Wall clock time and date at job start Wed Apr 1 2020 05:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.29118 * 126.00772 * 2 1 4 4 N 1.29016 * 110.26059 * 179.97438 * 3 2 1 5 5 C 1.32913 * 108.63335 * 359.97438 * 4 3 2 6 6 C 1.34396 * 126.01044 * 180.02562 * 2 1 3 7 7 C 1.50535 * 129.25237 * 0.08676 * 6 2 1 8 8 C 1.53430 * 108.32588 * 163.59610 * 7 6 2 9 9 H 1.09003 * 109.46069 * 289.68770 * 8 7 6 10 10 C 1.50695 * 109.44693 * 169.73176 * 8 7 6 11 11 O 1.21287 * 120.00113 * 265.57308 * 10 8 7 12 12 N 1.34773 * 120.00260 * 85.56960 * 10 8 7 13 13 C 1.47018 * 125.64826 * 5.27070 * 12 10 8 14 14 C 1.54320 * 107.27399 * 181.01954 * 13 12 10 15 15 H 1.09003 * 110.72098 * 140.73472 * 14 13 12 16 16 N 1.46497 * 110.72785 * 263.83203 * 14 13 12 17 17 C 1.36936 * 120.00004 * 273.54737 * 16 14 13 18 18 H 1.07997 * 120.00450 * 359.97438 * 17 16 14 19 19 C 1.38818 * 120.00005 * 179.97438 * 17 16 14 20 20 N 1.31616 * 119.99914 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99808 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47212 * 90.00333 * 21 19 17 23 23 H 1.48506 * 109.46602 * 210.00061 * 21 19 17 24 24 H 1.48492 * 109.47261 * 329.99661 * 21 19 17 25 25 C 1.55155 * 102.94234 * 22.19848 * 14 13 12 26 26 C 1.53001 * 111.00913 * 82.56792 * 25 14 13 27 27 C 1.53004 * 111.00717 * 206.42317 * 25 14 13 28 28 C 1.47430 * 125.65005 * 184.96202 * 12 10 8 29 29 C 1.53107 * 109.55422 * 49.71173 * 8 7 6 30 30 C 1.50548 * 129.16604 * 180.22999 * 5 4 3 31 31 H 1.09004 * 109.47489 * 269.95984 * 1 2 3 32 32 H 1.09001 * 109.47280 * 29.95940 * 1 2 3 33 33 H 1.09002 * 109.47098 * 149.95762 * 1 2 3 34 34 H 1.09000 * 109.69567 * 43.88764 * 7 6 2 35 35 H 1.08996 * 109.72644 * 283.32292 * 7 6 2 36 36 H 1.08997 * 109.88500 * 300.44425 * 13 12 10 37 37 H 1.09005 * 109.88106 * 61.45140 * 13 12 10 38 38 H 0.97001 * 119.99934 * 93.54184 * 16 14 13 39 39 H 0.97000 * 120.00098 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.47071 * 60.00004 * 26 25 14 41 41 H 1.08999 * 109.47446 * 180.02562 * 26 25 14 42 42 H 1.08998 * 109.47091 * 300.00583 * 26 25 14 43 43 H 1.08998 * 109.46801 * 59.99621 * 27 25 14 44 44 H 1.09001 * 109.47088 * 179.97438 * 27 25 14 45 45 H 1.08994 * 109.46698 * 299.99555 * 27 25 14 46 46 H 1.08997 * 110.36698 * 274.75202 * 28 12 10 47 47 H 1.09008 * 110.36343 * 37.07304 * 28 12 10 48 48 H 1.09000 * 109.45498 * 49.97449 * 29 8 7 49 49 H 1.09004 * 109.45113 * 169.93060 * 29 8 7 50 50 H 1.09005 * 109.66453 * 43.63695 * 30 5 4 51 51 H 1.09000 * 109.69585 * 283.07077 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4658 0.6943 0.0005 5 6 3.5327 -0.6331 0.0015 6 6 2.2551 -1.0871 -0.0005 7 6 1.8722 -2.5430 -0.0029 8 6 3.1012 -3.3644 -0.4138 9 1 3.3136 -3.1967 -1.4697 10 6 2.8263 -4.8280 -0.1835 11 8 3.1696 -5.3536 0.8543 12 7 2.1990 -5.5531 -1.1306 13 6 1.8279 -5.0747 -2.4703 14 6 1.1118 -6.2370 -3.1899 15 1 0.2718 -5.8674 -3.7781 16 7 2.0491 -6.9782 -4.0374 17 6 2.2885 -6.5623 -5.3199 18 1 1.7861 -5.6881 -5.7069 19 6 3.1770 -7.2643 -6.1228 20 7 3.7890 -8.3300 -5.6515 21 14 3.5041 -6.6965 -7.8721 22 1 4.6406 -5.7408 -7.8780 23 1 3.8394 -7.8697 -8.7187 24 1 2.2923 -6.0280 -8.4103 25 6 0.6172 -7.1211 -2.0148 26 6 -0.6984 -6.5884 -1.4434 27 6 0.4723 -8.5808 -2.4499 28 6 1.7769 -6.9594 -0.9971 29 6 4.3085 -2.9342 0.4238 30 6 4.7463 -1.5239 0.0071 31 1 -0.3634 -0.0007 1.0277 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 1.0643 -2.7091 -0.7155 35 1 1.5487 -2.8399 0.9947 36 1 1.1560 -4.2206 -2.3861 37 1 2.7230 -4.7889 -3.0229 38 1 2.5002 -7.7635 -3.6900 39 1 4.4102 -8.8204 -6.2124 40 1 -1.4593 -6.5868 -2.2239 41 1 -1.0222 -7.2263 -0.6211 42 1 -0.5507 -5.5721 -1.0781 43 1 1.4380 -8.9568 -2.7877 44 1 0.1248 -9.1784 -1.6071 45 1 -0.2487 -8.6472 -3.2646 46 1 2.6005 -7.6281 -1.2475 47 1 1.4228 -7.1547 0.0151 48 1 4.0363 -2.9331 1.4792 49 1 5.1301 -3.6320 0.2615 50 1 5.4786 -1.1418 0.7184 51 1 5.1840 -1.5547 -0.9907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996210522.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:33 Heat of formation + Delta-G solvation = 69.130167 kcal Electronic energy + Delta-G solvation = -32071.873075 eV Core-core repulsion = 28008.316756 eV Total energy + Delta-G solvation = -4063.556320 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.57519 -40.30453 -38.44816 -36.50628 -35.12745 -34.02154 -33.26890 -30.85229 -30.84129 -30.51607 -28.13012 -28.03311 -26.81618 -26.48666 -24.61010 -23.90276 -23.04684 -21.69384 -21.52213 -20.12794 -19.01895 -18.54988 -17.33954 -17.26780 -17.07348 -16.65645 -15.85904 -15.50485 -14.82836 -14.63135 -14.30411 -14.19758 -14.12485 -14.00210 -13.90780 -13.63004 -13.41324 -13.15613 -13.05766 -12.71216 -12.57139 -12.39776 -12.27769 -11.95530 -11.87876 -11.74191 -11.64424 -11.53959 -11.29748 -11.12021 -11.06276 -10.95556 -10.68601 -10.65458 -10.51255 -10.29771 -10.14189 -9.92476 -9.74409 -9.60875 -9.06313 -9.01231 -8.32058 -7.13374 -5.90076 -3.20516 1.36534 2.08249 2.39245 2.75018 3.18000 3.35452 3.41047 3.42937 3.94281 4.18791 4.38509 4.46329 4.50304 4.57610 4.60741 4.66657 4.81829 4.89266 4.99121 5.00671 5.11673 5.15808 5.20519 5.27710 5.36987 5.41422 5.53107 5.59094 5.59412 5.65484 5.67799 5.80754 5.86444 5.87700 5.92708 6.03092 6.06448 6.10999 6.13455 6.17823 6.20378 6.28067 6.31569 6.35673 6.49240 6.57110 6.69231 6.84055 7.57398 7.79687 8.27439 8.33448 8.34319 9.39840 9.93880 10.28367 11.31832 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010332 B = 0.003261 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.409109 B = 8585.075682 C = 9563.091230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.099 5.099 4 N -0.262 5.262 5 C -0.014 4.014 6 C -0.015 4.015 7 C -0.029 4.029 8 C -0.098 4.098 9 H 0.100 0.900 10 C 0.533 3.467 11 O -0.549 6.549 12 N -0.602 5.602 13 C 0.071 3.929 14 C 0.179 3.821 15 H 0.069 0.931 16 N -0.712 5.712 17 C -0.249 4.249 18 H 0.071 0.929 19 C -0.006 4.006 20 N -0.928 5.928 21 Si 0.906 3.094 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.089 4.089 26 C -0.128 4.128 27 C -0.126 4.126 28 C 0.121 3.879 29 C -0.099 4.099 30 C -0.034 4.034 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.387 0.613 39 H 0.257 0.743 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.045 0.955 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.088 0.912 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.202 10.075 12.323 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.076 5.076 3 N -0.077 5.077 4 N -0.126 5.126 5 C -0.154 4.154 6 C -0.149 4.149 7 C -0.068 4.068 8 C -0.120 4.120 9 H 0.119 0.881 10 C 0.320 3.680 11 O -0.427 6.427 12 N -0.334 5.334 13 C -0.055 4.055 14 C 0.067 3.933 15 H 0.087 0.913 16 N -0.353 5.353 17 C -0.380 4.380 18 H 0.089 0.911 19 C -0.203 4.203 20 N -0.575 5.575 21 Si 0.737 3.263 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.091 4.091 26 C -0.186 4.186 27 C -0.184 4.184 28 C -0.002 4.002 29 C -0.137 4.137 30 C -0.073 4.073 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.223 0.777 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.107 0.893 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.971 11.484 12.718 19.342 hybrid contribution 0.134 -0.911 -1.060 1.404 sum -8.837 10.573 11.658 18.050 Atomic orbital electron populations 1.22286 0.72776 1.06070 1.05049 1.46810 1.09145 1.04585 1.47088 1.78573 0.96170 1.11245 1.21664 1.74798 1.09539 1.11993 1.16317 1.21722 0.95091 0.91275 1.07331 1.21673 0.91314 0.91899 1.10022 1.19969 0.97876 0.85607 1.03364 1.21281 0.96059 0.91560 1.03075 0.88135 1.19961 0.77368 0.87849 0.82790 1.90682 1.52029 1.72782 1.27205 1.48448 1.57098 1.13077 1.14817 1.23316 1.00649 0.99254 0.82327 1.21204 0.92307 0.89884 0.89893 0.91301 1.42454 1.49483 1.32207 1.11135 1.19193 1.20848 1.09187 0.88772 0.91066 1.24737 0.99474 0.97586 0.98453 1.69648 1.31830 1.19499 1.36493 0.86225 0.78048 0.77524 0.84550 1.21635 1.21726 1.20704 1.22050 0.94034 0.97289 0.95681 1.21668 0.96037 1.00455 1.00436 1.21580 1.03317 0.93243 1.00213 1.22324 0.96474 0.82374 0.99013 1.21476 0.96836 0.95254 1.00177 1.20009 0.92484 0.91467 1.03336 0.88984 0.87883 0.88218 0.89558 0.89089 0.93029 0.90394 0.77699 0.93312 0.92306 0.92801 0.93021 0.91166 0.93608 0.92079 0.91181 0.91282 0.90456 0.89794 0.89315 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 11.27 59.85 0.67 1.10 16 2 N -0.28 -3.03 3.73 -64.01 -0.24 -3.27 16 3 N -0.10 -1.36 13.19 60.35 0.80 -0.56 16 4 N -0.26 -3.90 12.40 33.15 0.41 -3.49 16 5 C -0.01 -0.18 7.11 -83.15 -0.59 -0.77 16 6 C -0.02 -0.17 6.76 -82.50 -0.56 -0.73 16 7 C -0.03 -0.28 5.26 -27.74 -0.15 -0.42 16 8 C -0.10 -1.14 2.06 -91.50 -0.19 -1.33 16 9 H 0.10 1.19 7.26 -51.93 -0.38 0.82 16 10 C 0.53 7.86 6.91 -10.99 -0.08 7.79 16 11 O -0.55 -9.73 16.57 5.55 0.09 -9.64 16 12 N -0.60 -8.96 3.31 -170.38 -0.56 -9.52 16 13 C 0.07 1.06 5.51 -3.07 -0.02 1.04 16 14 C 0.18 3.00 2.86 -66.10 -0.19 2.81 16 15 H 0.07 1.15 8.03 -51.93 -0.42 0.73 16 16 N -0.71 -15.62 4.61 -51.65 -0.24 -15.86 16 17 C -0.25 -6.24 9.98 -15.06 -0.15 -6.39 16 18 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.93 -26.28 13.06 55.49 0.72 -25.56 16 21 Si 0.91 21.14 29.55 -169.99 -5.02 16.12 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.09 -1.25 0.83 -152.24 -0.13 -1.38 16 26 C -0.13 -1.44 8.59 37.16 0.32 -1.12 16 27 C -0.13 -1.85 8.22 37.16 0.31 -1.54 16 28 C 0.12 1.83 5.80 -2.40 -0.01 1.81 16 29 C -0.10 -1.11 4.60 -26.45 -0.12 -1.23 16 30 C -0.03 -0.36 6.30 -27.73 -0.17 -0.54 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.35 7.72 -51.93 -0.40 -0.05 16 34 H 0.09 0.70 7.32 -51.93 -0.38 0.32 16 35 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.05 0.63 7.59 -51.93 -0.39 0.24 16 37 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 38 H 0.39 9.22 6.10 -40.82 -0.25 8.98 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.55 7.91 -51.93 -0.41 0.14 16 43 H 0.07 1.22 6.37 -51.93 -0.33 0.88 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.07 1.20 7.99 -51.93 -0.41 0.79 16 47 H 0.07 1.00 8.01 -51.92 -0.42 0.59 16 48 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 49 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 50 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -32.49 403.12 -7.51 -39.99 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.39 Total: 6.85 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.15 Total: -1.15 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 0.89 Total: -58.25 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.49 -7.51 -39.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996210522.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.125 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds