Wall clock time and date at job start Wed Apr 1 2020 05:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36587 * 126.58404 * 2 1 4 4 C 1.47527 * 125.76938 * 359.97438 * 3 2 1 5 5 O 1.21595 * 119.99886 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99984 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99758 * 179.97438 * 6 4 3 8 8 C 1.53581 * 112.24333 * 300.34974 * 7 6 4 9 9 C 1.54177 * 106.69686 * 237.98265 * 8 7 6 10 10 C 1.54750 * 104.36806 * 335.86883 * 9 8 7 11 11 C 1.54769 * 103.21220 * 37.32715 * 10 9 8 12 12 H 1.09007 * 111.86857 * 84.92727 * 11 10 9 13 13 N 1.46982 * 109.48852 * 209.44671 * 11 10 9 14 14 C 1.36936 * 125.58132 * 294.54423 * 13 11 10 15 15 H 1.07991 * 120.00126 * 359.97438 * 14 13 11 16 16 C 1.38816 * 119.99743 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00184 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99759 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47241 * 89.99628 * 18 16 14 20 20 H 1.48500 * 109.46905 * 209.99501 * 18 16 14 21 21 H 1.48495 * 109.46930 * 329.99554 * 18 16 14 22 22 C 1.47373 * 108.83830 * 114.50866 * 13 11 10 23 23 C 1.54914 * 112.33489 * 64.36277 * 7 6 4 24 24 N 1.34399 * 108.46491 * 179.97438 * 3 2 1 25 25 N 1.28767 * 109.52059 * 0.02562 * 24 3 2 26 26 N 1.34814 * 126.57759 * 180.02562 * 2 1 3 27 27 C 1.46498 * 126.59661 * 359.74170 * 26 2 1 28 28 C 1.52995 * 109.47493 * 119.99835 * 27 26 2 29 29 C 1.53005 * 109.47096 * 239.99958 * 27 26 2 30 30 H 1.08998 * 109.47395 * 270.00010 * 1 2 3 31 31 H 1.09011 * 109.47084 * 29.99992 * 1 2 3 32 32 H 1.09003 * 109.47405 * 149.99278 * 1 2 3 33 33 H 0.97003 * 120.00317 * 359.97438 * 6 4 3 34 34 H 1.08997 * 110.01886 * 358.13042 * 8 7 6 35 35 H 1.09003 * 110.01859 * 119.52368 * 8 7 6 36 36 H 1.09007 * 110.79918 * 216.92400 * 9 8 7 37 37 H 1.09001 * 110.09889 * 94.46363 * 9 8 7 38 38 H 1.09006 * 110.67007 * 278.90093 * 10 9 8 39 39 H 1.09001 * 110.67447 * 155.76228 * 10 9 8 40 40 H 0.97001 * 120.00021 * 180.02562 * 17 16 14 41 41 H 1.08997 * 110.36872 * 94.14845 * 22 13 11 42 42 H 1.09001 * 110.36831 * 216.47740 * 22 13 11 43 43 H 1.08999 * 110.96717 * 204.33161 * 23 7 6 44 44 H 1.09007 * 110.96555 * 328.09109 * 23 7 6 45 45 H 1.08999 * 109.47005 * 359.97438 * 27 26 2 46 46 H 1.08999 * 109.47428 * 59.99734 * 28 27 26 47 47 H 1.09001 * 109.47329 * 180.02562 * 28 27 26 48 48 H 1.09002 * 109.47134 * 299.99807 * 28 27 26 49 49 H 1.09000 * 109.46765 * 59.99755 * 29 27 26 50 50 H 1.09001 * 109.46811 * 179.97438 * 29 27 26 51 51 H 1.08999 * 109.46664 * 299.99555 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8738 2.5026 -0.0005 5 8 0.6860 2.7627 -0.0015 6 7 2.7818 3.4986 0.0000 7 6 2.3376 4.8947 -0.0011 8 6 1.4782 5.2304 -1.2289 9 6 2.1835 6.3906 -1.9593 10 6 3.0274 7.0798 -0.8604 11 6 3.5249 5.8933 -0.0002 12 1 4.4318 5.4476 -0.4090 13 7 3.7132 6.3389 1.3878 14 6 4.6375 7.2559 1.8117 15 1 5.3066 7.7168 1.1003 16 6 4.7152 7.5924 3.1562 17 7 3.9000 7.0304 4.0234 18 14 5.9756 8.8440 3.7345 19 1 5.3819 10.2042 3.6838 20 1 6.3794 8.5318 5.1290 21 1 7.1675 8.7909 2.8504 22 6 2.7438 5.6377 2.2483 23 6 1.5669 5.2683 1.2898 24 7 3.5983 0.6788 0.0006 25 7 3.6298 -0.6085 0.0004 26 7 2.3103 -1.0826 -0.0005 27 6 1.8863 -2.4849 0.0042 28 6 2.4244 -3.1847 -1.2454 29 6 2.4336 -3.1791 1.2531 30 1 -0.3634 0.0000 1.0276 31 1 -0.3634 0.8901 -0.5139 32 1 -0.3634 -0.8899 -0.5139 33 1 3.7294 3.2911 0.0012 34 1 1.3980 4.3584 -1.8779 35 1 0.4863 5.5535 -0.9130 36 1 1.4545 7.0871 -2.3738 37 1 2.8280 6.0007 -2.7471 38 1 2.4094 7.7532 -0.2663 39 1 3.8686 7.6155 -1.3004 40 1 3.9541 7.2659 4.9629 41 1 3.1952 4.7435 2.6780 42 1 2.3879 6.3005 3.0371 43 1 0.8983 6.1112 1.1147 44 1 1.0174 4.4106 1.6780 45 1 0.7975 -2.5352 0.0087 46 1 3.5132 -3.1344 -1.2496 47 1 2.1085 -4.2279 -1.2421 48 1 2.0345 -2.6902 -2.1351 49 1 2.0501 -2.6805 2.1433 50 1 2.1177 -4.2223 1.2567 51 1 3.5224 -3.1288 1.2489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992388158.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:25 Heat of formation + Delta-G solvation = 80.102254 kcal Electronic energy + Delta-G solvation = -31938.367947 eV Core-core repulsion = 27875.287413 eV Total energy + Delta-G solvation = -4063.080534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.32944 -39.95691 -37.92390 -36.64753 -34.20675 -33.52603 -32.96195 -31.45414 -30.98245 -29.61353 -27.93632 -27.84066 -26.66886 -25.87693 -24.13246 -23.80236 -23.10893 -20.89410 -20.47211 -19.94201 -19.40255 -18.62249 -17.60698 -16.95520 -16.51897 -16.26159 -15.53567 -14.97597 -14.89244 -14.51595 -14.49366 -14.16577 -13.96436 -13.60554 -13.42043 -13.36922 -13.23370 -13.07618 -12.77336 -12.70901 -12.61850 -12.14291 -12.05532 -12.01919 -11.74696 -11.65997 -11.60285 -11.13376 -11.06419 -10.92200 -10.80346 -10.63298 -10.47442 -10.29364 -10.10621 -10.02006 -9.89290 -9.71181 -9.56267 -9.36706 -9.13972 -8.60086 -8.43324 -6.79022 -5.58338 -3.01265 1.08133 1.81619 1.86200 3.42887 3.44463 3.48906 3.50735 3.54148 3.94534 4.10737 4.29586 4.40731 4.49555 4.53171 4.72693 4.88155 4.98356 5.00781 5.09979 5.18594 5.22520 5.23542 5.31165 5.38667 5.47848 5.57999 5.61771 5.62757 5.72796 5.75040 5.86650 5.93842 5.95335 6.07009 6.16003 6.22171 6.33391 6.37011 6.42522 6.46606 6.60864 6.65746 6.83386 6.85321 7.05340 7.19775 7.62290 7.70930 7.80288 7.93562 8.06232 8.42808 8.53875 9.27786 9.88795 10.53331 11.44127 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.002860 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.737772 B = 9788.517983 C =10756.006295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.119 3.881 3 C -0.100 4.100 4 C 0.604 3.396 5 O -0.538 6.538 6 N -0.687 5.687 7 C 0.161 3.839 8 C -0.109 4.109 9 C -0.124 4.124 10 C -0.128 4.128 11 C 0.161 3.839 12 H 0.046 0.954 13 N -0.595 5.595 14 C -0.218 4.218 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.921 5.921 18 Si 0.913 3.087 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.153 3.847 23 C -0.141 4.141 24 N -0.202 5.202 25 N -0.068 5.068 26 N -0.360 5.360 27 C 0.144 3.856 28 C -0.163 4.163 29 C -0.163 4.163 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.407 0.593 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.251 0.749 41 H 0.012 0.988 42 H 0.107 0.893 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.081 0.919 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.510 -19.715 -10.846 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.019 4.019 3 C -0.240 4.240 4 C 0.388 3.612 5 O -0.415 6.415 6 N -0.336 5.336 7 C 0.075 3.925 8 C -0.148 4.148 9 C -0.163 4.163 10 C -0.169 4.169 11 C 0.053 3.947 12 H 0.064 0.936 13 N -0.319 5.319 14 C -0.346 4.346 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.569 5.569 18 Si 0.743 3.257 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C 0.028 3.972 23 C -0.181 4.181 24 N -0.075 5.075 25 N -0.047 5.047 26 N -0.147 5.147 27 C 0.043 3.957 28 C -0.220 4.220 29 C -0.221 4.221 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.242 0.758 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.030 0.970 42 H 0.125 0.875 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.126 0.874 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.100 0.900 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.766 -19.849 -10.611 23.809 hybrid contribution 0.266 0.478 0.399 0.677 sum -7.500 -19.371 -10.212 23.146 Atomic orbital electron populations 1.20708 0.84869 1.05132 1.04623 1.21895 0.96169 0.86383 0.97415 1.21358 0.88936 0.95677 1.18026 1.16659 0.85754 0.82215 0.76528 1.90730 1.15788 1.83487 1.51512 1.45706 1.09909 1.05227 1.72773 1.21691 0.95667 0.79050 0.96107 1.22238 0.98808 0.97871 0.95918 1.22349 0.98817 0.97126 0.97968 1.22907 0.99007 0.98633 0.96326 1.21792 0.93469 0.91507 0.87919 0.93621 1.44502 1.39625 1.47270 1.00525 1.19038 1.09415 1.14133 0.92011 0.90521 1.24774 0.99690 1.00341 0.95862 1.69805 1.39504 1.45746 1.01881 0.86099 0.80720 0.80970 0.77871 1.21682 1.21795 1.20796 1.22229 0.86139 0.95769 0.93045 1.23550 0.98722 1.00285 0.95501 1.74651 1.19151 1.04060 1.09613 1.81916 0.96236 1.03375 1.23176 1.50614 1.06394 1.07099 1.50597 1.21609 1.00390 0.75464 0.98243 1.22157 1.03298 1.00760 0.95825 1.22160 1.03274 1.00783 0.95873 0.89104 0.86808 0.91076 0.75769 0.92161 0.91202 0.92217 0.92451 0.90738 0.92322 0.93830 0.97014 0.87550 0.91181 0.91682 0.87384 0.90668 0.89998 0.91764 0.91641 0.89994 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 9.41 36.00 0.34 -0.50 16 2 C 0.12 1.45 7.02 -81.88 -0.57 0.87 16 3 C -0.10 -1.55 6.99 -83.55 -0.58 -2.13 16 4 C 0.60 10.28 6.97 -12.47 -0.09 10.19 16 5 O -0.54 -9.55 12.59 5.28 0.07 -9.49 16 6 N -0.69 -12.19 5.23 -46.38 -0.24 -12.43 16 7 C 0.16 3.01 0.71 -129.37 -0.09 2.91 16 8 C -0.11 -1.81 5.25 -25.81 -0.14 -1.94 16 9 C -0.12 -1.90 6.82 -25.19 -0.17 -2.07 16 10 C -0.13 -2.37 6.26 -24.88 -0.16 -2.53 16 11 C 0.16 3.34 3.60 -65.60 -0.24 3.11 16 12 H 0.05 0.95 7.99 -51.92 -0.42 0.54 16 13 N -0.60 -15.01 3.07 -160.27 -0.49 -15.50 16 14 C -0.22 -5.98 10.03 -15.06 -0.15 -6.14 16 15 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 16 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 17 N -0.92 -27.06 10.07 55.49 0.56 -26.50 16 18 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.15 3.82 5.96 -1.84 -0.01 3.81 16 23 C -0.14 -2.93 5.85 -23.99 -0.14 -3.07 16 24 N -0.20 -3.26 12.04 32.84 0.40 -2.87 16 25 N -0.07 -0.97 13.67 60.35 0.82 -0.15 16 26 N -0.36 -3.96 3.28 -50.41 -0.17 -4.12 16 27 C 0.14 0.95 3.68 -67.93 -0.25 0.70 16 28 C -0.16 -0.89 9.47 37.15 0.35 -0.54 16 29 C -0.16 -0.97 9.46 37.16 0.35 -0.62 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.11 1.20 6.43 -51.92 -0.33 0.86 16 32 H 0.07 0.40 7.19 -51.93 -0.37 0.03 16 33 H 0.41 7.18 8.19 -40.82 -0.33 6.84 16 34 H 0.06 0.98 7.40 -51.93 -0.38 0.59 16 35 H 0.07 1.16 7.41 -51.93 -0.38 0.78 16 36 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.50 8.11 -51.93 -0.42 1.08 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.11 2.99 5.83 -51.93 -0.30 2.68 16 43 H 0.07 1.43 7.65 -51.93 -0.40 1.03 16 44 H 0.06 1.35 6.82 -51.93 -0.35 1.00 16 45 H 0.11 0.45 6.79 -51.93 -0.35 0.10 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 51 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -32.43 399.29 -7.95 -40.38 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.25 Total: 5.77 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -1.64 Total: 1.64 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.88 Total: -61.57 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.43 -7.95 -40.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992388158.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.486 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds