Wall clock time and date at job start Wed Apr 1 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33475 * 125.49947 * 2 1 4 4 C 1.30330 * 109.72744 * 179.97438 * 3 2 1 5 5 N 1.34676 * 108.04049 * 0.07460 * 4 3 2 6 6 N 1.30972 * 125.49684 * 179.97438 * 2 1 3 7 7 C 1.46302 * 125.04184 * 179.85173 * 5 4 3 8 8 C 1.53311 * 108.79389 * 342.94847 * 7 5 4 9 9 H 1.09001 * 109.45379 * 290.12815 * 8 7 5 10 10 C 1.50697 * 109.49120 * 170.13151 * 8 7 5 11 11 O 1.21280 * 119.99980 * 265.62257 * 10 8 7 12 12 N 1.34773 * 120.00190 * 85.62213 * 10 8 7 13 13 C 1.47026 * 125.64908 * 5.26934 * 12 10 8 14 14 C 1.54320 * 107.27208 * 181.02149 * 13 12 10 15 15 H 1.08998 * 110.71786 * 263.82566 * 14 13 12 16 16 N 1.46498 * 110.72106 * 140.73012 * 14 13 12 17 17 C 1.36940 * 119.99723 * 86.44987 * 16 14 13 18 18 H 1.08002 * 120.00187 * 0.02562 * 17 16 14 19 19 C 1.38819 * 119.99925 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99923 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99936 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46838 * 90.00165 * 21 19 17 23 23 H 1.48498 * 109.46946 * 210.00562 * 21 19 17 24 24 H 1.48503 * 109.47175 * 330.00547 * 21 19 17 25 25 C 1.55158 * 102.94334 * 22.19030 * 14 13 12 26 26 C 1.52999 * 111.00381 * 82.57020 * 25 14 13 27 27 C 1.53000 * 111.00329 * 206.42405 * 25 14 13 28 28 C 1.47427 * 125.64799 * 184.95835 * 12 10 8 29 29 C 1.53159 * 109.47277 * 50.11833 * 8 7 5 30 30 C 1.50924 * 127.90270 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.46804 * 90.03062 * 1 2 3 32 32 H 1.08992 * 109.47371 * 210.02918 * 1 2 3 33 33 H 1.08996 * 109.46963 * 330.02920 * 1 2 3 34 34 H 1.09001 * 109.58681 * 102.76849 * 7 5 4 35 35 H 1.09002 * 109.58365 * 223.05088 * 7 5 4 36 36 H 1.09002 * 109.87786 * 300.44060 * 13 12 10 37 37 H 1.09001 * 109.88220 * 61.59814 * 13 12 10 38 38 H 0.97002 * 120.00301 * 266.45553 * 16 14 13 39 39 H 0.96991 * 119.99668 * 179.97438 * 20 19 17 40 40 H 1.09006 * 109.46541 * 60.00361 * 26 25 14 41 41 H 1.09003 * 109.47328 * 179.97438 * 26 25 14 42 42 H 1.08991 * 109.47287 * 300.00406 * 26 25 14 43 43 H 1.08999 * 109.47133 * 60.00414 * 27 25 14 44 44 H 1.09007 * 109.46931 * 179.97438 * 27 25 14 45 45 H 1.08999 * 109.47242 * 300.00101 * 27 25 14 46 46 H 1.09002 * 110.36286 * 274.74696 * 28 12 10 47 47 H 1.08992 * 110.36832 * 37.06929 * 28 12 10 48 48 H 1.08999 * 109.50427 * 170.90714 * 29 8 7 49 49 H 1.09001 * 109.50532 * 50.81943 * 29 8 7 50 50 H 1.08998 * 109.71952 * 44.44273 * 30 4 3 51 51 H 1.08999 * 109.71718 * 283.79352 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0866 0.0000 4 6 3.5363 0.7324 0.0005 5 7 3.5896 -0.6133 -0.0007 6 7 2.2675 -1.0663 0.0005 7 6 4.8197 -1.4053 -0.0038 8 6 5.9854 -0.5056 -0.4307 9 1 5.8838 -0.2567 -1.4871 10 6 7.2877 -1.2305 -0.2084 11 8 7.9045 -1.0666 0.8229 12 7 7.7670 -2.0608 -1.1556 13 6 7.1831 -2.2676 -2.4890 14 6 8.0508 -3.3200 -3.2109 15 1 8.7895 -2.8375 -3.8508 16 7 7.2136 -4.2367 -3.9888 17 6 6.8502 -3.9128 -5.2687 18 1 7.1811 -2.9818 -5.7049 19 6 6.0574 -4.7816 -6.0061 20 7 5.6546 -5.9164 -5.4748 21 14 5.5623 -4.3401 -7.7523 22 1 6.5799 -4.8587 -8.7014 23 1 4.2426 -4.9469 -8.0610 24 1 5.4709 -2.8636 -7.8827 25 6 8.7426 -4.0638 -2.0380 26 6 7.8245 -5.1385 -1.4525 27 6 10.0764 -4.6676 -2.4822 28 6 8.9672 -2.9075 -1.0285 29 6 5.9686 0.7807 0.4006 30 6 4.7523 1.6264 0.0013 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3634 -0.8896 0.5142 33 1 -0.3633 0.8902 0.5134 34 1 5.0060 -1.7948 0.9971 35 1 4.7194 -2.2334 -0.7054 36 1 6.1605 -2.6326 -2.3933 37 1 7.1941 -1.3317 -3.0476 38 1 6.9166 -5.0730 -3.5972 39 1 5.1003 -6.5232 -5.9898 40 1 7.5740 -5.8636 -2.2269 41 1 8.3342 -5.6446 -0.6326 42 1 6.9113 -4.6734 -1.0812 43 1 10.7368 -3.8734 -2.8303 44 1 10.5402 -5.1826 -1.6408 45 1 9.9027 -5.3766 -3.2916 46 1 9.8607 -2.3406 -1.2902 47 1 9.0491 -3.2998 -0.0150 48 1 6.8818 1.3460 0.2148 49 1 5.9053 0.5290 1.4593 50 1 4.6143 2.4344 0.7198 51 1 4.9041 2.0415 -0.9951 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996084167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:52 Heat of formation + Delta-G solvation = 59.993670 kcal Electronic energy + Delta-G solvation = -31880.277873 eV Core-core repulsion = 27816.325364 eV Total energy + Delta-G solvation = -4063.952508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.45349 -40.42020 -38.51453 -36.62720 -34.28474 -33.43024 -33.25635 -32.06882 -30.92485 -29.90820 -28.63431 -27.67810 -27.10360 -26.40049 -24.51782 -24.05953 -23.19646 -21.57036 -20.82878 -19.96491 -19.07316 -18.59875 -17.36449 -17.16878 -16.89747 -16.22983 -15.96451 -15.35880 -15.17349 -14.71747 -14.45937 -14.35628 -14.11771 -14.00401 -13.73161 -13.55845 -13.18270 -13.10551 -12.82250 -12.72352 -12.57405 -12.54551 -12.29859 -12.14151 -12.05159 -11.88193 -11.64975 -11.47456 -11.36449 -11.12831 -11.11384 -10.97055 -10.67394 -10.60045 -10.30692 -10.12736 -10.00111 -9.88680 -9.76783 -9.73599 -9.35865 -9.08494 -8.51912 -7.18295 -5.93416 -3.24397 1.53110 2.00126 2.58241 2.78698 2.97090 3.33886 3.39783 3.41430 3.74979 4.05967 4.17552 4.26685 4.45642 4.57912 4.63929 4.72890 4.88493 4.94633 4.96665 5.03982 5.08312 5.17069 5.28733 5.39416 5.41444 5.43708 5.48213 5.56421 5.58114 5.63727 5.66901 5.70176 5.72943 5.79946 5.85451 5.93574 6.01293 6.11201 6.19468 6.25659 6.26557 6.27692 6.38898 6.45408 6.52127 6.63931 6.67225 6.77403 7.54124 7.57962 8.05471 8.07581 8.24747 9.37107 9.90011 10.24679 11.28462 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008368 B = 0.003721 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.154014 B = 7523.464735 C = 9854.613402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.214 3.786 3 N -0.540 5.540 4 C 0.277 3.723 5 N -0.371 5.371 6 N -0.309 5.309 7 C 0.143 3.857 8 C -0.121 4.121 9 H 0.107 0.893 10 C 0.538 3.462 11 O -0.543 6.543 12 N -0.606 5.606 13 C 0.068 3.932 14 C 0.182 3.818 15 H 0.067 0.933 16 N -0.711 5.711 17 C -0.252 4.252 18 H 0.072 0.928 19 C -0.005 4.005 20 N -0.928 5.928 21 Si 0.906 3.094 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.086 4.086 26 C -0.132 4.132 27 C -0.129 4.129 28 C 0.118 3.882 29 C -0.107 4.107 30 C -0.040 4.040 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.390 0.610 39 H 0.258 0.742 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.108 0.892 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 11.051 11.780 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.068 4.068 3 N -0.268 5.268 4 C 0.001 3.999 5 N -0.162 5.162 6 N -0.138 5.138 7 C 0.021 3.979 8 C -0.143 4.143 9 H 0.125 0.875 10 C 0.325 3.675 11 O -0.420 6.420 12 N -0.338 5.338 13 C -0.058 4.058 14 C 0.069 3.931 15 H 0.085 0.915 16 N -0.353 5.353 17 C -0.383 4.383 18 H 0.090 0.910 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.737 3.263 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.087 4.087 26 C -0.190 4.190 27 C -0.187 4.187 28 C -0.005 4.005 29 C -0.145 4.145 30 C -0.080 4.080 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.227 0.773 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.112 0.888 49 H 0.102 0.898 50 H 0.126 0.874 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.791 10.720 12.177 16.243 hybrid contribution -0.293 -0.126 -1.079 1.125 sum 0.498 10.594 11.098 15.351 Atomic orbital electron populations 1.20066 0.83892 1.03828 1.03746 1.24421 0.98246 0.85523 0.98593 1.70160 0.99794 1.30859 1.26008 1.24290 0.95028 0.84005 0.96593 1.50082 1.05594 1.05796 1.54693 1.77997 0.86391 1.22462 1.26931 1.21615 0.78170 0.93715 1.04444 1.21659 0.92551 0.96502 1.03633 0.87481 1.19586 0.86002 0.79131 0.82819 1.90701 1.60233 1.63925 1.27188 1.48548 1.28358 1.41289 1.15625 1.23467 0.99943 1.01102 0.81247 1.21188 0.91603 0.89792 0.90515 0.91543 1.42532 1.58998 1.20973 1.12773 1.19231 1.26162 1.03179 0.89744 0.91043 1.24747 1.00266 0.96618 0.98540 1.69642 1.40033 1.10723 1.37090 0.86216 0.77791 0.77665 0.84634 1.21534 1.21683 1.20685 1.22028 0.96738 0.94557 0.95396 1.21648 0.98621 0.98235 1.00479 1.21650 0.94812 1.00943 1.01302 1.22395 0.87237 0.90772 1.00066 1.21589 0.98375 0.93818 1.00767 1.20431 0.86688 0.95934 1.04946 0.89849 0.90065 0.89709 0.88794 0.87593 0.90829 0.92094 0.77277 0.93252 0.90806 0.93194 0.92873 0.92761 0.93023 0.91252 0.91403 0.90742 0.88805 0.89794 0.87404 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 36.01 0.38 -0.18 16 2 C 0.21 3.07 8.15 -156.43 -1.27 1.80 16 3 N -0.54 -7.86 11.18 -8.03 -0.09 -7.95 16 4 C 0.28 3.64 7.72 -155.78 -1.20 2.44 16 5 N -0.37 -5.30 4.04 -58.29 -0.24 -5.53 16 6 N -0.31 -4.93 12.74 32.50 0.41 -4.52 16 7 C 0.14 1.80 6.58 -3.99 -0.03 1.77 16 8 C -0.12 -1.37 2.10 -91.53 -0.19 -1.56 16 9 H 0.11 1.18 7.27 -51.93 -0.38 0.80 16 10 C 0.54 7.29 6.92 -10.99 -0.08 7.21 16 11 O -0.54 -8.67 16.57 5.56 0.09 -8.57 16 12 N -0.61 -8.36 3.31 -170.38 -0.56 -8.92 16 13 C 0.07 1.04 5.52 -3.06 -0.02 1.03 16 14 C 0.18 3.10 2.84 -66.10 -0.19 2.91 16 15 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16 16 N -0.71 -15.64 5.08 -51.65 -0.26 -15.90 16 17 C -0.25 -6.36 9.98 -15.06 -0.15 -6.51 16 18 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 19 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 20 N -0.93 -26.27 13.06 55.49 0.72 -25.54 16 21 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.09 -1.22 0.87 -152.24 -0.13 -1.36 16 26 C -0.13 -1.98 7.95 37.16 0.30 -1.68 16 27 C -0.13 -1.69 8.68 37.16 0.32 -1.36 16 28 C 0.12 1.57 5.83 -2.41 -0.01 1.55 16 29 C -0.11 -1.01 4.66 -26.42 -0.12 -1.13 16 30 C -0.04 -0.36 6.34 -27.55 -0.17 -0.54 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.14 8.12 -51.93 -0.42 0.72 16 35 H 0.11 1.42 7.60 -51.93 -0.39 1.03 16 36 H 0.07 1.24 7.48 -51.93 -0.39 0.85 16 37 H 0.06 0.89 8.00 -51.93 -0.42 0.47 16 38 H 0.39 9.16 5.28 -40.82 -0.22 8.94 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.07 1.27 6.35 -51.93 -0.33 0.94 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.82 7.91 -51.93 -0.41 0.41 16 43 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.07 0.85 7.99 -51.93 -0.41 0.43 16 47 H 0.07 0.99 8.01 -51.93 -0.42 0.58 16 48 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 49 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 50 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 404.59 15.07 6.10 6.10 Total: -1.00 -31.79 404.59 -9.91 -41.70 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -8.39 Total: 8.75 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.67 Total: 4.19 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -0.01 Total: -68.37 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.57 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.79 -9.91 -41.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996084167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.696 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds