Wall clock time and date at job start Wed Apr 1 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30830 * 126.46232 * 2 1 4 4 N 1.28914 * 109.73960 * 179.97438 * 3 2 1 5 5 C 1.29842 * 109.47946 * 359.97438 * 4 3 2 6 6 N 1.34700 * 126.46213 * 179.97438 * 2 1 3 7 7 C 1.46243 * 128.85538 * 0.13931 * 6 2 1 8 8 C 1.53316 * 108.73194 * 162.86302 * 7 6 2 9 9 H 1.09009 * 109.44989 * 290.30436 * 8 7 6 10 10 C 1.50698 * 109.45447 * 170.35525 * 8 7 6 11 11 O 1.21279 * 119.99918 * 352.35950 * 10 8 7 12 12 N 1.34777 * 119.99913 * 172.36553 * 10 8 7 13 13 C 1.46930 * 120.63243 * 356.51603 * 12 10 8 14 14 C 1.53190 * 108.89319 * 233.67572 * 13 12 10 15 15 C 1.53040 * 109.31387 * 305.29314 * 14 13 12 16 16 N 1.46495 * 109.46608 * 181.38655 * 15 14 13 17 17 C 1.46506 * 119.99736 * 300.00242 * 16 15 14 18 18 C 1.36935 * 120.00229 * 119.99391 * 16 15 14 19 19 H 1.07997 * 120.00007 * 19.80854 * 18 16 15 20 20 C 1.38816 * 120.00009 * 199.80374 * 18 16 15 21 21 N 1.31621 * 120.00009 * 15.32610 * 20 18 16 22 22 Si 1.86797 * 120.00068 * 195.32212 * 20 18 16 23 23 H 1.48497 * 109.47132 * 60.00351 * 22 20 18 24 24 H 1.48500 * 109.47277 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47136 * 300.00573 * 22 20 18 26 26 C 1.53047 * 109.53809 * 61.36215 * 15 14 13 27 27 C 1.47204 * 120.81259 * 176.64975 * 12 10 8 28 28 C 1.53137 * 109.56770 * 50.32514 * 8 7 6 29 29 C 1.50801 * 128.52583 * 180.09628 * 5 4 3 30 30 H 1.08998 * 109.47352 * 270.02392 * 1 2 3 31 31 H 1.09001 * 109.47269 * 30.02993 * 1 2 3 32 32 H 1.09004 * 109.47338 * 150.02669 * 1 2 3 33 33 H 1.08996 * 109.57903 * 43.09854 * 7 6 2 34 34 H 1.09005 * 109.60946 * 282.64182 * 7 6 2 35 35 H 1.08995 * 109.59089 * 113.81283 * 13 12 10 36 36 H 1.09002 * 109.58451 * 353.52798 * 13 12 10 37 37 H 1.09005 * 109.49674 * 65.24150 * 14 13 12 38 38 H 1.08998 * 109.50383 * 185.33866 * 14 13 12 39 39 H 1.09002 * 109.45702 * 301.34827 * 15 14 13 40 40 H 1.08992 * 109.47518 * 94.86628 * 17 16 15 41 41 H 1.09002 * 109.46791 * 214.87384 * 17 16 15 42 42 H 1.09002 * 109.46663 * 334.86476 * 17 16 15 43 43 H 0.97001 * 120.00177 * 179.97438 * 21 20 18 44 44 H 1.08993 * 109.49728 * 58.59243 * 26 15 14 45 45 H 1.08998 * 109.49517 * 178.68995 * 26 15 14 46 46 H 1.08994 * 109.53720 * 6.54144 * 27 12 10 47 47 H 1.09004 * 109.67895 * 246.22997 * 27 12 10 48 48 H 1.09001 * 109.49925 * 50.51092 * 28 8 7 49 49 H 1.08996 * 109.50312 * 170.61369 * 28 8 7 50 50 H 1.08996 * 109.72695 * 44.44836 * 29 5 4 51 51 H 1.09000 * 109.72838 * 283.77016 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2845 1.0522 0.0000 4 7 3.5191 0.6813 0.0005 5 6 3.5816 -0.6157 0.0015 6 7 2.3075 -1.0833 0.0005 7 6 1.9368 -2.4980 -0.0017 8 6 3.1551 -3.3255 -0.4279 9 1 3.3621 -3.1495 -1.4836 10 6 2.8689 -4.7890 -0.2100 11 8 1.8583 -5.1298 0.3674 12 7 3.7362 -5.7190 -0.6565 13 6 4.9260 -5.3260 -1.4237 14 6 4.9489 -6.1097 -2.7397 15 6 4.8656 -7.6078 -2.4382 16 7 4.9205 -8.3621 -3.6929 17 6 3.8977 -8.1502 -4.7202 18 6 5.9278 -9.2649 -3.9055 19 1 6.4833 -9.6613 -3.0684 20 6 6.2349 -9.6709 -5.1970 21 7 5.7847 -8.9858 -6.2267 22 14 7.2871 -11.1893 -5.4734 23 1 6.6166 -12.3718 -4.8757 24 1 7.4688 -11.4070 -6.9311 25 1 8.6130 -10.9960 -4.8332 26 6 3.5504 -7.9125 -1.7173 27 6 3.5118 -7.1491 -0.3896 28 6 4.3718 -2.9140 0.4059 29 6 4.8051 -1.4971 0.0043 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3634 -0.8902 -0.5134 33 1 1.1203 -2.6606 -0.7051 34 1 1.6248 -2.7959 0.9994 35 1 5.8234 -5.5524 -0.8479 36 1 4.8877 -4.2574 -1.6354 37 1 4.0980 -5.8144 -3.3538 38 1 5.8749 -5.8971 -3.2739 39 1 5.7031 -7.8975 -1.8036 40 1 4.2562 -7.4189 -5.4445 41 1 3.6914 -9.0928 -5.2272 42 1 2.9845 -7.7815 -4.2531 43 1 5.9996 -9.2692 -7.1292 44 1 2.7128 -7.6002 -2.3410 45 1 3.4812 -8.9829 -1.5236 46 1 2.5379 -7.2837 0.0810 47 1 4.2922 -7.5261 0.2714 48 1 4.1100 -2.9295 1.4638 49 1 5.1905 -3.6099 0.2229 50 1 5.5304 -1.1174 0.7240 51 1 5.2483 -1.5146 -0.9913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985803442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:10 Heat of formation + Delta-G solvation = 65.375862 kcal Electronic energy + Delta-G solvation = -31618.751686 eV Core-core repulsion = 27555.032568 eV Total energy + Delta-G solvation = -4063.719119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.57778 -40.65449 -38.02230 -36.98639 -35.29026 -34.42766 -32.56597 -31.85150 -31.02786 -30.54921 -29.77421 -27.65198 -26.10861 -25.83157 -24.70248 -23.51764 -22.96591 -22.15407 -21.58347 -20.46141 -19.55881 -18.72521 -17.78209 -16.94764 -16.85695 -16.48840 -16.01003 -15.61198 -15.18541 -15.11903 -14.58215 -14.32922 -14.28414 -14.11382 -13.96368 -13.62682 -13.51711 -13.42199 -13.16953 -12.96610 -12.66656 -12.57378 -12.38778 -12.24331 -11.86999 -11.73762 -11.66300 -11.65920 -11.41738 -11.10171 -10.94240 -10.82386 -10.55311 -10.47359 -10.40323 -10.34157 -10.27858 -9.96011 -9.89415 -9.69855 -9.20986 -8.73299 -8.59014 -6.87323 -5.79687 -3.23187 1.55054 2.08096 2.33678 2.62739 2.82621 3.33276 3.39968 3.40187 3.71106 3.88715 3.96240 4.12303 4.17924 4.41819 4.48726 4.59436 4.66008 4.77141 4.87465 4.91475 5.06804 5.10711 5.13471 5.21000 5.21649 5.26178 5.31504 5.36805 5.37219 5.46204 5.52261 5.56881 5.59104 5.71293 5.75206 5.85159 5.93941 6.01706 6.11214 6.22290 6.35959 6.43981 6.58122 6.68121 6.84338 6.85275 7.25395 7.32059 7.63544 7.73492 7.91069 8.30898 8.51474 9.15806 9.80073 10.27829 11.25245 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.002281 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.703054 B =12273.880027 C =12582.967893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.179 3.821 3 N -0.301 5.301 4 N -0.291 5.291 5 C 0.173 3.827 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.124 4.124 9 H 0.111 0.889 10 C 0.527 3.473 11 O -0.547 6.547 12 N -0.598 5.598 13 C 0.102 3.898 14 C -0.147 4.147 15 C 0.180 3.820 16 N -0.596 5.596 17 C 0.164 3.836 18 C -0.257 4.257 19 H 0.069 0.931 20 C 0.001 3.999 21 N -0.907 5.907 22 Si 0.904 3.096 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.283 1.283 26 C -0.147 4.147 27 C 0.115 3.885 28 C -0.121 4.121 29 C -0.032 4.032 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.042 0.958 42 H -0.002 1.002 43 H 0.253 0.747 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.098 0.902 50 H 0.106 0.894 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.584 12.550 13.567 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 N -0.142 5.142 4 N -0.130 5.130 5 C -0.094 4.094 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.146 4.146 9 H 0.129 0.871 10 C 0.313 3.687 11 O -0.425 6.425 12 N -0.330 5.330 13 C -0.021 4.021 14 C -0.188 4.188 15 C 0.071 3.929 16 N -0.317 5.317 17 C 0.019 3.981 18 C -0.386 4.386 19 H 0.086 0.914 20 C -0.197 4.197 21 N -0.552 5.552 22 Si 0.734 3.266 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.210 1.210 26 C -0.187 4.187 27 C -0.007 4.007 28 C -0.159 4.159 29 C -0.071 4.071 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.016 0.984 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.116 0.884 50 H 0.124 0.876 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.674 13.739 13.643 20.481 hybrid contribution 0.207 -2.177 -0.527 2.250 sum -6.467 11.562 13.116 18.642 Atomic orbital electron populations 1.20227 0.83675 1.04618 1.04119 1.24673 0.97124 0.82716 1.04335 1.74485 0.96126 1.23670 1.19872 1.74048 1.12295 1.08028 1.18619 1.24713 0.87053 0.92583 1.05070 1.45996 1.07021 1.08460 1.54532 1.21768 0.97605 0.75279 1.05222 1.21613 0.96317 0.93156 1.03489 0.87081 1.19928 0.83045 0.86822 0.78866 1.90702 1.26506 1.82077 1.43206 1.48188 1.24381 1.07163 1.53300 1.22027 0.86996 0.99479 0.93565 1.22547 1.02984 0.98268 0.94979 1.20264 0.94555 0.89094 0.88947 1.43967 1.28221 1.45070 1.14464 1.20746 0.87188 1.00066 0.90086 1.19174 1.11342 1.16300 0.91794 0.91370 1.24949 0.99519 0.99409 0.95820 1.70078 1.48880 1.38418 0.97792 0.86350 0.80149 0.83311 0.76813 1.21132 1.21670 1.20965 1.22488 1.01054 1.00105 0.95078 1.21754 1.02471 0.78391 0.98095 1.21831 0.97047 0.96630 1.00425 1.20245 0.91227 0.90799 1.04830 0.89527 0.88630 0.90312 0.88042 0.87760 0.90884 0.90319 0.92139 0.90291 0.91843 0.95440 0.93913 0.98404 0.93689 0.91992 0.90661 0.89511 0.91378 0.90171 0.88378 0.87575 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.29 36.01 0.37 -0.07 16 2 C 0.18 1.94 8.07 -155.45 -1.25 0.69 16 3 N -0.30 -4.24 12.23 32.70 0.40 -3.84 16 4 N -0.29 -4.11 12.21 32.76 0.40 -3.71 16 5 C 0.17 1.90 7.75 -155.29 -1.20 0.70 16 6 N -0.47 -4.71 3.11 -110.87 -0.35 -5.05 16 7 C 0.12 1.04 5.56 -4.02 -0.02 1.02 16 8 C -0.12 -1.02 1.68 -91.54 -0.15 -1.17 16 9 H 0.11 0.87 7.10 -51.92 -0.37 0.50 16 10 C 0.53 5.87 6.99 -10.99 -0.08 5.79 16 11 O -0.55 -7.69 15.21 5.56 0.08 -7.60 16 12 N -0.60 -6.77 2.98 -172.54 -0.51 -7.28 16 13 C 0.10 1.05 4.90 -3.71 -0.02 1.04 16 14 C -0.15 -2.18 5.34 -26.61 -0.14 -2.33 16 15 C 0.18 3.16 2.55 -67.89 -0.17 2.99 16 16 N -0.60 -13.70 2.82 -173.43 -0.49 -14.19 16 17 C 0.16 3.81 8.04 59.85 0.48 4.29 16 18 C -0.26 -6.62 9.62 -15.06 -0.14 -6.77 16 19 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 20 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 21 N -0.91 -25.45 10.66 55.49 0.59 -24.85 16 22 Si 0.90 21.06 29.58 -169.99 -5.03 16.03 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.15 -2.25 5.32 -26.61 -0.14 -2.39 16 27 C 0.12 1.43 6.45 -3.56 -0.02 1.41 16 28 C -0.12 -0.80 4.81 -26.40 -0.13 -0.93 16 29 C -0.03 -0.22 6.34 -27.57 -0.17 -0.40 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.40 7.76 -51.93 -0.40 -0.01 16 33 H 0.10 0.78 7.84 -51.93 -0.41 0.37 16 34 H 0.10 0.89 7.68 -51.93 -0.40 0.50 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.63 5.07 -51.93 -0.26 0.37 16 37 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.12 7.84 -51.93 -0.41 0.72 16 40 H 0.03 0.69 7.43 -51.93 -0.39 0.31 16 41 H 0.04 1.09 7.17 -51.93 -0.37 0.72 16 42 H 0.00 -0.05 6.47 -51.93 -0.34 -0.39 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.09 1.13 7.02 -51.93 -0.36 0.76 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.56 8.12 -51.93 -0.42 0.13 16 49 H 0.10 0.55 6.06 -51.93 -0.31 0.24 16 50 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -33.37 390.11 -10.03 -43.40 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -8.12 Total: -2.60 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -2.89 Total: 3.82 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.04 Total: -58.92 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.08 Total: -7.60 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.37 -10.03 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985803442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.773 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds