Wall clock time and date at job start Wed Apr 1 2020 05:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 110.63859 * 2 1 4 4 C 1.54327 * 110.72060 * 123.13842 * 2 1 3 5 5 N 1.47013 * 107.27231 * 140.55827 * 4 2 1 6 6 C 1.34777 * 125.64882 * 181.02697 * 5 4 2 7 7 O 1.21281 * 120.00061 * 5.04638 * 6 5 4 8 8 C 1.50704 * 120.00206 * 185.04661 * 6 5 4 9 9 H 1.09010 * 107.87804 * 21.57273 * 8 6 5 10 10 C 1.50948 * 108.03045 * 265.02473 * 8 6 5 11 11 C 1.53673 * 110.95782 * 165.75096 * 10 8 6 12 12 C 1.51886 * 106.90159 * 79.08017 * 11 10 8 13 13 N 1.29900 * 127.79851 * 114.80835 * 12 11 10 14 14 N 1.29032 * 109.22227 * 180.26267 * 13 12 11 15 15 C 1.30975 * 109.70855 * 359.95019 * 14 13 12 16 16 N 1.34595 * 124.58064 * 295.21134 * 12 11 10 17 17 C 1.47503 * 125.02578 * 358.85916 * 16 12 11 18 18 C 1.50866 * 108.00149 * 138.10386 * 8 6 5 19 19 C 1.47430 * 108.70615 * 1.28898 * 5 4 2 20 20 C 1.55134 * 104.71910 * 335.55554 * 19 5 4 21 21 H 1.09004 * 111.18823 * 279.18671 * 20 19 5 22 22 N 1.46499 * 110.90682 * 155.27645 * 20 19 5 23 23 C 1.36936 * 120.00169 * 92.97229 * 22 20 19 24 24 H 1.07995 * 119.99744 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99756 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99543 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00246 * 0.02562 * 25 23 22 28 28 H 1.48498 * 109.47573 * 89.99174 * 27 25 23 29 29 H 1.48498 * 109.47353 * 210.00066 * 27 25 23 30 30 H 1.48509 * 109.46783 * 329.99574 * 27 25 23 31 31 H 1.08995 * 109.47487 * 298.31747 * 1 2 3 32 32 H 1.09003 * 109.47094 * 58.31405 * 1 2 3 33 33 H 1.09000 * 109.46802 * 178.30996 * 1 2 3 34 34 H 1.09001 * 109.47027 * 181.68354 * 3 2 1 35 35 H 1.08998 * 109.47376 * 301.68299 * 3 2 1 36 36 H 1.08999 * 109.47123 * 61.68982 * 3 2 1 37 37 H 1.09000 * 109.87733 * 21.13901 * 4 2 1 38 38 H 1.09003 * 109.88144 * 259.98014 * 4 2 1 39 39 H 1.09000 * 109.17958 * 45.36974 * 10 8 6 40 40 H 1.09000 * 109.13782 * 286.10567 * 10 8 6 41 41 H 1.09001 * 109.96453 * 319.74074 * 11 10 8 42 42 H 1.08999 * 110.04468 * 198.46819 * 11 10 8 43 43 H 1.07997 * 126.61339 * 179.89948 * 15 14 13 44 44 H 1.08999 * 110.11809 * 307.08235 * 17 16 12 45 45 H 1.08998 * 110.02387 * 185.76893 * 17 16 12 46 46 H 1.08998 * 109.14505 * 314.85301 * 18 8 6 47 47 H 1.09000 * 109.13924 * 74.05330 * 18 8 6 48 48 H 1.08997 * 110.36608 * 94.48096 * 19 5 4 49 49 H 1.08995 * 110.36875 * 216.80766 * 19 5 4 50 50 H 0.97000 * 119.99319 * 272.97418 * 22 20 19 51 51 H 0.97006 * 120.00003 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0692 1.4318 0.0000 4 6 2.0760 -0.7891 1.2087 5 7 3.2444 -1.5494 0.7418 6 6 3.9922 -2.3809 1.4940 7 8 3.6666 -2.6227 2.6370 8 6 5.2330 -3.0104 0.9149 9 1 5.5562 -2.3991 0.0721 10 6 4.8618 -4.3750 0.3870 11 6 5.9675 -4.9315 -0.5236 12 6 7.0587 -5.4702 0.3853 13 7 7.4448 -6.7030 0.5215 14 7 8.3941 -6.7569 1.3937 15 6 8.6480 -5.5540 1.8452 16 7 7.8029 -4.7161 1.2154 17 6 7.6937 -3.2519 1.3558 18 6 6.3136 -2.9642 1.9666 19 6 3.4667 -1.2467 -0.6839 20 6 2.0790 -0.7975 -1.2124 21 1 1.4453 -1.6560 -1.4347 22 7 2.2215 0.0655 -2.3876 23 6 2.1869 -0.4776 -3.6442 24 1 2.0549 -1.5422 -3.7688 25 6 2.3214 0.3402 -4.7577 26 7 2.2887 -0.1819 -5.9654 27 14 2.5504 2.1815 -4.5421 28 1 3.9994 2.4925 -4.4470 29 1 1.9668 2.8928 -5.7077 30 1 1.8669 2.6232 -3.2998 31 1 -0.3634 0.4874 0.9046 32 1 -0.3633 0.5398 -0.8745 33 1 -0.3633 -1.0272 -0.0303 34 1 3.1586 1.4097 -0.0302 35 1 1.6922 1.9621 -0.8745 36 1 1.7412 1.9436 0.9047 37 1 1.3129 -1.4730 1.5801 38 1 2.3740 -0.0989 1.9980 39 1 3.9345 -4.2992 -0.1809 40 1 4.7132 -5.0545 1.2262 41 1 6.3666 -4.1362 -1.1532 42 1 5.5708 -5.7343 -1.1451 43 1 9.3891 -5.2863 2.5838 44 1 7.7746 -2.7746 0.3792 45 1 8.4771 -2.8808 2.0165 46 1 6.3244 -1.9753 2.4248 47 1 6.0996 -3.7103 2.7319 48 1 4.1947 -0.4428 -0.7920 49 1 3.8032 -2.1382 -1.2130 50 1 2.3405 1.0217 -2.2755 51 1 2.3830 0.3895 -6.7436 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996068432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:56 Heat of formation + Delta-G solvation = 58.732996 kcal Electronic energy + Delta-G solvation = -32015.724852 eV Core-core repulsion = 27951.717677 eV Total energy + Delta-G solvation = -4064.007175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.46850 -40.58378 -38.73607 -36.97091 -34.57826 -34.35123 -33.33547 -32.32186 -31.25347 -30.14008 -28.12494 -27.75353 -27.28154 -25.94947 -24.64791 -23.88969 -22.61994 -21.93867 -21.20680 -20.48825 -19.22427 -18.87046 -17.93051 -17.76622 -17.06896 -16.14019 -16.10132 -15.70620 -15.25863 -14.99646 -14.89724 -14.54835 -14.32735 -14.00842 -13.79624 -13.73188 -13.35837 -13.22368 -12.93901 -12.87941 -12.64754 -12.49964 -12.29209 -12.10774 -11.97343 -11.79504 -11.60832 -11.53039 -11.48826 -11.29558 -11.17175 -11.11207 -10.70450 -10.68412 -10.51219 -10.44124 -10.41696 -10.10359 -9.77226 -9.70915 -9.33315 -9.14090 -8.55933 -7.50010 -5.94623 -3.32951 1.68853 2.25203 2.56254 2.74960 2.92780 3.21869 3.24174 3.32702 3.92691 4.07770 4.11838 4.20423 4.40904 4.41607 4.51491 4.63145 4.69355 4.74682 4.82994 4.90718 4.93582 5.07171 5.11758 5.16977 5.26606 5.33495 5.36314 5.45602 5.52178 5.53140 5.59149 5.62044 5.69838 5.72553 5.78098 5.80093 5.83663 5.87841 5.96147 6.01835 6.06347 6.08962 6.19717 6.32575 6.36021 6.45355 6.60981 6.64669 7.56025 7.79461 8.12361 8.23920 8.58487 9.00357 9.72292 9.90266 11.22852 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.003085 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.329401 B = 9074.998256 C =10422.704012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 C -0.138 4.138 4 C 0.120 3.880 5 N -0.611 5.611 6 C 0.529 3.471 7 O -0.550 6.550 8 C -0.104 4.104 9 H 0.093 0.907 10 C -0.108 4.108 11 C -0.031 4.031 12 C 0.181 3.819 13 N -0.295 5.295 14 N -0.305 5.305 15 C 0.146 3.854 16 N -0.469 5.469 17 C 0.106 3.894 18 C -0.118 4.118 19 C 0.070 3.930 20 C 0.188 3.812 21 H 0.078 0.922 22 N -0.733 5.733 23 C -0.255 4.255 24 H 0.093 0.907 25 C 0.012 3.988 26 N -0.926 5.926 27 Si 0.879 3.121 28 H -0.283 1.283 29 H -0.289 1.289 30 H -0.276 1.276 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.217 0.783 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.366 0.634 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.729 -0.553 15.904 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.093 4.093 3 C -0.195 4.195 4 C -0.002 4.002 5 N -0.344 5.344 6 C 0.317 3.683 7 O -0.428 6.428 8 C -0.126 4.126 9 H 0.111 0.889 10 C -0.146 4.146 11 C -0.071 4.071 12 C -0.087 4.087 13 N -0.135 5.135 14 N -0.144 5.144 15 C -0.141 4.141 16 N -0.160 5.160 17 C -0.016 4.016 18 C -0.157 4.157 19 C -0.056 4.056 20 C 0.076 3.924 21 H 0.096 0.904 22 N -0.376 5.376 23 C -0.385 4.385 24 H 0.110 0.890 25 C -0.184 4.184 26 N -0.573 5.573 27 Si 0.709 3.291 28 H -0.209 1.209 29 H -0.215 1.215 30 H -0.202 1.202 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.128 0.872 43 H 0.234 0.766 44 H 0.119 0.881 45 H 0.126 0.874 46 H 0.109 0.891 47 H 0.102 0.898 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.202 0.798 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.662 -2.356 16.132 18.014 hybrid contribution 0.308 2.908 0.234 2.934 sum 7.971 0.553 16.366 18.212 Atomic orbital electron populations 1.21702 0.93134 1.02086 1.01870 1.21920 0.96407 0.95720 0.95211 1.21774 1.00947 0.95004 1.01817 1.22028 0.87610 0.94193 0.96418 1.48537 1.29663 1.43765 1.12400 1.20227 0.84328 0.78331 0.85388 1.90689 1.71943 1.61680 1.18503 1.20642 0.93783 0.98523 0.99608 0.88882 1.21231 0.98944 0.94400 1.00065 1.20579 0.90205 1.01763 0.94525 1.24912 0.98251 0.88573 0.96954 1.74251 1.09177 1.15905 1.14181 1.74524 1.11507 1.19185 1.09202 1.26312 0.98714 0.86903 1.02221 1.46327 1.28027 1.10012 1.31665 1.22499 0.99329 0.75883 1.03925 1.21499 0.91476 1.04560 0.98137 1.23540 1.02338 1.00995 0.78697 1.21338 0.91927 0.93455 0.85710 0.90387 1.42762 1.87756 1.05321 1.01716 1.19069 1.43450 0.94747 0.81197 0.88952 1.24663 1.01401 0.97296 0.95077 1.69688 1.55982 1.34569 0.97038 0.86667 0.78071 0.87204 0.77186 1.20943 1.21539 1.20225 0.93046 0.91458 0.92460 0.92542 0.91623 0.92759 0.91436 0.91862 0.89286 0.90560 0.88815 0.87159 0.76645 0.88081 0.87440 0.89068 0.89757 0.91305 0.90591 0.79826 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.48 37.16 0.32 -1.31 16 2 C -0.09 -1.21 0.85 -152.67 -0.13 -1.34 16 3 C -0.14 -1.78 7.54 37.16 0.28 -1.50 16 4 C 0.12 1.54 6.05 -3.07 -0.02 1.52 16 5 N -0.61 -7.91 3.32 -170.38 -0.57 -8.47 16 6 C 0.53 6.87 6.40 -10.98 -0.07 6.80 16 7 O -0.55 -8.95 16.86 5.56 0.09 -8.85 16 8 C -0.10 -1.00 1.49 -93.87 -0.14 -1.14 16 9 H 0.09 0.79 6.37 -51.92 -0.33 0.46 16 10 C -0.11 -1.06 4.90 -27.41 -0.13 -1.19 16 11 C -0.03 -0.29 6.02 -26.95 -0.16 -0.45 16 12 C 0.18 2.08 7.03 -155.74 -1.09 0.99 16 13 N -0.30 -4.36 12.23 32.84 0.40 -3.96 16 14 N -0.30 -4.27 12.25 29.60 0.36 -3.91 16 15 C 0.15 1.42 12.83 -90.34 -1.16 0.26 16 16 N -0.47 -4.29 2.70 -114.23 -0.31 -4.60 16 17 C 0.11 0.62 6.54 -3.16 -0.02 0.60 16 18 C -0.12 -0.94 4.55 -27.47 -0.12 -1.07 16 19 C 0.07 0.96 5.50 -2.40 -0.01 0.94 16 20 C 0.19 2.99 2.97 -65.66 -0.20 2.80 16 21 H 0.08 1.33 7.99 -51.93 -0.41 0.91 16 22 N -0.73 -14.65 4.95 -51.24 -0.25 -14.90 16 23 C -0.26 -6.33 10.44 -15.06 -0.16 -6.49 16 24 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 25 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 26 N -0.93 -26.95 13.97 55.49 0.78 -26.18 16 27 Si 0.88 20.05 27.74 -169.99 -4.71 15.33 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.28 -5.83 6.52 56.52 0.37 -5.46 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.06 0.72 7.44 -51.93 -0.39 0.34 16 35 H 0.06 0.95 6.76 -51.93 -0.35 0.60 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 38 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 39 H 0.09 0.89 7.97 -51.93 -0.41 0.48 16 40 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 41 H 0.09 0.73 7.89 -51.93 -0.41 0.32 16 42 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.22 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.10 0.49 7.87 -51.93 -0.41 0.08 16 45 H 0.11 0.33 8.13 -51.93 -0.42 -0.09 16 46 H 0.09 0.68 7.97 -51.93 -0.41 0.27 16 47 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 48 H 0.07 0.95 7.71 -51.93 -0.40 0.55 16 49 H 0.08 1.00 7.58 -51.93 -0.39 0.61 16 50 H 0.37 7.25 3.32 -40.82 -0.14 7.11 16 51 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 395.61 15.07 5.96 5.96 Total: -1.00 -33.69 395.61 -9.42 -43.11 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -8.25 Total: 6.81 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.92 Total: -0.34 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: 0.41 Total: -62.01 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.71 Total: 15.33 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.69 -9.42 -43.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996068432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.841 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds