Wall clock time and date at job start Wed Apr 1 2020 05:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36587 * 126.58404 * 2 1 4 4 C 1.47527 * 125.76938 * 359.97438 * 3 2 1 5 5 O 1.21595 * 119.99886 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99984 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99758 * 179.97438 * 6 4 3 8 8 C 1.53581 * 112.24333 * 300.34974 * 7 6 4 9 9 C 1.54177 * 106.69686 * 237.98265 * 8 7 6 10 10 C 1.54750 * 104.36806 * 335.86883 * 9 8 7 11 11 C 1.54769 * 103.21220 * 37.32715 * 10 9 8 12 12 H 1.09007 * 111.86857 * 84.92727 * 11 10 9 13 13 N 1.46982 * 109.48852 * 209.44671 * 11 10 9 14 14 C 1.36936 * 125.58132 * 294.54423 * 13 11 10 15 15 H 1.07991 * 120.00126 * 359.97438 * 14 13 11 16 16 C 1.38816 * 119.99743 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00184 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99759 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47241 * 89.99628 * 18 16 14 20 20 H 1.48500 * 109.46905 * 209.99501 * 18 16 14 21 21 H 1.48495 * 109.46930 * 329.99554 * 18 16 14 22 22 C 1.47373 * 108.83830 * 114.50866 * 13 11 10 23 23 C 1.54914 * 112.33489 * 64.36277 * 7 6 4 24 24 N 1.34399 * 108.46491 * 179.97438 * 3 2 1 25 25 N 1.28767 * 109.52059 * 0.02562 * 24 3 2 26 26 N 1.34814 * 126.57759 * 180.02562 * 2 1 3 27 27 C 1.46498 * 126.59661 * 359.74170 * 26 2 1 28 28 C 1.52995 * 109.47493 * 119.99835 * 27 26 2 29 29 C 1.53005 * 109.47096 * 239.99958 * 27 26 2 30 30 H 1.08998 * 109.47395 * 270.00010 * 1 2 3 31 31 H 1.09011 * 109.47084 * 29.99992 * 1 2 3 32 32 H 1.09003 * 109.47405 * 149.99278 * 1 2 3 33 33 H 0.97003 * 120.00317 * 359.97438 * 6 4 3 34 34 H 1.08997 * 110.01886 * 358.13042 * 8 7 6 35 35 H 1.09003 * 110.01859 * 119.52368 * 8 7 6 36 36 H 1.09007 * 110.79918 * 216.92400 * 9 8 7 37 37 H 1.09001 * 110.09889 * 94.46363 * 9 8 7 38 38 H 1.09006 * 110.67007 * 278.90093 * 10 9 8 39 39 H 1.09001 * 110.67447 * 155.76228 * 10 9 8 40 40 H 0.97001 * 120.00021 * 180.02562 * 17 16 14 41 41 H 1.08997 * 110.36872 * 94.14845 * 22 13 11 42 42 H 1.09001 * 110.36831 * 216.47740 * 22 13 11 43 43 H 1.08999 * 110.96717 * 204.33161 * 23 7 6 44 44 H 1.09007 * 110.96555 * 328.09109 * 23 7 6 45 45 H 1.08999 * 109.47005 * 359.97438 * 27 26 2 46 46 H 1.08999 * 109.47428 * 59.99734 * 28 27 26 47 47 H 1.09001 * 109.47329 * 180.02562 * 28 27 26 48 48 H 1.09002 * 109.47134 * 299.99807 * 28 27 26 49 49 H 1.09000 * 109.46765 * 59.99755 * 29 27 26 50 50 H 1.09001 * 109.46811 * 179.97438 * 29 27 26 51 51 H 1.08999 * 109.46664 * 299.99555 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0968 0.0000 4 6 1.8738 2.5026 -0.0005 5 8 0.6860 2.7627 -0.0015 6 7 2.7818 3.4986 0.0000 7 6 2.3376 4.8947 -0.0011 8 6 1.4782 5.2304 -1.2289 9 6 2.1835 6.3906 -1.9593 10 6 3.0274 7.0798 -0.8604 11 6 3.5249 5.8933 -0.0002 12 1 4.4318 5.4476 -0.4090 13 7 3.7132 6.3389 1.3878 14 6 4.6375 7.2559 1.8117 15 1 5.3066 7.7168 1.1003 16 6 4.7152 7.5924 3.1562 17 7 3.9000 7.0304 4.0234 18 14 5.9756 8.8440 3.7345 19 1 5.3819 10.2042 3.6838 20 1 6.3794 8.5318 5.1290 21 1 7.1675 8.7909 2.8504 22 6 2.7438 5.6377 2.2483 23 6 1.5669 5.2683 1.2898 24 7 3.5983 0.6788 0.0006 25 7 3.6298 -0.6085 0.0004 26 7 2.3103 -1.0826 -0.0005 27 6 1.8863 -2.4849 0.0042 28 6 2.4244 -3.1847 -1.2454 29 6 2.4336 -3.1791 1.2531 30 1 -0.3634 0.0000 1.0276 31 1 -0.3634 0.8901 -0.5139 32 1 -0.3634 -0.8899 -0.5139 33 1 3.7294 3.2911 0.0012 34 1 1.3980 4.3584 -1.8779 35 1 0.4863 5.5535 -0.9130 36 1 1.4545 7.0871 -2.3738 37 1 2.8280 6.0007 -2.7471 38 1 2.4094 7.7532 -0.2663 39 1 3.8686 7.6155 -1.3004 40 1 3.9541 7.2659 4.9629 41 1 3.1952 4.7435 2.6780 42 1 2.3879 6.3005 3.0371 43 1 0.8983 6.1112 1.1147 44 1 1.0174 4.4106 1.6780 45 1 0.7975 -2.5352 0.0087 46 1 3.5132 -3.1344 -1.2496 47 1 2.1085 -4.2279 -1.2421 48 1 2.0345 -2.6902 -2.1351 49 1 2.0501 -2.6805 2.1433 50 1 2.1177 -4.2223 1.2567 51 1 3.5224 -3.1288 1.2489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992388158.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:24 Heat of formation + Delta-G solvation = 58.851772 kcal Electronic energy + Delta-G solvation = -31939.289437 eV Core-core repulsion = 27875.287413 eV Total energy + Delta-G solvation = -4064.002025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.33927 -41.45042 -39.37360 -37.36600 -36.03539 -34.80370 -33.94228 -33.29813 -32.12119 -31.22311 -28.91301 -28.41429 -28.28338 -27.38321 -25.73576 -25.02495 -24.23305 -22.43375 -21.57122 -21.33389 -20.76457 -20.06766 -18.87488 -18.67487 -17.62515 -17.24215 -16.94159 -16.80297 -15.99236 -15.98641 -15.54535 -15.35620 -15.17217 -15.01823 -14.70227 -14.44965 -14.23642 -14.00372 -13.96413 -13.90330 -13.48179 -13.23765 -13.21105 -13.15336 -12.96009 -12.90055 -12.76901 -12.65558 -12.53488 -12.41150 -12.29557 -12.02073 -11.93163 -11.89633 -11.68696 -11.54660 -11.45831 -11.21216 -11.14777 -10.87202 -10.71965 -10.23906 -9.87348 -8.85650 -7.72450 -5.17472 0.13027 0.63205 1.06409 1.47469 1.49302 1.57615 2.12904 2.27561 2.51831 3.16470 3.29466 3.36139 3.42140 3.58227 3.66669 3.75299 3.80777 3.96625 3.97648 3.98978 4.12019 4.38712 4.41851 4.48948 4.54271 4.59876 4.61812 4.63008 4.65608 4.66892 4.72731 4.74951 4.84010 4.86502 4.91248 4.98385 5.11857 5.15398 5.17501 5.20304 5.22589 5.25908 5.34337 5.48539 5.54148 5.58284 5.66211 5.70178 5.84517 6.32295 6.48364 6.91991 7.13231 7.19248 7.81448 8.45923 9.28774 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.002860 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.737772 B = 9788.517983 C =10756.006295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.132 3.868 3 C -0.132 4.132 4 C 0.606 3.394 5 O -0.548 6.548 6 N -0.694 5.694 7 C 0.170 3.830 8 C -0.102 4.102 9 C -0.110 4.110 10 C -0.122 4.122 11 C 0.151 3.849 12 H 0.046 0.954 13 N -0.611 5.611 14 C -0.224 4.224 15 H 0.084 0.916 16 C -0.071 4.071 17 N -0.951 5.951 18 Si 0.978 3.022 19 H -0.285 1.285 20 H -0.299 1.299 21 H -0.270 1.270 22 C 0.162 3.838 23 C -0.126 4.126 24 N -0.232 5.232 25 N -0.087 5.087 26 N -0.345 5.345 27 C 0.131 3.869 28 C -0.158 4.158 29 C -0.160 4.160 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.405 0.595 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.244 0.756 41 H -0.022 1.022 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.144 0.856 46 H 0.054 0.946 47 H 0.114 0.886 48 H 0.060 0.940 49 H 0.055 0.945 50 H 0.115 0.885 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 -21.322 -13.014 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.007 4.007 3 C -0.272 4.272 4 C 0.391 3.609 5 O -0.425 6.425 6 N -0.342 5.342 7 C 0.083 3.917 8 C -0.141 4.141 9 C -0.148 4.148 10 C -0.162 4.162 11 C 0.044 3.956 12 H 0.064 0.936 13 N -0.335 5.335 14 C -0.353 4.353 15 H 0.101 0.899 16 C -0.263 4.263 17 N -0.602 5.602 18 Si 0.807 3.193 19 H -0.212 1.212 20 H -0.226 1.226 21 H -0.195 1.195 22 C 0.037 3.963 23 C -0.165 4.165 24 N -0.104 5.104 25 N -0.067 5.067 26 N -0.132 5.132 27 C 0.032 3.968 28 C -0.216 4.216 29 C -0.218 4.218 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.240 0.760 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.054 0.946 41 H -0.004 1.004 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.162 0.838 46 H 0.074 0.926 47 H 0.132 0.868 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.133 0.867 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.157 -21.492 -12.828 26.652 hybrid contribution 0.680 0.821 1.083 1.519 sum -8.478 -20.671 -11.745 25.241 Atomic orbital electron populations 1.20843 0.82180 1.06438 1.05591 1.22358 0.97510 0.85658 0.95206 1.21323 0.89604 0.95629 1.20680 1.16847 0.85466 0.82767 0.75808 1.90710 1.15953 1.83891 1.51989 1.45722 1.10030 1.05075 1.73414 1.21567 0.94669 0.79385 0.96041 1.22178 0.98384 0.98696 0.94801 1.22292 0.98902 0.96572 0.97012 1.22756 0.99412 0.97387 0.96669 1.22052 0.94378 0.93201 0.86001 0.93639 1.44700 1.39346 1.46959 1.02518 1.19407 1.09554 1.14045 0.92302 0.89858 1.25602 1.01884 1.02590 0.96177 1.70064 1.41176 1.47296 1.01636 0.85074 0.78769 0.78618 0.76861 1.21190 1.22559 1.19527 1.21889 0.87508 0.93519 0.93394 1.23352 0.97200 1.00273 0.95713 1.74617 1.20051 1.05024 1.10748 1.81811 0.98293 1.02775 1.23787 1.50984 1.05105 1.08551 1.48608 1.22217 1.02509 0.73044 0.99022 1.22162 1.01992 1.02505 0.94957 1.22173 1.01931 1.02614 0.95099 0.88064 0.88288 0.86955 0.76006 0.91397 0.91023 0.89741 0.90607 0.92704 0.91688 0.94613 1.00429 0.90870 0.90632 0.91880 0.83844 0.92640 0.86761 0.92086 0.92617 0.86665 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 9.41 71.23 0.67 -0.70 16 2 C 0.13 3.03 7.02 41.71 0.29 3.32 16 3 C -0.13 -4.09 6.99 40.82 0.29 -3.81 16 4 C 0.61 20.70 6.97 86.69 0.60 21.30 16 5 O -0.55 -19.15 12.59 -4.01 -0.05 -19.20 16 6 N -0.69 -25.01 5.23 -418.90 -2.19 -27.20 16 7 C 0.17 6.34 0.71 5.19 0.00 6.34 16 8 C -0.10 -3.16 5.25 31.19 0.16 -3.00 16 9 C -0.11 -3.04 6.82 31.59 0.22 -2.83 16 10 C -0.12 -4.37 6.26 31.79 0.20 -4.17 16 11 C 0.15 6.26 3.60 46.24 0.17 6.43 16 12 H 0.05 1.91 7.99 -2.38 -0.02 1.89 16 13 N -0.61 -31.76 3.07 -660.97 -2.03 -33.79 16 14 C -0.22 -12.59 10.03 84.03 0.84 -11.75 16 15 H 0.08 4.46 7.83 -2.92 -0.02 4.44 16 16 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 17 N -0.95 -58.39 10.07 21.65 0.22 -58.17 16 18 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 22 C 0.16 8.54 5.96 87.33 0.52 9.06 16 23 C -0.13 -5.35 5.85 32.37 0.19 -5.16 16 24 N -0.23 -7.69 12.04 -50.00 -0.60 -8.29 16 25 N -0.09 -2.52 13.67 37.02 0.51 -2.01 16 26 N -0.35 -7.11 3.28 -313.41 -1.03 -8.14 16 27 C 0.13 1.34 3.68 44.99 0.17 1.51 16 28 C -0.16 -1.32 9.47 71.98 0.68 -0.63 16 29 C -0.16 -1.56 9.46 71.98 0.68 -0.88 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.88 6.43 -2.38 -0.02 1.86 16 32 H 0.11 0.73 7.19 -2.39 -0.02 0.72 16 33 H 0.40 14.84 8.19 -92.71 -0.76 14.08 16 34 H 0.07 2.05 7.40 -2.39 -0.02 2.03 16 35 H 0.07 2.22 7.41 -2.39 -0.02 2.21 16 36 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 2.18 8.11 -2.38 -0.02 2.16 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 41 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 42 H 0.07 4.36 5.83 -2.39 -0.01 4.35 16 43 H 0.08 3.11 7.65 -2.39 -0.02 3.09 16 44 H 0.06 2.69 6.82 -2.38 -0.02 2.67 16 45 H 0.14 0.51 6.79 -2.39 -0.02 0.49 16 46 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 48 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 51 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -74.68 399.29 3.18 -71.50 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.18 Total: 25.13 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 6.15 Total: 11.41 kcal Atomic # 7 Polarization: -132.48 SS G_CDS: -5.12 Total: -137.61 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.05 Total: -19.20 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -74.68 3.18 -71.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992388158.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.349 kcal (2) G-P(sol) polarization free energy of solvation -74.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds