Wall clock time and date at job start Wed Apr 1 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30830 * 126.46232 * 2 1 4 4 N 1.28914 * 109.73960 * 179.97438 * 3 2 1 5 5 C 1.29842 * 109.47946 * 359.97438 * 4 3 2 6 6 N 1.34700 * 126.46213 * 179.97438 * 2 1 3 7 7 C 1.46243 * 128.85538 * 0.13931 * 6 2 1 8 8 C 1.53316 * 108.73194 * 162.86302 * 7 6 2 9 9 H 1.09009 * 109.44989 * 290.30436 * 8 7 6 10 10 C 1.50698 * 109.45447 * 170.35525 * 8 7 6 11 11 O 1.21279 * 119.99918 * 352.35950 * 10 8 7 12 12 N 1.34777 * 119.99913 * 172.36553 * 10 8 7 13 13 C 1.46930 * 120.63243 * 356.51603 * 12 10 8 14 14 C 1.53190 * 108.89319 * 233.67572 * 13 12 10 15 15 C 1.53040 * 109.31387 * 305.29314 * 14 13 12 16 16 N 1.46495 * 109.46608 * 181.38655 * 15 14 13 17 17 C 1.46506 * 119.99736 * 300.00242 * 16 15 14 18 18 C 1.36935 * 120.00229 * 119.99391 * 16 15 14 19 19 H 1.07997 * 120.00007 * 19.80854 * 18 16 15 20 20 C 1.38816 * 120.00009 * 199.80374 * 18 16 15 21 21 N 1.31621 * 120.00009 * 15.32610 * 20 18 16 22 22 Si 1.86797 * 120.00068 * 195.32212 * 20 18 16 23 23 H 1.48497 * 109.47132 * 60.00351 * 22 20 18 24 24 H 1.48500 * 109.47277 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47136 * 300.00573 * 22 20 18 26 26 C 1.53047 * 109.53809 * 61.36215 * 15 14 13 27 27 C 1.47204 * 120.81259 * 176.64975 * 12 10 8 28 28 C 1.53137 * 109.56770 * 50.32514 * 8 7 6 29 29 C 1.50801 * 128.52583 * 180.09628 * 5 4 3 30 30 H 1.08998 * 109.47352 * 270.02392 * 1 2 3 31 31 H 1.09001 * 109.47269 * 30.02993 * 1 2 3 32 32 H 1.09004 * 109.47338 * 150.02669 * 1 2 3 33 33 H 1.08996 * 109.57903 * 43.09854 * 7 6 2 34 34 H 1.09005 * 109.60946 * 282.64182 * 7 6 2 35 35 H 1.08995 * 109.59089 * 113.81283 * 13 12 10 36 36 H 1.09002 * 109.58451 * 353.52798 * 13 12 10 37 37 H 1.09005 * 109.49674 * 65.24150 * 14 13 12 38 38 H 1.08998 * 109.50383 * 185.33866 * 14 13 12 39 39 H 1.09002 * 109.45702 * 301.34827 * 15 14 13 40 40 H 1.08992 * 109.47518 * 94.86628 * 17 16 15 41 41 H 1.09002 * 109.46791 * 214.87384 * 17 16 15 42 42 H 1.09002 * 109.46663 * 334.86476 * 17 16 15 43 43 H 0.97001 * 120.00177 * 179.97438 * 21 20 18 44 44 H 1.08993 * 109.49728 * 58.59243 * 26 15 14 45 45 H 1.08998 * 109.49517 * 178.68995 * 26 15 14 46 46 H 1.08994 * 109.53720 * 6.54144 * 27 12 10 47 47 H 1.09004 * 109.67895 * 246.22997 * 27 12 10 48 48 H 1.09001 * 109.49925 * 50.51092 * 28 8 7 49 49 H 1.08996 * 109.50312 * 170.61369 * 28 8 7 50 50 H 1.08996 * 109.72695 * 44.44836 * 29 5 4 51 51 H 1.09000 * 109.72838 * 283.77016 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2845 1.0522 0.0000 4 7 3.5191 0.6813 0.0005 5 6 3.5816 -0.6157 0.0015 6 7 2.3075 -1.0833 0.0005 7 6 1.9368 -2.4980 -0.0017 8 6 3.1551 -3.3255 -0.4279 9 1 3.3621 -3.1495 -1.4836 10 6 2.8689 -4.7890 -0.2100 11 8 1.8583 -5.1298 0.3674 12 7 3.7362 -5.7190 -0.6565 13 6 4.9260 -5.3260 -1.4237 14 6 4.9489 -6.1097 -2.7397 15 6 4.8656 -7.6078 -2.4382 16 7 4.9205 -8.3621 -3.6929 17 6 3.8977 -8.1502 -4.7202 18 6 5.9278 -9.2649 -3.9055 19 1 6.4833 -9.6613 -3.0684 20 6 6.2349 -9.6709 -5.1970 21 7 5.7847 -8.9858 -6.2267 22 14 7.2871 -11.1893 -5.4734 23 1 6.6166 -12.3718 -4.8757 24 1 7.4688 -11.4070 -6.9311 25 1 8.6130 -10.9960 -4.8332 26 6 3.5504 -7.9125 -1.7173 27 6 3.5118 -7.1491 -0.3896 28 6 4.3718 -2.9140 0.4059 29 6 4.8051 -1.4971 0.0043 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8897 -0.5143 32 1 -0.3634 -0.8902 -0.5134 33 1 1.1203 -2.6606 -0.7051 34 1 1.6248 -2.7959 0.9994 35 1 5.8234 -5.5524 -0.8479 36 1 4.8877 -4.2574 -1.6354 37 1 4.0980 -5.8144 -3.3538 38 1 5.8749 -5.8971 -3.2739 39 1 5.7031 -7.8975 -1.8036 40 1 4.2562 -7.4189 -5.4445 41 1 3.6914 -9.0928 -5.2272 42 1 2.9845 -7.7815 -4.2531 43 1 5.9996 -9.2692 -7.1292 44 1 2.7128 -7.6002 -2.3410 45 1 3.4812 -8.9829 -1.5236 46 1 2.5379 -7.2837 0.0810 47 1 4.2922 -7.5261 0.2714 48 1 4.1100 -2.9295 1.4638 49 1 5.1905 -3.6099 0.2229 50 1 5.5304 -1.1174 0.7240 51 1 5.2483 -1.5146 -0.9913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985803442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:09 Heat of formation + Delta-G solvation = 46.274754 kcal Electronic energy + Delta-G solvation = -31619.579973 eV Core-core repulsion = 27555.032568 eV Total energy + Delta-G solvation = -4064.547405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -44.37462 -41.56452 -39.20083 -37.81914 -36.75255 -35.17657 -33.97652 -32.87948 -31.86498 -31.52258 -31.17566 -28.34842 -28.03106 -26.88289 -25.75047 -24.38609 -24.05314 -23.47431 -22.38018 -21.47122 -20.50188 -19.74947 -18.75432 -18.64483 -17.68054 -17.37843 -16.93784 -16.87565 -16.42626 -15.92352 -15.70917 -15.28285 -15.20089 -15.10676 -14.95780 -14.89774 -14.70282 -14.44732 -14.04846 -13.88001 -13.71225 -13.46886 -13.24821 -13.18379 -13.12021 -12.99280 -12.77847 -12.63944 -12.57067 -12.36265 -12.24642 -12.21532 -12.11789 -11.96692 -11.79042 -11.60636 -11.37643 -11.24000 -11.12414 -10.81851 -10.58068 -10.02680 -9.68945 -8.77852 -7.80243 -5.24284 0.79622 1.33552 1.47854 1.49383 1.50686 1.56273 1.77361 1.96545 2.52755 3.05809 3.17316 3.27925 3.33281 3.51770 3.54194 3.64972 3.79800 3.93017 3.97106 4.08541 4.14601 4.20088 4.22678 4.31373 4.34752 4.42113 4.53408 4.57959 4.63004 4.65132 4.72487 4.80413 4.83841 4.85628 4.86810 4.91210 4.96050 5.00922 5.02128 5.05841 5.12776 5.23032 5.26984 5.38774 5.52130 5.59836 5.68590 5.73593 5.87705 6.33698 6.36917 7.03146 7.17622 7.67481 7.92099 8.34998 9.23039 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.002281 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.703054 B =12273.880027 C =12582.967893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.179 3.821 3 N -0.347 5.347 4 N -0.336 5.336 5 C 0.175 3.825 6 N -0.469 5.469 7 C 0.126 3.874 8 C -0.117 4.117 9 H 0.122 0.878 10 C 0.531 3.469 11 O -0.576 6.576 12 N -0.600 5.600 13 C 0.112 3.888 14 C -0.138 4.138 15 C 0.172 3.828 16 N -0.612 5.612 17 C 0.183 3.817 18 C -0.257 4.257 19 H 0.075 0.925 20 C -0.056 4.056 21 N -0.939 5.939 22 Si 0.963 3.037 23 H -0.282 1.282 24 H -0.300 1.300 25 H -0.273 1.273 26 C -0.134 4.134 27 C 0.124 3.876 28 C -0.113 4.113 29 C -0.029 4.029 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.001 0.999 41 H 0.010 0.990 42 H 0.023 0.977 43 H 0.245 0.755 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.117 0.883 50 H 0.119 0.881 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 12.628 15.410 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.187 5.187 4 N -0.174 5.174 5 C -0.094 4.094 6 N -0.160 5.160 7 C 0.003 3.997 8 C -0.139 4.139 9 H 0.140 0.860 10 C 0.319 3.681 11 O -0.456 6.456 12 N -0.331 5.331 13 C -0.011 4.011 14 C -0.178 4.178 15 C 0.066 3.934 16 N -0.334 5.334 17 C 0.038 3.962 18 C -0.387 4.387 19 H 0.093 0.907 20 C -0.251 4.251 21 N -0.587 5.587 22 Si 0.792 3.208 23 H -0.209 1.209 24 H -0.226 1.226 25 H -0.199 1.199 26 C -0.175 4.175 27 C 0.001 3.999 28 C -0.151 4.151 29 C -0.068 4.068 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.020 0.980 41 H 0.029 0.971 42 H 0.042 0.958 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.098 0.902 49 H 0.135 0.865 50 H 0.138 0.862 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.195 13.842 15.535 21.710 hybrid contribution -0.009 -2.213 -1.038 2.444 sum -6.205 11.629 14.498 19.594 Atomic orbital electron populations 1.20424 0.81031 1.05738 1.05374 1.25372 0.98589 0.82337 1.02617 1.74386 0.96721 1.25512 1.22059 1.73943 1.12776 1.09951 1.20751 1.25394 0.88443 0.92246 1.03337 1.46110 1.06739 1.08859 1.54306 1.21829 0.98020 0.74327 1.05478 1.21585 0.96980 0.90881 1.04426 0.86049 1.20300 0.82179 0.87714 0.77932 1.90701 1.27681 1.82711 1.44490 1.48208 1.24781 1.06729 1.53380 1.22055 0.87479 1.00426 0.91113 1.22329 1.01550 0.96659 0.97312 1.20541 0.95807 0.90350 0.86720 1.44207 1.27504 1.45843 1.15870 1.20392 0.88299 0.97608 0.89894 1.19544 1.10986 1.16300 0.91840 0.90741 1.25664 1.01493 1.02038 0.95889 1.70239 1.50842 1.39894 0.97693 0.85395 0.79099 0.80304 0.75988 1.20865 1.22630 1.19914 1.22286 0.98858 1.00083 0.96226 1.21599 1.03111 0.78924 0.96274 1.21822 0.96703 0.96530 1.00039 1.20448 0.89917 0.90166 1.06244 0.88092 0.88129 0.88535 0.87261 0.87842 0.88503 0.87171 0.93577 0.91854 0.91600 0.98050 0.97121 0.95846 0.94537 0.93528 0.91628 0.89872 0.89424 0.90223 0.86498 0.86244 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.29 71.24 0.73 -0.03 16 2 C 0.18 3.70 8.07 138.14 1.11 4.82 16 3 N -0.35 -9.76 12.23 -50.46 -0.62 -10.37 16 4 N -0.34 -9.37 12.21 -50.27 -0.61 -9.99 16 5 C 0.17 3.52 7.75 138.13 1.07 4.60 16 6 N -0.47 -8.56 3.11 -504.69 -1.57 -10.13 16 7 C 0.13 1.79 5.56 86.53 0.48 2.27 16 8 C -0.12 -1.52 1.68 -11.39 -0.02 -1.54 16 9 H 0.12 1.40 7.10 -2.38 -0.02 1.38 16 10 C 0.53 10.10 6.99 87.66 0.61 10.72 16 11 O -0.58 -14.77 15.21 -3.03 -0.05 -14.81 16 12 N -0.60 -11.49 2.98 -818.19 -2.44 -13.93 16 13 C 0.11 1.85 4.90 86.36 0.42 2.28 16 14 C -0.14 -3.83 5.34 30.67 0.16 -3.66 16 15 C 0.17 5.81 2.55 45.02 0.11 5.93 16 16 N -0.61 -28.12 2.82 -702.62 -1.98 -30.10 16 17 C 0.18 8.71 8.04 127.77 1.03 9.73 16 18 C -0.26 -13.20 9.62 84.03 0.81 -12.39 16 19 H 0.07 3.66 7.81 -2.91 -0.02 3.64 16 20 C -0.06 -3.02 5.06 84.86 0.43 -2.60 16 21 N -0.94 -54.08 10.66 21.65 0.23 -53.85 16 22 Si 0.96 43.58 29.58 68.60 2.03 45.61 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 C -0.13 -3.91 5.32 30.68 0.16 -3.74 16 27 C 0.12 2.74 6.45 86.31 0.56 3.29 16 28 C -0.11 -1.04 4.81 30.81 0.15 -0.90 16 29 C -0.03 -0.31 6.34 30.05 0.19 -0.12 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 0.75 7.76 -2.38 -0.02 0.73 16 33 H 0.11 1.39 7.84 -2.39 -0.02 1.37 16 34 H 0.10 1.53 7.68 -2.38 -0.02 1.51 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.11 1.21 5.07 -2.39 -0.01 1.20 16 37 H 0.05 1.40 7.72 -2.38 -0.02 1.39 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.07 2.19 7.84 -2.39 -0.02 2.17 16 40 H 0.00 0.06 7.43 -2.39 -0.02 0.05 16 41 H 0.01 0.54 7.17 -2.39 -0.02 0.52 16 42 H 0.02 0.96 6.47 -2.39 -0.02 0.94 16 43 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 44 H 0.05 1.49 6.72 -2.39 -0.02 1.47 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.08 1.97 7.02 -2.39 -0.02 1.95 16 47 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 48 H 0.08 0.81 8.12 -2.39 -0.02 0.79 16 49 H 0.12 0.70 6.06 -2.39 -0.01 0.68 16 50 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -75.32 390.11 3.94 -71.38 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 0.93 Total: 7.54 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 8.02 Total: 18.65 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -6.99 Total: -128.37 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.05 Total: -14.81 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -75.32 3.94 -71.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985803442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.658 kcal (2) G-P(sol) polarization free energy of solvation -75.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds