Wall clock time and date at job start Wed Apr 1 2020 05:15:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.33475 * 125.49947 * 2 1
4 4 C 1.30330 * 109.72744 * 179.97438 * 3 2 1
5 5 N 1.34676 * 108.04049 * 0.07460 * 4 3 2
6 6 N 1.30972 * 125.49684 * 179.97438 * 2 1 3
7 7 C 1.46302 * 125.04184 * 179.85173 * 5 4 3
8 8 C 1.53311 * 108.79389 * 342.94847 * 7 5 4
9 9 H 1.09001 * 109.45379 * 290.12815 * 8 7 5
10 10 C 1.50697 * 109.49120 * 170.13151 * 8 7 5
11 11 O 1.21280 * 119.99980 * 265.62257 * 10 8 7
12 12 N 1.34773 * 120.00190 * 85.62213 * 10 8 7
13 13 C 1.47026 * 125.64908 * 5.26934 * 12 10 8
14 14 C 1.54320 * 107.27208 * 181.02149 * 13 12 10
15 15 H 1.08998 * 110.71786 * 263.82566 * 14 13 12
16 16 N 1.46498 * 110.72106 * 140.73012 * 14 13 12
17 17 C 1.36940 * 119.99723 * 86.44987 * 16 14 13
18 18 H 1.08002 * 120.00187 * 0.02562 * 17 16 14
19 19 C 1.38819 * 119.99925 * 179.97438 * 17 16 14
20 20 N 1.31618 * 119.99923 * 0.02562 * 19 17 16
21 21 Si 1.86800 * 119.99936 * 180.02562 * 19 17 16
22 22 H 1.48498 * 109.46838 * 90.00165 * 21 19 17
23 23 H 1.48498 * 109.46946 * 210.00562 * 21 19 17
24 24 H 1.48503 * 109.47175 * 330.00547 * 21 19 17
25 25 C 1.55158 * 102.94334 * 22.19030 * 14 13 12
26 26 C 1.52999 * 111.00381 * 82.57020 * 25 14 13
27 27 C 1.53000 * 111.00329 * 206.42405 * 25 14 13
28 28 C 1.47427 * 125.64799 * 184.95835 * 12 10 8
29 29 C 1.53159 * 109.47277 * 50.11833 * 8 7 5
30 30 C 1.50924 * 127.90270 * 180.02562 * 4 3 2
31 31 H 1.09003 * 109.46804 * 90.03062 * 1 2 3
32 32 H 1.08992 * 109.47371 * 210.02918 * 1 2 3
33 33 H 1.08996 * 109.46963 * 330.02920 * 1 2 3
34 34 H 1.09001 * 109.58681 * 102.76849 * 7 5 4
35 35 H 1.09002 * 109.58365 * 223.05088 * 7 5 4
36 36 H 1.09002 * 109.87786 * 300.44060 * 13 12 10
37 37 H 1.09001 * 109.88220 * 61.59814 * 13 12 10
38 38 H 0.97002 * 120.00301 * 266.45553 * 16 14 13
39 39 H 0.96991 * 119.99668 * 179.97438 * 20 19 17
40 40 H 1.09006 * 109.46541 * 60.00361 * 26 25 14
41 41 H 1.09003 * 109.47328 * 179.97438 * 26 25 14
42 42 H 1.08991 * 109.47287 * 300.00406 * 26 25 14
43 43 H 1.08999 * 109.47133 * 60.00414 * 27 25 14
44 44 H 1.09007 * 109.46931 * 179.97438 * 27 25 14
45 45 H 1.08999 * 109.47242 * 300.00101 * 27 25 14
46 46 H 1.09002 * 110.36286 * 274.74696 * 28 12 10
47 47 H 1.08992 * 110.36832 * 37.06929 * 28 12 10
48 48 H 1.08999 * 109.50427 * 170.90714 * 29 8 7
49 49 H 1.09001 * 109.50532 * 50.81943 * 29 8 7
50 50 H 1.08998 * 109.71952 * 44.44273 * 30 4 3
51 51 H 1.08999 * 109.71718 * 283.79352 * 30 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2821 1.0866 0.0000
4 6 3.5363 0.7324 0.0005
5 7 3.5896 -0.6133 -0.0007
6 7 2.2675 -1.0663 0.0005
7 6 4.8197 -1.4053 -0.0038
8 6 5.9854 -0.5056 -0.4307
9 1 5.8838 -0.2567 -1.4871
10 6 7.2877 -1.2305 -0.2084
11 8 7.9045 -1.0666 0.8229
12 7 7.7670 -2.0608 -1.1556
13 6 7.1831 -2.2676 -2.4890
14 6 8.0508 -3.3200 -3.2109
15 1 8.7895 -2.8375 -3.8508
16 7 7.2136 -4.2367 -3.9888
17 6 6.8502 -3.9128 -5.2687
18 1 7.1811 -2.9818 -5.7049
19 6 6.0574 -4.7816 -6.0061
20 7 5.6546 -5.9164 -5.4748
21 14 5.5623 -4.3401 -7.7523
22 1 6.5799 -4.8587 -8.7014
23 1 4.2426 -4.9469 -8.0610
24 1 5.4709 -2.8636 -7.8827
25 6 8.7426 -4.0638 -2.0380
26 6 7.8245 -5.1385 -1.4525
27 6 10.0764 -4.6676 -2.4822
28 6 8.9672 -2.9075 -1.0285
29 6 5.9686 0.7807 0.4006
30 6 4.7523 1.6264 0.0013
31 1 -0.3633 -0.0005 -1.0277
32 1 -0.3634 -0.8896 0.5142
33 1 -0.3633 0.8902 0.5134
34 1 5.0060 -1.7948 0.9971
35 1 4.7194 -2.2334 -0.7054
36 1 6.1605 -2.6326 -2.3933
37 1 7.1941 -1.3317 -3.0476
38 1 6.9166 -5.0730 -3.5972
39 1 5.1003 -6.5232 -5.9898
40 1 7.5740 -5.8636 -2.2269
41 1 8.3342 -5.6446 -0.6326
42 1 6.9113 -4.6734 -1.0812
43 1 10.7368 -3.8734 -2.8303
44 1 10.5402 -5.1826 -1.6408
45 1 9.9027 -5.3766 -3.2916
46 1 9.8607 -2.3406 -1.2902
47 1 9.0491 -3.2998 -0.0150
48 1 6.8818 1.3460 0.2148
49 1 5.9053 0.5290 1.4593
50 1 4.6143 2.4344 0.7198
51 1 4.9041 2.0415 -0.9951
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000996084167.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:15:52
Heat of formation + Delta-G solvation = 59.993670 kcal
Electronic energy + Delta-G solvation = -31880.277873 eV
Core-core repulsion = 27816.325364 eV
Total energy + Delta-G solvation = -4063.952508 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-42.45349 -40.42020 -38.51453 -36.62720 -34.28474 -33.43024 -33.25635 -32.06882
-30.92485 -29.90820 -28.63431 -27.67810 -27.10360 -26.40049 -24.51782 -24.05953
-23.19646 -21.57036 -20.82878 -19.96491 -19.07316 -18.59875 -17.36449 -17.16878
-16.89747 -16.22983 -15.96451 -15.35880 -15.17349 -14.71747 -14.45937 -14.35628
-14.11771 -14.00401 -13.73161 -13.55845 -13.18270 -13.10551 -12.82250 -12.72352
-12.57405 -12.54551 -12.29859 -12.14151 -12.05159 -11.88193 -11.64975 -11.47456
-11.36449 -11.12831 -11.11384 -10.97055 -10.67394 -10.60045 -10.30692 -10.12736
-10.00111 -9.88680 -9.76783 -9.73599 -9.35865 -9.08494 -8.51912 -7.18295
-5.93416 -3.24397 1.53110 2.00126 2.58241 2.78698 2.97090 3.33886
3.39783 3.41430 3.74979 4.05967 4.17552 4.26685 4.45642 4.57912
4.63929 4.72890 4.88493 4.94633 4.96665 5.03982 5.08312 5.17069
5.28733 5.39416 5.41444 5.43708 5.48213 5.56421 5.58114 5.63727
5.66901 5.70176 5.72943 5.79946 5.85451 5.93574 6.01293 6.11201
6.19468 6.25659 6.26557 6.27692 6.38898 6.45408 6.52127 6.63931
6.67225 6.77403 7.54124 7.57962 8.05471 8.07581 8.24747 9.37107
9.90011 10.24679 11.28462
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.008368 B = 0.003721 C = 0.002841
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3345.154014 B = 7523.464735 C = 9854.613402
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 C 0.214 3.786
3 N -0.540 5.540
4 C 0.277 3.723
5 N -0.371 5.371
6 N -0.309 5.309
7 C 0.143 3.857
8 C -0.121 4.121
9 H 0.107 0.893
10 C 0.538 3.462
11 O -0.543 6.543
12 N -0.606 5.606
13 C 0.068 3.932
14 C 0.182 3.818
15 H 0.067 0.933
16 N -0.711 5.711
17 C -0.252 4.252
18 H 0.072 0.928
19 C -0.005 4.005
20 N -0.928 5.928
21 Si 0.906 3.094
22 H -0.288 1.288
23 H -0.291 1.291
24 H -0.281 1.281
25 C -0.086 4.086
26 C -0.132 4.132
27 C -0.129 4.129
28 C 0.118 3.882
29 C -0.107 4.107
30 C -0.040 4.040
31 H 0.083 0.917
32 H 0.081 0.919
33 H 0.084 0.916
34 H 0.094 0.906
35 H 0.106 0.894
36 H 0.073 0.927
37 H 0.061 0.939
38 H 0.390 0.610
39 H 0.258 0.742
40 H 0.073 0.927
41 H 0.049 0.951
42 H 0.052 0.948
43 H 0.053 0.947
44 H 0.051 0.949
45 H 0.068 0.932
46 H 0.068 0.932
47 H 0.074 0.926
48 H 0.093 0.907
49 H 0.083 0.917
50 H 0.108 0.892
51 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.889 11.051 11.780 16.177
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.068 4.068
3 N -0.268 5.268
4 C 0.001 3.999
5 N -0.162 5.162
6 N -0.138 5.138
7 C 0.021 3.979
8 C -0.143 4.143
9 H 0.125 0.875
10 C 0.325 3.675
11 O -0.420 6.420
12 N -0.338 5.338
13 C -0.058 4.058
14 C 0.069 3.931
15 H 0.085 0.915
16 N -0.353 5.353
17 C -0.383 4.383
18 H 0.090 0.910
19 C -0.202 4.202
20 N -0.575 5.575
21 Si 0.737 3.263
22 H -0.215 1.215
23 H -0.217 1.217
24 H -0.207 1.207
25 C -0.087 4.087
26 C -0.190 4.190
27 C -0.187 4.187
28 C -0.005 4.005
29 C -0.145 4.145
30 C -0.080 4.080
31 H 0.102 0.898
32 H 0.099 0.901
33 H 0.103 0.897
34 H 0.112 0.888
35 H 0.124 0.876
36 H 0.092 0.908
37 H 0.079 0.921
38 H 0.227 0.773
39 H 0.067 0.933
40 H 0.092 0.908
41 H 0.068 0.932
42 H 0.071 0.929
43 H 0.072 0.928
44 H 0.070 0.930
45 H 0.087 0.913
46 H 0.086 0.914
47 H 0.093 0.907
48 H 0.112 0.888
49 H 0.102 0.898
50 H 0.126 0.874
51 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 0.791 10.720 12.177 16.243
hybrid contribution -0.293 -0.126 -1.079 1.125
sum 0.498 10.594 11.098 15.351
Atomic orbital electron populations
1.20066 0.83892 1.03828 1.03746 1.24421 0.98246 0.85523 0.98593
1.70160 0.99794 1.30859 1.26008 1.24290 0.95028 0.84005 0.96593
1.50082 1.05594 1.05796 1.54693 1.77997 0.86391 1.22462 1.26931
1.21615 0.78170 0.93715 1.04444 1.21659 0.92551 0.96502 1.03633
0.87481 1.19586 0.86002 0.79131 0.82819 1.90701 1.60233 1.63925
1.27188 1.48548 1.28358 1.41289 1.15625 1.23467 0.99943 1.01102
0.81247 1.21188 0.91603 0.89792 0.90515 0.91543 1.42532 1.58998
1.20973 1.12773 1.19231 1.26162 1.03179 0.89744 0.91043 1.24747
1.00266 0.96618 0.98540 1.69642 1.40033 1.10723 1.37090 0.86216
0.77791 0.77665 0.84634 1.21534 1.21683 1.20685 1.22028 0.96738
0.94557 0.95396 1.21648 0.98621 0.98235 1.00479 1.21650 0.94812
1.00943 1.01302 1.22395 0.87237 0.90772 1.00066 1.21589 0.98375
0.93818 1.00767 1.20431 0.86688 0.95934 1.04946 0.89849 0.90065
0.89709 0.88794 0.87593 0.90829 0.92094 0.77277 0.93252 0.90806
0.93194 0.92873 0.92761 0.93023 0.91252 0.91403 0.90742 0.88805
0.89794 0.87404 0.87979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.55 10.51 36.01 0.38 -0.18 16
2 C 0.21 3.07 8.15 -156.43 -1.27 1.80 16
3 N -0.54 -7.86 11.18 -8.03 -0.09 -7.95 16
4 C 0.28 3.64 7.72 -155.78 -1.20 2.44 16
5 N -0.37 -5.30 4.04 -58.29 -0.24 -5.53 16
6 N -0.31 -4.93 12.74 32.50 0.41 -4.52 16
7 C 0.14 1.80 6.58 -3.99 -0.03 1.77 16
8 C -0.12 -1.37 2.10 -91.53 -0.19 -1.56 16
9 H 0.11 1.18 7.27 -51.93 -0.38 0.80 16
10 C 0.54 7.29 6.92 -10.99 -0.08 7.21 16
11 O -0.54 -8.67 16.57 5.56 0.09 -8.57 16
12 N -0.61 -8.36 3.31 -170.38 -0.56 -8.92 16
13 C 0.07 1.04 5.52 -3.06 -0.02 1.03 16
14 C 0.18 3.10 2.84 -66.10 -0.19 2.91 16
15 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16
16 N -0.71 -15.64 5.08 -51.65 -0.26 -15.90 16
17 C -0.25 -6.36 9.98 -15.06 -0.15 -6.51 16
18 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16
19 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16
20 N -0.93 -26.27 13.06 55.49 0.72 -25.54 16
21 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16
22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
25 C -0.09 -1.22 0.87 -152.24 -0.13 -1.36 16
26 C -0.13 -1.98 7.95 37.16 0.30 -1.68 16
27 C -0.13 -1.69 8.68 37.16 0.32 -1.36 16
28 C 0.12 1.57 5.83 -2.41 -0.01 1.55 16
29 C -0.11 -1.01 4.66 -26.42 -0.12 -1.13 16
30 C -0.04 -0.36 6.34 -27.55 -0.17 -0.54 16
31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16
34 H 0.09 1.14 8.12 -51.93 -0.42 0.72 16
35 H 0.11 1.42 7.60 -51.93 -0.39 1.03 16
36 H 0.07 1.24 7.48 -51.93 -0.39 0.85 16
37 H 0.06 0.89 8.00 -51.93 -0.42 0.47 16
38 H 0.39 9.16 5.28 -40.82 -0.22 8.94 16
39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
40 H 0.07 1.27 6.35 -51.93 -0.33 0.94 16
41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
42 H 0.05 0.82 7.91 -51.93 -0.41 0.41 16
43 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16
44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
46 H 0.07 0.85 7.99 -51.93 -0.41 0.43 16
47 H 0.07 0.99 8.01 -51.93 -0.42 0.58 16
48 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16
49 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16
50 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16
51 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16
LS Contribution 404.59 15.07 6.10 6.10
Total: -1.00 -31.79 404.59 -9.91 -41.70
By element:
Atomic # 1 Polarization: 17.14 SS G_CDS: -8.39 Total: 8.75 kcal
Atomic # 6 Polarization: 6.86 SS G_CDS: -2.67 Total: 4.19 kcal
Atomic # 7 Polarization: -68.36 SS G_CDS: -0.01 Total: -68.37 kcal
Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.57 kcal
Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -31.79 -9.91 -41.70 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996084167.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.696 kcal
(2) G-P(sol) polarization free energy of solvation -31.793 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.903 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.994 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds