Wall clock time and date at job start Wed Apr 1 2020 05:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 110.63859 * 2 1 4 4 C 1.54327 * 110.72060 * 123.13842 * 2 1 3 5 5 N 1.47013 * 107.27231 * 140.55827 * 4 2 1 6 6 C 1.34777 * 125.64882 * 181.02697 * 5 4 2 7 7 O 1.21281 * 120.00061 * 5.04638 * 6 5 4 8 8 C 1.50704 * 120.00206 * 185.04661 * 6 5 4 9 9 H 1.09010 * 107.87804 * 21.57273 * 8 6 5 10 10 C 1.50948 * 108.03045 * 265.02473 * 8 6 5 11 11 C 1.53673 * 110.95782 * 165.75096 * 10 8 6 12 12 C 1.51886 * 106.90159 * 79.08017 * 11 10 8 13 13 N 1.29900 * 127.79851 * 114.80835 * 12 11 10 14 14 N 1.29032 * 109.22227 * 180.26267 * 13 12 11 15 15 C 1.30975 * 109.70855 * 359.95019 * 14 13 12 16 16 N 1.34595 * 124.58064 * 295.21134 * 12 11 10 17 17 C 1.47503 * 125.02578 * 358.85916 * 16 12 11 18 18 C 1.50866 * 108.00149 * 138.10386 * 8 6 5 19 19 C 1.47430 * 108.70615 * 1.28898 * 5 4 2 20 20 C 1.55134 * 104.71910 * 335.55554 * 19 5 4 21 21 H 1.09004 * 111.18823 * 279.18671 * 20 19 5 22 22 N 1.46499 * 110.90682 * 155.27645 * 20 19 5 23 23 C 1.36936 * 120.00169 * 92.97229 * 22 20 19 24 24 H 1.07995 * 119.99744 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99756 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99543 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00246 * 0.02562 * 25 23 22 28 28 H 1.48498 * 109.47573 * 89.99174 * 27 25 23 29 29 H 1.48498 * 109.47353 * 210.00066 * 27 25 23 30 30 H 1.48509 * 109.46783 * 329.99574 * 27 25 23 31 31 H 1.08995 * 109.47487 * 298.31747 * 1 2 3 32 32 H 1.09003 * 109.47094 * 58.31405 * 1 2 3 33 33 H 1.09000 * 109.46802 * 178.30996 * 1 2 3 34 34 H 1.09001 * 109.47027 * 181.68354 * 3 2 1 35 35 H 1.08998 * 109.47376 * 301.68299 * 3 2 1 36 36 H 1.08999 * 109.47123 * 61.68982 * 3 2 1 37 37 H 1.09000 * 109.87733 * 21.13901 * 4 2 1 38 38 H 1.09003 * 109.88144 * 259.98014 * 4 2 1 39 39 H 1.09000 * 109.17958 * 45.36974 * 10 8 6 40 40 H 1.09000 * 109.13782 * 286.10567 * 10 8 6 41 41 H 1.09001 * 109.96453 * 319.74074 * 11 10 8 42 42 H 1.08999 * 110.04468 * 198.46819 * 11 10 8 43 43 H 1.07997 * 126.61339 * 179.89948 * 15 14 13 44 44 H 1.08999 * 110.11809 * 307.08235 * 17 16 12 45 45 H 1.08998 * 110.02387 * 185.76893 * 17 16 12 46 46 H 1.08998 * 109.14505 * 314.85301 * 18 8 6 47 47 H 1.09000 * 109.13924 * 74.05330 * 18 8 6 48 48 H 1.08997 * 110.36608 * 94.48096 * 19 5 4 49 49 H 1.08995 * 110.36875 * 216.80766 * 19 5 4 50 50 H 0.97000 * 119.99319 * 272.97418 * 22 20 19 51 51 H 0.97006 * 120.00003 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0692 1.4318 0.0000 4 6 2.0760 -0.7891 1.2087 5 7 3.2444 -1.5494 0.7418 6 6 3.9922 -2.3809 1.4940 7 8 3.6666 -2.6227 2.6370 8 6 5.2330 -3.0104 0.9149 9 1 5.5562 -2.3991 0.0721 10 6 4.8618 -4.3750 0.3870 11 6 5.9675 -4.9315 -0.5236 12 6 7.0587 -5.4702 0.3853 13 7 7.4448 -6.7030 0.5215 14 7 8.3941 -6.7569 1.3937 15 6 8.6480 -5.5540 1.8452 16 7 7.8029 -4.7161 1.2154 17 6 7.6937 -3.2519 1.3558 18 6 6.3136 -2.9642 1.9666 19 6 3.4667 -1.2467 -0.6839 20 6 2.0790 -0.7975 -1.2124 21 1 1.4453 -1.6560 -1.4347 22 7 2.2215 0.0655 -2.3876 23 6 2.1869 -0.4776 -3.6442 24 1 2.0549 -1.5422 -3.7688 25 6 2.3214 0.3402 -4.7577 26 7 2.2887 -0.1819 -5.9654 27 14 2.5504 2.1815 -4.5421 28 1 3.9994 2.4925 -4.4470 29 1 1.9668 2.8928 -5.7077 30 1 1.8669 2.6232 -3.2998 31 1 -0.3634 0.4874 0.9046 32 1 -0.3633 0.5398 -0.8745 33 1 -0.3633 -1.0272 -0.0303 34 1 3.1586 1.4097 -0.0302 35 1 1.6922 1.9621 -0.8745 36 1 1.7412 1.9436 0.9047 37 1 1.3129 -1.4730 1.5801 38 1 2.3740 -0.0989 1.9980 39 1 3.9345 -4.2992 -0.1809 40 1 4.7132 -5.0545 1.2262 41 1 6.3666 -4.1362 -1.1532 42 1 5.5708 -5.7343 -1.1451 43 1 9.3891 -5.2863 2.5838 44 1 7.7746 -2.7746 0.3792 45 1 8.4771 -2.8808 2.0165 46 1 6.3244 -1.9753 2.4248 47 1 6.0996 -3.7103 2.7319 48 1 4.1947 -0.4428 -0.7920 49 1 3.8032 -2.1382 -1.2130 50 1 2.3405 1.0217 -2.2755 51 1 2.3830 0.3895 -6.7436 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996068432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:55 Heat of formation + Delta-G solvation = 38.740449 kcal Electronic energy + Delta-G solvation = -32016.591794 eV Core-core repulsion = 27951.717677 eV Total energy + Delta-G solvation = -4064.874117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -44.26411 -41.64478 -39.81809 -37.85934 -35.96735 -35.32542 -34.54409 -33.16701 -32.98524 -30.92420 -29.48768 -28.65270 -28.30164 -26.84789 -25.54652 -25.38827 -23.41354 -23.11200 -22.23904 -21.24246 -20.49069 -19.98045 -19.39964 -18.66739 -17.98166 -17.28016 -16.91066 -16.80304 -16.39404 -16.03742 -15.87862 -15.66121 -15.41608 -15.15144 -14.86712 -14.76898 -14.51621 -14.36924 -14.13248 -13.73421 -13.68723 -13.46258 -13.31194 -13.14249 -13.06589 -12.95404 -12.77897 -12.68162 -12.63295 -12.46168 -12.14537 -12.06716 -11.99455 -11.89847 -11.80190 -11.63202 -11.37286 -11.33429 -11.17309 -10.93273 -10.74446 -10.20751 -9.70143 -9.27657 -7.97450 -5.31978 0.94043 1.41411 1.43973 1.51510 1.53280 1.62167 1.87494 1.92667 2.52100 3.14739 3.19417 3.32039 3.43689 3.55608 3.60496 3.65597 3.79334 3.84024 3.87351 3.99674 4.02341 4.18755 4.23867 4.27411 4.33748 4.36030 4.39622 4.43152 4.45656 4.66965 4.67963 4.77420 4.81907 4.82934 4.84564 4.91306 4.98380 4.99562 5.03235 5.05538 5.08233 5.15715 5.16030 5.25811 5.29145 5.38956 5.47472 5.83141 5.99044 6.25740 6.49433 7.07422 7.12437 7.74795 7.85957 8.05215 9.23410 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.003085 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.329401 B = 9074.998256 C =10422.704012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 C -0.137 4.137 4 C 0.122 3.878 5 N -0.609 5.609 6 C 0.529 3.471 7 O -0.583 6.583 8 C -0.098 4.098 9 H 0.112 0.888 10 C -0.099 4.099 11 C -0.025 4.025 12 C 0.177 3.823 13 N -0.346 5.346 14 N -0.358 5.358 15 C 0.163 3.837 16 N -0.467 5.467 17 C 0.107 3.893 18 C -0.113 4.113 19 C 0.083 3.917 20 C 0.176 3.824 21 H 0.061 0.939 22 N -0.733 5.733 23 C -0.227 4.227 24 H 0.062 0.938 25 C -0.056 4.056 26 N -0.981 5.981 27 Si 0.941 3.059 28 H -0.276 1.276 29 H -0.304 1.304 30 H -0.248 1.248 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.261 0.739 44 H 0.119 0.881 45 H 0.146 0.854 46 H 0.103 0.897 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.371 0.629 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.208 1.983 18.096 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.083 4.083 3 C -0.194 4.194 4 C -0.001 4.001 5 N -0.341 5.341 6 C 0.319 3.681 7 O -0.464 6.464 8 C -0.119 4.119 9 H 0.130 0.870 10 C -0.138 4.138 11 C -0.065 4.065 12 C -0.093 4.093 13 N -0.185 5.185 14 N -0.197 5.197 15 C -0.125 4.125 16 N -0.157 5.157 17 C -0.013 4.013 18 C -0.151 4.151 19 C -0.043 4.043 20 C 0.066 3.934 21 H 0.079 0.921 22 N -0.377 5.377 23 C -0.358 4.358 24 H 0.080 0.920 25 C -0.248 4.248 26 N -0.631 5.631 27 Si 0.769 3.231 28 H -0.202 1.202 29 H -0.231 1.231 30 H -0.173 1.173 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.134 0.866 42 H 0.125 0.875 43 H 0.277 0.723 44 H 0.137 0.863 45 H 0.163 0.837 46 H 0.121 0.879 47 H 0.080 0.920 48 H 0.096 0.904 49 H 0.099 0.901 50 H 0.207 0.793 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.139 0.183 18.398 20.544 hybrid contribution -0.228 2.036 -0.333 2.076 sum 8.912 2.219 18.065 20.266 Atomic orbital electron populations 1.21700 0.92629 1.02075 1.02314 1.21849 0.96838 0.95965 0.93627 1.21776 1.01114 0.94218 1.02334 1.22030 0.87551 0.94239 0.96296 1.48548 1.29761 1.43816 1.11983 1.20795 0.84862 0.77611 0.84860 1.90679 1.72954 1.62666 1.20091 1.20713 0.92697 0.97903 1.00627 0.86954 1.21114 0.99103 0.94291 0.99329 1.20613 0.89465 1.02211 0.94202 1.25158 0.98534 0.88313 0.97311 1.74134 1.10565 1.18064 1.15731 1.74408 1.12731 1.21866 1.10686 1.27129 0.98263 0.85803 1.01336 1.46527 1.27197 1.11241 1.30707 1.22817 0.98933 0.73817 1.05738 1.21455 0.92133 1.04481 0.97061 1.23240 1.00592 1.01469 0.78982 1.21488 0.93360 0.93005 0.85557 0.92069 1.42650 1.87963 1.05932 1.01110 1.19012 1.40226 0.93426 0.83128 0.91976 1.25385 1.02747 1.01961 0.94731 1.69869 1.59119 1.36136 0.98000 0.85637 0.78385 0.81535 0.77561 1.20172 1.23137 1.17251 0.90676 0.93021 0.92673 0.92197 0.93114 0.90336 0.91800 0.90716 0.89739 0.92761 0.86642 0.87495 0.72310 0.86275 0.83656 0.87906 0.92047 0.90358 0.90149 0.79280 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.48 71.98 0.61 -2.38 16 2 C -0.08 -1.97 0.85 -50.99 -0.04 -2.01 16 3 C -0.14 -3.06 7.54 71.98 0.54 -2.52 16 4 C 0.12 2.82 6.05 86.73 0.52 3.34 16 5 N -0.61 -14.40 3.32 -811.35 -2.70 -17.10 16 6 C 0.53 12.73 6.40 87.66 0.56 13.29 16 7 O -0.58 -18.26 16.86 -3.03 -0.05 -18.31 16 8 C -0.10 -1.66 1.49 -12.90 -0.02 -1.68 16 9 H 0.11 1.49 6.37 -2.38 -0.02 1.47 16 10 C -0.10 -1.88 4.90 30.15 0.15 -1.73 16 11 C -0.03 -0.44 6.02 30.45 0.18 -0.26 16 12 C 0.18 3.93 7.03 138.83 0.98 4.90 16 13 N -0.35 -10.37 12.23 -50.00 -0.61 -10.98 16 14 N -0.36 -9.99 12.25 -60.28 -0.74 -10.73 16 15 C 0.16 2.82 12.83 180.25 2.31 5.13 16 16 N -0.47 -7.41 2.70 -515.32 -1.39 -8.80 16 17 C 0.11 0.81 6.54 86.40 0.56 1.38 16 18 C -0.11 -1.48 4.55 30.12 0.14 -1.34 16 19 C 0.08 2.06 5.50 86.93 0.48 2.54 16 20 C 0.18 5.37 2.97 46.46 0.14 5.51 16 21 H 0.06 2.08 7.99 -2.39 -0.02 2.06 16 22 N -0.73 -28.28 4.95 -316.01 -1.56 -29.84 16 23 C -0.23 -11.30 10.44 84.03 0.88 -10.43 16 24 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 25 C -0.06 -3.02 5.50 84.86 0.47 -2.55 16 26 N -0.98 -58.64 13.97 21.65 0.30 -58.34 16 27 Si 0.94 40.88 27.74 68.60 1.90 42.78 16 28 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 29 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 30 H -0.25 -9.47 6.52 99.48 0.65 -8.82 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 34 H 0.06 1.30 7.44 -2.39 -0.02 1.28 16 35 H 0.05 1.30 6.76 -2.39 -0.02 1.29 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.55 7.82 -2.39 -0.02 1.53 16 38 H 0.07 1.61 7.84 -2.39 -0.02 1.59 16 39 H 0.08 1.66 7.97 -2.39 -0.02 1.64 16 40 H 0.05 1.27 7.91 -2.39 -0.02 1.25 16 41 H 0.12 1.51 7.89 -2.39 -0.02 1.49 16 42 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.26 1.63 8.06 -2.91 -0.02 1.61 16 44 H 0.12 0.57 7.87 -2.39 -0.02 0.55 16 45 H 0.15 0.09 8.13 -2.39 -0.02 0.07 16 46 H 0.10 1.16 7.97 -2.39 -0.02 1.14 16 47 H 0.06 1.13 8.07 -2.39 -0.02 1.11 16 48 H 0.08 1.88 7.71 -2.39 -0.02 1.86 16 49 H 0.08 1.96 7.58 -2.39 -0.02 1.94 16 50 H 0.37 13.77 3.32 -92.71 -0.31 13.46 16 51 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -77.20 395.61 4.17 -73.03 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.56 Total: 27.08 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 8.46 Total: 11.20 kcal Atomic # 7 Polarization: -129.08 SS G_CDS: -6.70 Total: -135.78 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.05 Total: -18.31 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.90 Total: 42.78 kcal Total: -77.20 4.17 -73.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996068432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.774 kcal (2) G-P(sol) polarization free energy of solvation -77.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds