Wall clock time and date at job start Wed Apr 1 2020 05:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36591 * 126.57905 * 2 1 4 4 C 1.47526 * 125.77282 * 0.02562 * 3 2 1 5 5 O 1.21594 * 119.99864 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00364 * 180.02562 * 4 3 2 7 7 C 1.46501 * 120.00158 * 180.02562 * 6 4 3 8 8 C 1.51217 * 111.46348 * 68.10685 * 7 6 4 9 9 C 1.55687 * 104.60703 * 84.04243 * 8 7 6 10 10 C 1.55076 * 105.77325 * 7.10751 * 9 8 7 11 11 C 1.50527 * 102.31613 * 24.54340 * 10 9 8 12 12 H 1.09002 * 108.14552 * 66.51635 * 11 10 9 13 13 N 1.42711 * 128.14649 * 198.94834 * 11 10 9 14 14 C 1.36936 * 127.10254 * 331.06431 * 13 11 10 15 15 H 1.07995 * 119.99781 * 359.97438 * 14 13 11 16 16 C 1.38811 * 119.99782 * 179.97438 * 14 13 11 17 17 N 1.31616 * 120.00295 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99698 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47354 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46994 * 120.00383 * 18 16 14 21 21 H 1.48503 * 109.47208 * 240.00315 * 18 16 14 22 22 C 1.49290 * 105.79302 * 151.03775 * 13 11 10 23 23 C 1.52133 * 110.70684 * 288.09367 * 7 6 4 24 24 N 1.34402 * 108.45984 * 180.26317 * 3 2 1 25 25 N 1.28763 * 109.52284 * 359.58689 * 24 3 2 26 26 N 1.34818 * 126.58100 * 180.02562 * 2 1 3 27 27 C 1.46501 * 126.59451 * 0.02562 * 26 2 1 28 28 C 1.53003 * 109.46867 * 120.00113 * 27 26 2 29 29 C 1.52996 * 109.47028 * 240.00405 * 27 26 2 30 30 H 1.09000 * 109.47617 * 89.97661 * 1 2 3 31 31 H 1.09003 * 109.47325 * 209.97224 * 1 2 3 32 32 H 1.09002 * 109.47261 * 329.97120 * 1 2 3 33 33 H 0.97001 * 119.99681 * 359.97438 * 6 4 3 34 34 H 1.08998 * 110.41355 * 202.83079 * 8 7 6 35 35 H 1.09003 * 110.41404 * 325.14432 * 8 7 6 36 36 H 1.09004 * 110.15940 * 126.36722 * 9 8 7 37 37 H 1.09003 * 110.16344 * 248.05521 * 9 8 7 38 38 H 1.08996 * 111.05466 * 266.08477 * 10 9 8 39 39 H 1.08994 * 110.35726 * 142.68626 * 10 9 8 40 40 H 0.96995 * 120.00273 * 179.97438 * 17 16 14 41 41 H 1.08998 * 110.04735 * 110.60076 * 22 13 11 42 42 H 1.09002 * 110.05576 * 232.02257 * 22 13 11 43 43 H 1.09000 * 111.15225 * 168.28714 * 23 7 6 44 44 H 1.09007 * 111.14880 * 44.06418 * 23 7 6 45 45 H 1.09004 * 109.46799 * 0.02562 * 27 26 2 46 46 H 1.08997 * 109.46773 * 60.00234 * 28 27 26 47 47 H 1.08998 * 109.47018 * 179.97438 * 28 27 26 48 48 H 1.08997 * 109.46872 * 300.00254 * 28 27 26 49 49 H 1.08998 * 109.47057 * 180.02562 * 29 27 26 50 50 H 1.09004 * 109.47088 * 299.99526 * 29 27 26 51 51 H 1.08995 * 109.47685 * 60.00021 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6859 2.7628 0.0006 6 7 2.7816 3.4988 0.0000 7 6 2.3374 4.8948 0.0011 8 6 1.6710 5.2624 1.3078 9 6 2.8474 5.6340 2.2575 10 6 4.1209 5.6306 1.3725 11 6 3.5589 5.8890 0.0002 12 1 3.1487 6.8988 -0.0141 13 7 4.1712 5.6394 -1.2645 14 6 5.5109 5.6402 -1.5481 15 1 6.2280 5.8464 -0.7674 16 6 5.9471 5.3759 -2.8391 17 7 5.0731 5.1251 -3.7907 18 14 7.7746 5.3776 -3.2262 19 1 8.5416 5.6860 -1.9926 20 1 8.1739 4.0411 -3.7358 21 1 8.0611 6.4066 -4.2580 22 6 3.0497 5.3766 -2.2142 23 6 1.7516 5.2740 -1.3508 24 7 3.5983 0.6789 -0.0059 25 7 3.6299 -0.6083 -0.0007 26 7 2.3104 -1.0826 -0.0005 27 6 1.8864 -2.4849 -0.0016 28 6 2.4297 -3.1809 -1.2512 29 6 2.4286 -3.1827 1.2473 30 1 -0.3634 0.0004 -1.0276 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3634 0.8897 0.5143 33 1 3.7292 3.2913 -0.0004 34 1 1.0093 6.1174 1.1697 35 1 1.1149 4.4125 1.7033 36 1 2.6861 6.6232 2.6860 37 1 2.9387 4.8920 3.0507 38 1 4.6231 4.6641 1.4127 39 1 4.7950 6.4319 1.6751 40 1 5.3779 4.9408 -4.6929 41 1 2.9617 6.1983 -2.9249 42 1 3.2212 4.4403 -2.7453 43 1 1.2356 6.2328 -1.3009 44 1 1.0905 4.4928 -1.7261 45 1 0.7975 -2.5352 -0.0025 46 1 3.5185 -3.1306 -1.2507 47 1 2.1146 -4.2244 -1.2519 48 1 2.0434 -2.6837 -2.1409 49 1 2.1135 -4.2261 1.2462 50 1 3.5175 -3.1324 1.2478 51 1 2.0416 -2.6869 2.1375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992388162.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:29 Heat of formation + Delta-G solvation = 71.564146 kcal Electronic energy + Delta-G solvation = -32540.344746 eV Core-core repulsion = 28476.893971 eV Total energy + Delta-G solvation = -4063.450775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.31450 -41.84848 -39.37240 -37.35800 -36.17661 -34.54560 -33.91846 -33.56063 -32.09741 -31.30171 -28.82547 -28.51397 -28.29294 -27.28710 -25.95008 -25.01943 -24.29084 -22.20823 -21.60248 -21.25991 -21.13611 -19.95598 -18.75043 -18.33820 -17.52236 -17.28035 -17.21385 -16.43355 -16.08104 -15.81741 -15.70452 -15.62053 -15.22088 -15.10645 -14.92320 -14.21888 -14.17913 -14.04052 -13.97775 -13.95551 -13.52373 -13.23311 -13.21218 -13.02994 -12.98185 -12.93839 -12.86109 -12.65393 -12.53673 -12.38082 -12.13999 -12.08856 -11.99566 -11.91250 -11.79260 -11.55437 -11.33210 -11.13429 -11.08162 -10.75355 -10.65090 -10.21108 -9.81066 -8.85368 -7.83645 -5.18235 0.15275 0.68289 1.09462 1.44657 1.46248 1.55499 2.23847 2.37180 2.50295 3.09931 3.22730 3.32675 3.37435 3.59360 3.72535 3.80246 3.82395 3.93262 3.97187 4.12328 4.13137 4.29306 4.40364 4.46240 4.55315 4.60947 4.61404 4.62842 4.65266 4.68447 4.72889 4.74534 4.82278 4.86469 4.97030 4.99127 5.09534 5.13934 5.15429 5.16431 5.22107 5.26248 5.29956 5.50961 5.58013 5.60029 5.62662 5.70238 5.81854 6.19709 6.59063 6.96631 7.06009 7.27814 7.78475 8.50119 9.28386 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.003854 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.624592 B = 7264.268738 C = 8795.560407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.130 3.870 3 C -0.133 4.133 4 C 0.603 3.397 5 O -0.555 6.555 6 N -0.680 5.680 7 C 0.139 3.861 8 C -0.104 4.104 9 C -0.103 4.103 10 C -0.113 4.113 11 C 0.144 3.856 12 H 0.027 0.973 13 N -0.598 5.598 14 C -0.229 4.229 15 H 0.086 0.914 16 C -0.062 4.062 17 N -0.950 5.950 18 Si 0.970 3.030 19 H -0.263 1.263 20 H -0.299 1.299 21 H -0.293 1.293 22 C 0.190 3.810 23 C -0.125 4.125 24 N -0.234 5.234 25 N -0.092 5.092 26 N -0.346 5.346 27 C 0.131 3.869 28 C -0.161 4.161 29 C -0.158 4.158 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.401 0.599 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.243 0.757 41 H 0.003 0.997 42 H 0.023 0.977 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.145 0.855 46 H 0.052 0.948 47 H 0.117 0.883 48 H 0.054 0.946 49 H 0.115 0.885 50 H 0.053 0.947 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.036 -15.603 12.805 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.010 4.010 3 C -0.273 4.273 4 C 0.388 3.612 5 O -0.435 6.435 6 N -0.328 5.328 7 C 0.051 3.949 8 C -0.142 4.142 9 C -0.140 4.140 10 C -0.151 4.151 11 C 0.035 3.965 12 H 0.044 0.956 13 N -0.321 5.321 14 C -0.358 4.358 15 H 0.103 0.897 16 C -0.255 4.255 17 N -0.599 5.599 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.227 1.227 21 H -0.221 1.221 22 C 0.066 3.934 23 C -0.164 4.164 24 N -0.107 5.107 25 N -0.071 5.071 26 N -0.133 5.133 27 C 0.032 3.968 28 C -0.218 4.218 29 C -0.216 4.216 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.022 0.978 42 H 0.041 0.959 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.163 0.837 46 H 0.071 0.929 47 H 0.135 0.865 48 H 0.073 0.927 49 H 0.134 0.866 50 H 0.072 0.928 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.192 -15.852 12.634 23.655 hybrid contribution 1.027 0.240 -1.191 1.591 sum -11.165 -15.613 11.442 22.346 Atomic orbital electron populations 1.20828 0.81996 1.06438 1.05527 1.22382 0.97547 0.85590 0.95455 1.21466 0.89469 0.96067 1.20309 1.16845 0.85509 0.82774 0.76072 1.90667 1.15813 1.83960 1.53023 1.45599 1.09790 1.05181 1.72227 1.21605 0.97678 0.81013 0.94580 1.21859 0.97707 1.01939 0.92734 1.22555 0.91816 1.02741 0.96937 1.21655 0.98466 1.01313 0.93694 1.21092 0.92208 0.95463 0.87752 0.95595 1.43792 1.01760 1.82073 1.04497 1.19406 0.82226 1.39800 0.94331 0.89655 1.25536 1.01398 1.02524 0.96083 1.70141 1.33072 1.55606 1.01099 0.85121 0.80616 0.76354 0.77960 1.18755 1.22673 1.22070 1.21682 0.83996 0.97391 0.90363 1.22645 0.96857 1.01440 0.95419 1.74666 1.20365 1.04987 1.10640 1.81810 0.98376 1.02846 1.24034 1.51004 1.05112 1.08572 1.48660 1.22218 1.02536 0.73060 0.98976 1.22173 1.01845 1.02652 0.95161 1.22158 1.01893 1.02540 0.94962 0.88161 0.86903 0.88226 0.76382 0.89284 0.91306 0.89261 0.90913 0.92800 0.91098 0.94725 0.97843 0.95869 0.89497 0.91894 0.83701 0.92908 0.86500 0.92721 0.86647 0.92820 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.41 71.24 0.67 -0.86 16 2 C 0.13 3.38 7.02 41.71 0.29 3.68 16 3 C -0.13 -4.66 6.99 40.82 0.29 -4.38 16 4 C 0.60 22.62 7.13 86.69 0.62 23.24 16 5 O -0.56 -20.58 12.86 -4.01 -0.05 -20.63 16 6 N -0.68 -26.88 4.35 -422.80 -1.84 -28.72 16 7 C 0.14 5.19 0.42 4.32 0.00 5.19 16 8 C -0.10 -3.09 6.06 30.94 0.19 -2.90 16 9 C -0.10 -2.71 6.90 32.23 0.22 -2.49 16 10 C -0.11 -3.82 6.37 30.50 0.19 -3.62 16 11 C 0.14 5.89 2.65 46.47 0.12 6.02 16 12 H 0.03 1.09 7.99 -2.39 -0.02 1.07 16 13 N -0.60 -30.75 3.10 -668.59 -2.08 -32.83 16 14 C -0.23 -12.85 10.29 84.03 0.86 -11.99 16 15 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 16 C -0.06 -3.64 5.49 84.86 0.47 -3.17 16 17 N -0.95 -58.95 10.54 21.65 0.23 -58.72 16 18 Si 0.97 47.44 29.55 68.60 2.03 49.47 16 19 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 21 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 22 C 0.19 9.83 5.32 86.96 0.46 10.30 16 23 C -0.12 -5.11 6.21 31.43 0.20 -4.91 16 24 N -0.23 -9.02 12.04 -49.99 -0.60 -9.62 16 25 N -0.09 -3.05 13.67 37.02 0.51 -2.54 16 26 N -0.35 -8.30 3.28 -313.39 -1.03 -9.33 16 27 C 0.13 1.69 3.68 44.99 0.17 1.85 16 28 C -0.16 -2.01 9.47 71.98 0.68 -1.33 16 29 C -0.16 -1.68 9.47 71.98 0.68 -0.99 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.11 0.94 7.19 -2.39 -0.02 0.92 16 32 H 0.10 2.07 6.43 -2.39 -0.02 2.06 16 33 H 0.40 17.55 7.47 -92.71 -0.69 16.86 16 34 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.07 2.10 6.86 -2.39 -0.02 2.09 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.96 7.36 -2.39 -0.02 1.94 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 41 H 0.00 0.19 7.98 -2.39 -0.02 0.17 16 42 H 0.02 1.37 7.04 -2.39 -0.02 1.35 16 43 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.06 2.64 7.15 -2.38 -0.02 2.62 16 45 H 0.15 0.82 6.79 -2.38 -0.02 0.81 16 46 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 51 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -76.32 399.70 3.53 -72.79 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.25 Total: 26.51 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 6.11 Total: 13.63 kcal Atomic # 7 Polarization: -136.96 SS G_CDS: -4.81 Total: -141.77 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.05 Total: -20.63 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -76.32 3.53 -72.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992388162.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.357 kcal (2) G-P(sol) polarization free energy of solvation -76.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds