Wall clock time and date at job start Wed Apr 1 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33475 * 125.49947 * 2 1 4 4 C 1.30330 * 109.72744 * 179.97438 * 3 2 1 5 5 N 1.34676 * 108.04049 * 0.07460 * 4 3 2 6 6 N 1.30972 * 125.49684 * 179.97438 * 2 1 3 7 7 C 1.46302 * 125.04184 * 179.85173 * 5 4 3 8 8 C 1.53311 * 108.79389 * 342.94847 * 7 5 4 9 9 H 1.09001 * 109.45379 * 290.12815 * 8 7 5 10 10 C 1.50697 * 109.49120 * 170.13151 * 8 7 5 11 11 O 1.21280 * 119.99980 * 265.62257 * 10 8 7 12 12 N 1.34773 * 120.00190 * 85.62213 * 10 8 7 13 13 C 1.47026 * 125.64908 * 5.26934 * 12 10 8 14 14 C 1.54320 * 107.27208 * 181.02149 * 13 12 10 15 15 H 1.08998 * 110.71786 * 263.82566 * 14 13 12 16 16 N 1.46498 * 110.72106 * 140.73012 * 14 13 12 17 17 C 1.36940 * 119.99723 * 86.44987 * 16 14 13 18 18 H 1.08002 * 120.00187 * 0.02562 * 17 16 14 19 19 C 1.38819 * 119.99925 * 179.97438 * 17 16 14 20 20 N 1.31618 * 119.99923 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99936 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46838 * 90.00165 * 21 19 17 23 23 H 1.48498 * 109.46946 * 210.00562 * 21 19 17 24 24 H 1.48503 * 109.47175 * 330.00547 * 21 19 17 25 25 C 1.55158 * 102.94334 * 22.19030 * 14 13 12 26 26 C 1.52999 * 111.00381 * 82.57020 * 25 14 13 27 27 C 1.53000 * 111.00329 * 206.42405 * 25 14 13 28 28 C 1.47427 * 125.64799 * 184.95835 * 12 10 8 29 29 C 1.53159 * 109.47277 * 50.11833 * 8 7 5 30 30 C 1.50924 * 127.90270 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.46804 * 90.03062 * 1 2 3 32 32 H 1.08992 * 109.47371 * 210.02918 * 1 2 3 33 33 H 1.08996 * 109.46963 * 330.02920 * 1 2 3 34 34 H 1.09001 * 109.58681 * 102.76849 * 7 5 4 35 35 H 1.09002 * 109.58365 * 223.05088 * 7 5 4 36 36 H 1.09002 * 109.87786 * 300.44060 * 13 12 10 37 37 H 1.09001 * 109.88220 * 61.59814 * 13 12 10 38 38 H 0.97002 * 120.00301 * 266.45553 * 16 14 13 39 39 H 0.96991 * 119.99668 * 179.97438 * 20 19 17 40 40 H 1.09006 * 109.46541 * 60.00361 * 26 25 14 41 41 H 1.09003 * 109.47328 * 179.97438 * 26 25 14 42 42 H 1.08991 * 109.47287 * 300.00406 * 26 25 14 43 43 H 1.08999 * 109.47133 * 60.00414 * 27 25 14 44 44 H 1.09007 * 109.46931 * 179.97438 * 27 25 14 45 45 H 1.08999 * 109.47242 * 300.00101 * 27 25 14 46 46 H 1.09002 * 110.36286 * 274.74696 * 28 12 10 47 47 H 1.08992 * 110.36832 * 37.06929 * 28 12 10 48 48 H 1.08999 * 109.50427 * 170.90714 * 29 8 7 49 49 H 1.09001 * 109.50532 * 50.81943 * 29 8 7 50 50 H 1.08998 * 109.71952 * 44.44273 * 30 4 3 51 51 H 1.08999 * 109.71718 * 283.79352 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0866 0.0000 4 6 3.5363 0.7324 0.0005 5 7 3.5896 -0.6133 -0.0007 6 7 2.2675 -1.0663 0.0005 7 6 4.8197 -1.4053 -0.0038 8 6 5.9854 -0.5056 -0.4307 9 1 5.8838 -0.2567 -1.4871 10 6 7.2877 -1.2305 -0.2084 11 8 7.9045 -1.0666 0.8229 12 7 7.7670 -2.0608 -1.1556 13 6 7.1831 -2.2676 -2.4890 14 6 8.0508 -3.3200 -3.2109 15 1 8.7895 -2.8375 -3.8508 16 7 7.2136 -4.2367 -3.9888 17 6 6.8502 -3.9128 -5.2687 18 1 7.1811 -2.9818 -5.7049 19 6 6.0574 -4.7816 -6.0061 20 7 5.6546 -5.9164 -5.4748 21 14 5.5623 -4.3401 -7.7523 22 1 6.5799 -4.8587 -8.7014 23 1 4.2426 -4.9469 -8.0610 24 1 5.4709 -2.8636 -7.8827 25 6 8.7426 -4.0638 -2.0380 26 6 7.8245 -5.1385 -1.4525 27 6 10.0764 -4.6676 -2.4822 28 6 8.9672 -2.9075 -1.0285 29 6 5.9686 0.7807 0.4006 30 6 4.7523 1.6264 0.0013 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3634 -0.8896 0.5142 33 1 -0.3633 0.8902 0.5134 34 1 5.0060 -1.7948 0.9971 35 1 4.7194 -2.2334 -0.7054 36 1 6.1605 -2.6326 -2.3933 37 1 7.1941 -1.3317 -3.0476 38 1 6.9166 -5.0730 -3.5972 39 1 5.1003 -6.5232 -5.9898 40 1 7.5740 -5.8636 -2.2269 41 1 8.3342 -5.6446 -0.6326 42 1 6.9113 -4.6734 -1.0812 43 1 10.7368 -3.8734 -2.8303 44 1 10.5402 -5.1826 -1.6408 45 1 9.9027 -5.3766 -3.2916 46 1 9.8607 -2.3406 -1.2902 47 1 9.0491 -3.2998 -0.0150 48 1 6.8818 1.3460 0.2148 49 1 5.9053 0.5290 1.4593 50 1 4.6143 2.4344 0.7198 51 1 4.9041 2.0415 -0.9951 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996084167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:51 Heat of formation + Delta-G solvation = 41.238975 kcal Electronic energy + Delta-G solvation = -31881.091137 eV Core-core repulsion = 27816.325364 eV Total energy + Delta-G solvation = -4064.765773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.47441 -41.57997 -39.70724 -37.64437 -35.89566 -34.66372 -34.31157 -33.03473 -32.65648 -30.87683 -29.57196 -29.16311 -28.30433 -27.46892 -25.86106 -25.42086 -24.20927 -22.92049 -21.85543 -20.96069 -20.27728 -19.75558 -19.15100 -18.28562 -17.96661 -17.29396 -17.13124 -16.67723 -16.27133 -16.06900 -15.74567 -15.49225 -15.31459 -15.17861 -14.83992 -14.73156 -14.30080 -14.27351 -14.06787 -13.79780 -13.60942 -13.56085 -13.45449 -13.26544 -13.01210 -12.91442 -12.85805 -12.81956 -12.75161 -12.55104 -12.31592 -12.13030 -12.08994 -12.01408 -11.85934 -11.51612 -11.32347 -11.20094 -11.04214 -10.89333 -10.82413 -10.38880 -9.69697 -9.04715 -7.95252 -5.23588 0.50453 0.97165 1.48037 1.48711 1.51160 1.56134 1.76213 1.87481 2.55531 2.88255 3.10228 3.14401 3.36638 3.38252 3.55981 3.67651 3.77785 3.79074 3.80563 3.92976 4.09283 4.12989 4.17144 4.27749 4.34897 4.39530 4.42932 4.44369 4.66238 4.69796 4.71850 4.78404 4.83213 4.84366 4.85474 4.87423 4.91280 4.99914 5.04893 5.07980 5.12231 5.21403 5.25072 5.26690 5.42485 5.42805 5.50659 5.54918 5.71580 6.26536 6.41169 6.96140 7.01145 7.35340 8.09015 8.31740 9.27763 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008368 B = 0.003721 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.154014 B = 7523.464735 C = 9854.613402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.207 3.793 3 N -0.560 5.560 4 C 0.276 3.724 5 N -0.382 5.382 6 N -0.353 5.353 7 C 0.147 3.853 8 C -0.112 4.112 9 H 0.113 0.887 10 C 0.543 3.457 11 O -0.562 6.562 12 N -0.605 5.605 13 C 0.084 3.916 14 C 0.173 3.827 15 H 0.070 0.930 16 N -0.722 5.722 17 C -0.239 4.239 18 H 0.080 0.920 19 C -0.067 4.067 20 N -0.966 5.966 21 Si 0.963 3.037 22 H -0.288 1.288 23 H -0.302 1.302 24 H -0.269 1.269 25 C -0.078 4.078 26 C -0.127 4.127 27 C -0.125 4.125 28 C 0.121 3.879 29 C -0.099 4.099 30 C -0.034 4.034 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.380 0.620 39 H 0.249 0.751 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.112 0.888 49 H 0.077 0.923 50 H 0.131 0.869 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.138 13.510 12.380 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 N -0.289 5.289 4 C 0.001 3.999 5 N -0.173 5.173 6 N -0.182 5.182 7 C 0.024 3.976 8 C -0.135 4.135 9 H 0.131 0.869 10 C 0.331 3.669 11 O -0.441 6.441 12 N -0.337 5.337 13 C -0.042 4.042 14 C 0.062 3.938 15 H 0.087 0.913 16 N -0.363 5.363 17 C -0.371 4.371 18 H 0.098 0.902 19 C -0.260 4.260 20 N -0.617 5.617 21 Si 0.793 3.207 22 H -0.215 1.215 23 H -0.229 1.229 24 H -0.194 1.194 25 C -0.080 4.080 26 C -0.184 4.184 27 C -0.183 4.183 28 C -0.001 4.001 29 C -0.137 4.137 30 C -0.073 4.073 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.216 0.784 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.130 0.870 49 H 0.096 0.904 50 H 0.149 0.851 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.078 13.227 12.796 18.520 hybrid contribution -0.629 -0.855 -1.180 1.587 sum 1.450 12.372 11.616 17.032 Atomic orbital electron populations 1.20245 0.81395 1.05059 1.04715 1.25212 0.99860 0.85156 0.97242 1.70209 1.00478 1.31104 1.27134 1.25148 0.95965 0.84013 0.94823 1.50142 1.05363 1.06450 1.55326 1.77932 0.87437 1.23967 1.28876 1.21563 0.78414 0.93627 1.03994 1.21625 0.90576 0.96871 1.04402 0.86912 1.19825 0.86280 0.78673 0.82127 1.90699 1.61000 1.64607 1.27788 1.48522 1.28516 1.41500 1.15137 1.23048 0.98390 1.00802 0.82000 1.21402 0.91339 0.89851 0.91203 0.91255 1.42662 1.59666 1.21590 1.12417 1.19623 1.24097 1.02637 0.90719 0.90211 1.25426 1.01670 0.97043 1.01873 1.69789 1.41725 1.11966 1.38188 0.85302 0.76641 0.77794 0.81003 1.21508 1.22945 1.19407 1.21972 0.96927 0.94632 0.94419 1.21577 0.98628 0.97940 1.00274 1.21618 0.94289 1.00999 1.01364 1.22425 0.87581 0.90274 0.99814 1.21576 0.99388 0.92862 0.99913 1.20658 0.84380 0.95500 1.06792 0.88873 0.89219 0.88064 0.88852 0.89239 0.92766 0.90861 0.78420 0.94167 0.93549 0.90932 0.94061 0.91241 0.90830 0.93645 0.89634 0.90275 0.86988 0.90409 0.85096 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.51 71.24 0.75 -0.29 16 2 C 0.21 5.87 8.15 138.48 1.13 7.00 16 3 N -0.56 -15.75 11.18 -179.31 -2.01 -17.76 16 4 C 0.28 6.91 7.72 138.37 1.07 7.98 16 5 N -0.38 -10.85 4.04 -338.32 -1.37 -12.22 16 6 N -0.35 -11.43 12.74 -51.08 -0.65 -12.08 16 7 C 0.15 3.68 6.58 86.52 0.57 4.25 16 8 C -0.11 -2.36 2.10 -11.38 -0.02 -2.38 16 9 H 0.11 2.26 7.27 -2.39 -0.02 2.24 16 10 C 0.54 13.70 6.92 87.66 0.61 14.30 16 11 O -0.56 -16.71 16.57 -3.03 -0.05 -16.76 16 12 N -0.60 -15.60 3.31 -811.35 -2.69 -18.29 16 13 C 0.08 2.46 5.52 86.73 0.48 2.94 16 14 C 0.17 5.74 2.84 46.18 0.13 5.87 16 15 H 0.07 2.29 8.02 -2.39 -0.02 2.27 16 16 N -0.72 -32.11 5.08 -317.33 -1.61 -33.72 16 17 C -0.24 -12.04 9.98 84.03 0.84 -11.20 16 18 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 19 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 20 N -0.97 -56.41 13.06 21.65 0.28 -56.13 16 21 Si 0.96 44.10 29.55 68.60 2.03 46.13 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 C -0.08 -2.13 0.87 -50.71 -0.04 -2.18 16 26 C -0.13 -3.77 7.95 71.98 0.57 -3.20 16 27 C -0.13 -3.03 8.68 71.98 0.62 -2.40 16 28 C 0.12 2.93 5.83 86.93 0.51 3.44 16 29 C -0.10 -1.60 4.66 30.79 0.14 -1.46 16 30 C -0.03 -0.51 6.34 30.07 0.19 -0.32 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 2.30 8.12 -2.39 -0.02 2.28 16 35 H 0.09 2.51 7.60 -2.39 -0.02 2.49 16 36 H 0.05 1.84 7.48 -2.39 -0.02 1.82 16 37 H 0.07 1.99 8.00 -2.39 -0.02 1.97 16 38 H 0.38 18.45 5.28 -92.71 -0.49 17.96 16 39 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 40 H 0.05 1.64 6.35 -2.38 -0.02 1.63 16 41 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.04 1.29 7.91 -2.39 -0.02 1.28 16 43 H 0.07 1.47 8.07 -2.39 -0.02 1.45 16 44 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 45 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.09 1.82 7.99 -2.39 -0.02 1.81 16 47 H 0.08 1.90 8.01 -2.39 -0.02 1.88 16 48 H 0.11 1.47 8.12 -2.39 -0.02 1.45 16 49 H 0.08 1.39 8.11 -2.39 -0.02 1.37 16 50 H 0.13 1.43 8.14 -2.39 -0.02 1.42 16 51 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -69.70 404.59 2.39 -67.31 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.44 Total: 34.34 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 8.00 Total: 19.17 kcal Atomic # 7 Polarization: -142.15 SS G_CDS: -8.04 Total: -150.19 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.05 Total: -16.76 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -69.70 2.39 -67.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996084167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.552 kcal (2) G-P(sol) polarization free energy of solvation -69.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds