305.41168 * 14 13 12 16 16 N 1.46502 * 109.45753 * 181.37210 * 15 14 13 17 17 C 1.46499 * 120.00240 * 299.99490 * 16 15 14 18 18 C 1.36937 * 119.99943 * 120.00150 * 16 15 14 19 19 H 1.08008 * 120.00259 * 34.04146 * 18 16 15 20 20 C 1.38812 * 120.00148 * 214.03968 * 18 16 15 21 21 N 1.31624 * 119.99808 * 5.43471 * 20 18 16 22 22 Si 1.86795 * 120.00392 * 185.43206 * 20 18 16 23 23 H 1.48505 * 109.47152 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47366 * 119.99920 * 22 20 18 25 25 H 1.48505 * 109.47116 * 240.00400 * 22 20 18 26 26 C 1.53034 * 109.54146 * 61.35096 * 15 14 13 27 27 C 1.46930 * 120.62832 * 174.24879 * 12 10 8 28 28 C 1.53157 * 109.48385 * 50.14113 * 8 7 5 29 29 C 1.50936 * 127.90850 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.46944 * 89.97617 * 1 2 3 31 31 H 1.09002 * 109.47270 * 209.97165 * 1 2 3 32 32 H 1.09003 * 109.47281 * 329.97607 * 1 2 3 33 33 H 1.08999 * 109.59007 * 223.18880 * 7 5 4 34 34 H 1.09001 * 109.59529 * 102.75701 * 7 5 4 35 35 H 1.08998 * 109.56360 * 113.80760 * 13 12 10 36 36 H 1.09001 * 109.61475 * 353.37898 * 13 12 10 37 37 H 1.09004 * 109.49353 * 185.44622 * 14 13 12 38 38 H 1.08997 * 109.49763 * 65.37894 * 14 13 12 39 39 H 1.09008 * 109.45904 * 301.32844 * 15 14 13 40 40 H 1.09002 * 109.46742 * 85.04097 * 17 16 15 41 41 H 1.08995 * 109.47157 * 205.04470 * 17 16 15 42 42 H 1.09001 * 109.46674 * 325.04733 * 17 16 15 43 43 H 0.96997 * 119.99996 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.49843 * 58.58238 * 26 15 14 45 45 H 1.09000 * 109.50351 * 178.65307 * 26 15 14 46 46 H 1.08993 * 109.58528 * 6.60164 * 27 12 10 47 47 H 1.08994 * 109.70223 * 246.24426 * 27 12 10 48 48 H 1.09001 * 109.50982 * 50.75203 * 28 8 7 49 49 H 1.09004 * 109.51047 * 170.88267 * 28 8 7 50 50 H 1.08995 * 109.70946 * 44.40303 * 29 4 3 51 51 H 1.08997 * 109.75273 * 283.78304 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0866 0.0000 4 6 3.5362 0.7324 0.0005 5 7 3.5897 -0.6133 -0.0011 6 7 2.2675 -1.0663 0.0005 7 6 4.8197 -1.4052 -0.0042 8 6 5.9851 -0.5048 -0.4303 9 1 5.8837 -0.2550 -1.4865 10 6 7.2873 -1.2300 -0.2083 11 8 7.8232 -1.1950 0.8791 12 7 7.8564 -1.9175 -1.2183 13 6 7.1595 -2.0748 -2.5022 14 6 7.0940 -3.5657 -2.8482 15 6 8.5064 -4.1544 -2.8227 16 7 8.4506 -5.5727 -3.1852 17 6 7.6637 -6.5055 -2.3749 18 6 9.1342 -6.0266 -4.2815 19 1 10.0804 -5.5806 -4.5508 20 6 8.6113 -7.0599 -5.0468 21 7 7.4109 -7.5314 -4.7836 22 14 9.6111 -7.7814 -6.4501 23 1 10.9175 -7.0809 -6.5384 24 1 9.8401 -9.2276 -6.2023 25 1 8.8703 -7.6088 -7.7255 26 6 9.0958 -4.0100 -1.4178 27 6 9.1847 -2.5241 -1.0558 28 6 5.9683 0.7806 0.4021 29 6 4.7523 1.6265 0.0013 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5142 33 1 4.7203 -2.2318 -0.7077 34 1 5.0061 -1.7949 0.9966 35 1 7.7052 -1.5425 -3.2813 36 1 6.1492 -1.6737 -2.4218 37 1 6.6661 -3.6898 -3.8430 38 1 6.4715 -4.0818 -2.1173 39 1 9.1348 -3.6217 -3.5366 40 1 6.6254 -6.4881 -2.7064 41 1 8.0645 -7.5127 -2.4882 42 1 7.7155 -6.2096 -1.3271 43 1 7.0453 -8.2532 -5.3186 44 1 8.4546 -4.5216 -0.6999 45 1 10.0924 -4.4509 -1.3942 46 1 9.5103 -2.4189 -0.0210 47 1 9.8977 -2.0294 -1.7153 48 1 5.9040 0.5281 1.4606 49 1 6.8817 1.3461 0.2171 50 1 4.6139 2.4347 0.7193 51 1 4.9048 2.0418 -0.9949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985552988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:19 Heat of formation + Delta-G solvation = 70.973551 kcal Electronic energy + Delta-G solvation = -31546.265576 eV Core-core repulsion = 27482.789191 eV Total energy + Delta-G solvation = -4063.476385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.59232 -40.51566 -37.96186 -36.76460 -35.15978 -33.51409 -32.59359 -32.05366 -30.96919 -30.07514 -29.67278 -28.55419 -26.02753 -25.27618 -24.54978 -23.74622 -22.78513 -22.05794 -20.97087 -20.30158 -19.46376 -18.52825 -17.57391 -16.96175 -16.79403 -16.36706 -15.94561 -15.37499 -15.09894 -14.96093 -14.57681 -14.41258 -14.21920 -13.96491 -13.67021 -13.57313 -13.37205 -13.31770 -13.04968 -12.82491 -12.60978 -12.52664 -12.29764 -12.19668 -12.05112 -11.73971 -11.63034 -11.45620 -11.24361 -11.08428 -10.93030 -10.87301 -10.44117 -10.27615 -10.26292 -10.21151 -10.03551 -9.90786 -9.84961 -9.62689 -9.48654 -8.68001 -8.55507 -6.66147 -5.82211 -3.37241 1.39951 1.87537 2.45873 2.66225 2.86347 3.31394 3.39302 3.40703 3.62472 3.91952 4.02581 4.11735 4.41216 4.45879 4.54691 4.59682 4.83670 4.89207 4.94341 5.02737 5.12214 5.19050 5.28428 5.29502 5.32349 5.33299 5.39802 5.43225 5.52850 5.53574 5.60490 5.62268 5.67795 5.82205 5.90642 6.07694 6.13665 6.18872 6.26156 6.29342 6.41933 6.50709 6.54129 6.76270 6.90584 6.92919 7.28579 7.31146 7.62693 7.75141 7.92902 7.98157 8.41353 9.18332 9.78332 10.34117 11.23378 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.002569 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.290164 B =10897.306957 C =12196.374561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.215 3.785 3 N -0.539 5.539 4 C 0.277 3.723 5 N -0.373 5.373 6 N -0.310 5.310 7 C 0.141 3.859 8 C -0.127 4.127 9 H 0.108 0.892 10 C 0.526 3.474 11 O -0.538 6.538 12 N -0.599 5.599 13 C 0.103 3.897 14 C -0.145 4.145 15 C 0.179 3.821 16 N -0.592 5.592 17 C 0.161 3.839 18 C -0.262 4.262 19 H 0.063 0.937 20 C 0.011 3.989 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.289 1.289 26 C -0.147 4.147 27 C 0.115 3.885 28 C -0.108 4.108 29 C -0.040 4.040 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.018 0.982 41 H 0.047 0.953 42 H -0.005 1.005 43 H 0.253 0.747 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.108 0.892 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.199 18.319 8.899 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 N -0.268 5.268 4 C 0.001 3.999 5 N -0.163 5.163 6 N -0.139 5.139 7 C 0.019 3.981 8 C -0.149 4.149 9 H 0.126 0.874 10 C 0.312 3.688 11 O -0.415 6.415 12 N -0.332 5.332 13 C -0.020 4.020 14 C -0.185 4.185 15 C 0.071 3.929 16 N -0.314 5.314 17 C 0.017 3.983 18 C -0.392 4.392 19 H 0.081 0.919 20 C -0.189 4.189 21 N -0.544 5.544 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.216 1.216 26 C -0.187 4.187 27 C -0.008 4.008 28 C -0.147 4.147 29 C -0.080 4.080 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.037 0.963 41 H 0.066 0.934 42 H 0.014 0.986 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.086 0.914 48 H 0.104 0.896 49 H 0.112 0.888 50 H 0.127 0.873 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.329 17.654 9.378 20.968 hybrid contribution 0.556 -0.729 -1.027 1.377 sum -5.773 16.925 8.351 19.736 Atomic orbital electron populations 1.20076 0.83838 1.03938 1.03728 1.24438 0.98272 0.85500 0.98500 1.70168 0.99803 1.30862 1.25928 1.24301 0.95031 0.83981 0.96593 1.50111 1.05607 1.05814 1.54797 1.78003 0.86383 1.22450 1.27028 1.21672 0.78108 0.93514 1.04826 1.21766 0.92867 0.96769 1.03499 0.87415 1.19905 0.85684 0.79121 0.84124 1.90706 1.64496 1.62287 1.24026 1.48216 1.19432 1.51820 1.13712 1.21986 0.96518 0.99115 0.84359 1.22503 1.01408 0.92224 1.02399 1.20322 0.92794 0.86910 0.92896 1.43820 1.57218 1.00700 1.29618 1.20706 0.95195 0.93501 0.88925 1.19160 1.00056 1.17133 1.02824 0.91899 1.25312 0.95465 1.00458 0.97616 1.70012 1.15390 1.28333 1.40688 0.86231 0.79502 0.78791 0.82285 1.20191 1.21585 1.21568 1.22461 1.02348 0.93621 1.00279 1.21702 0.82403 0.94051 1.02624 1.21607 0.98427 0.93701 1.00934 1.20433 0.86635 0.95947 1.04960 0.89859 0.90018 0.89653 0.87732 0.88447 0.90937 0.90712 0.90310 0.92191 0.91830 0.96329 0.93396 0.98650 0.93669 0.91988 0.90773 0.89464 0.91425 0.89616 0.88824 0.87347 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.21 2.71 8.15 -156.43 -1.27 1.44 16 3 N -0.54 -6.94 11.18 -8.03 -0.09 -7.03 16 4 C 0.28 3.14 7.72 -155.78 -1.20 1.93 16 5 N -0.37 -4.60 4.04 -58.29 -0.24 -4.83 16 6 N -0.31 -4.37 12.74 32.50 0.41 -3.95 16 7 C 0.14 1.51 6.52 -3.99 -0.03 1.49 16 8 C -0.13 -1.16 1.73 -91.53 -0.16 -1.32 16 9 H 0.11 0.85 6.20 -51.93 -0.32 0.52 16 10 C 0.53 6.32 6.66 -10.99 -0.07 6.25 16 11 O -0.54 -8.07 15.85 5.56 0.09 -7.98 16 12 N -0.60 -7.36 2.97 -172.76 -0.51 -7.88 16 13 C 0.10 1.20 6.14 -3.71 -0.02 1.18 16 14 C -0.15 -2.32 5.34 -26.61 -0.14 -2.47 16 15 C 0.18 3.30 2.56 -67.89 -0.17 3.13 16 16 N -0.59 -13.95 2.77 -173.44 -0.48 -14.43 16 17 C 0.16 3.83 8.11 59.85 0.49 4.31 16 18 C -0.26 -6.86 9.45 -15.06 -0.14 -7.00 16 19 H 0.06 1.62 7.83 -52.48 -0.41 1.21 16 20 C 0.01 0.30 5.17 -17.43 -0.09 0.21 16 21 N -0.90 -25.51 11.10 55.49 0.62 -24.89 16 22 Si 0.90 21.12 29.56 -169.99 -5.02 16.10 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.15 -2.34 5.30 -26.61 -0.14 -2.48 16 27 C 0.11 1.51 6.44 -3.71 -0.02 1.48 16 28 C -0.11 -0.83 4.78 -26.42 -0.13 -0.96 16 29 C -0.04 -0.29 6.33 -27.53 -0.17 -0.46 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 1.14 7.84 -51.93 -0.41 0.73 16 34 H 0.10 1.08 8.12 -51.93 -0.42 0.66 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.73 5.29 -51.93 -0.27 0.45 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.06 1.02 7.72 -51.93 -0.40 0.62 16 39 H 0.06 1.19 7.89 -51.92 -0.41 0.78 16 40 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 41 H 0.05 1.24 7.24 -51.93 -0.38 0.86 16 42 H 0.00 -0.10 6.48 -51.93 -0.34 -0.44 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.06 1.06 6.76 -51.93 -0.35 0.71 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.09 1.19 7.00 -51.93 -0.36 0.82 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 49 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 50 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -33.09 396.37 -10.42 -43.50 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -8.26 Total: -1.21 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -2.91 Total: 6.63 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -0.29 Total: -63.01 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.09 Total: -7.98 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.09 -10.42 -43.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985552988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.478 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds