Wall clock time and date at job start Wed Apr 1 2020 05:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.29118 * 126.00772 * 2 1 4 4 N 1.29016 * 110.26059 * 179.97438 * 3 2 1 5 5 C 1.32913 * 108.63335 * 359.97438 * 4 3 2 6 6 C 1.34396 * 126.01044 * 180.02562 * 2 1 3 7 7 C 1.50535 * 129.25237 * 0.08676 * 6 2 1 8 8 C 1.53430 * 108.32588 * 163.59610 * 7 6 2 9 9 H 1.09003 * 109.46069 * 289.68770 * 8 7 6 10 10 C 1.50695 * 109.44693 * 169.73176 * 8 7 6 11 11 O 1.21287 * 120.00113 * 265.57308 * 10 8 7 12 12 N 1.34773 * 120.00260 * 85.56960 * 10 8 7 13 13 C 1.47018 * 125.64826 * 5.27070 * 12 10 8 14 14 C 1.54320 * 107.27399 * 181.01954 * 13 12 10 15 15 H 1.09003 * 110.72098 * 140.73472 * 14 13 12 16 16 N 1.46497 * 110.72785 * 263.83203 * 14 13 12 17 17 C 1.36936 * 120.00004 * 273.54737 * 16 14 13 18 18 H 1.07997 * 120.00450 * 359.97438 * 17 16 14 19 19 C 1.38818 * 120.00005 * 179.97438 * 17 16 14 20 20 N 1.31616 * 119.99914 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99808 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47212 * 90.00333 * 21 19 17 23 23 H 1.48506 * 109.46602 * 210.00061 * 21 19 17 24 24 H 1.48492 * 109.47261 * 329.99661 * 21 19 17 25 25 C 1.55155 * 102.94234 * 22.19848 * 14 13 12 26 26 C 1.53001 * 111.00913 * 82.56792 * 25 14 13 27 27 C 1.53004 * 111.00717 * 206.42317 * 25 14 13 28 28 C 1.47430 * 125.65005 * 184.96202 * 12 10 8 29 29 C 1.53107 * 109.55422 * 49.71173 * 8 7 6 30 30 C 1.50548 * 129.16604 * 180.22999 * 5 4 3 31 31 H 1.09004 * 109.47489 * 269.95984 * 1 2 3 32 32 H 1.09001 * 109.47280 * 29.95940 * 1 2 3 33 33 H 1.09002 * 109.47098 * 149.95762 * 1 2 3 34 34 H 1.09000 * 109.69567 * 43.88764 * 7 6 2 35 35 H 1.08996 * 109.72644 * 283.32292 * 7 6 2 36 36 H 1.08997 * 109.88500 * 300.44425 * 13 12 10 37 37 H 1.09005 * 109.88106 * 61.45140 * 13 12 10 38 38 H 0.97001 * 119.99934 * 93.54184 * 16 14 13 39 39 H 0.97000 * 120.00098 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.47071 * 60.00004 * 26 25 14 41 41 H 1.08999 * 109.47446 * 180.02562 * 26 25 14 42 42 H 1.08998 * 109.47091 * 300.00583 * 26 25 14 43 43 H 1.08998 * 109.46801 * 59.99621 * 27 25 14 44 44 H 1.09001 * 109.47088 * 179.97438 * 27 25 14 45 45 H 1.08994 * 109.46698 * 299.99555 * 27 25 14 46 46 H 1.08997 * 110.36698 * 274.75202 * 28 12 10 47 47 H 1.09008 * 110.36343 * 37.07304 * 28 12 10 48 48 H 1.09000 * 109.45498 * 49.97449 * 29 8 7 49 49 H 1.09004 * 109.45113 * 169.93060 * 29 8 7 50 50 H 1.09005 * 109.66453 * 43.63695 * 30 5 4 51 51 H 1.09000 * 109.69585 * 283.07077 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4658 0.6943 0.0005 5 6 3.5327 -0.6331 0.0015 6 6 2.2551 -1.0871 -0.0005 7 6 1.8722 -2.5430 -0.0029 8 6 3.1012 -3.3644 -0.4138 9 1 3.3136 -3.1967 -1.4697 10 6 2.8263 -4.8280 -0.1835 11 8 3.1696 -5.3536 0.8543 12 7 2.1990 -5.5531 -1.1306 13 6 1.8279 -5.0747 -2.4703 14 6 1.1118 -6.2370 -3.1899 15 1 0.2718 -5.8674 -3.7781 16 7 2.0491 -6.9782 -4.0374 17 6 2.2885 -6.5623 -5.3199 18 1 1.7861 -5.6881 -5.7069 19 6 3.1770 -7.2643 -6.1228 20 7 3.7890 -8.3300 -5.6515 21 14 3.5041 -6.6965 -7.8721 22 1 4.6406 -5.7408 -7.8780 23 1 3.8394 -7.8697 -8.7187 24 1 2.2923 -6.0280 -8.4103 25 6 0.6172 -7.1211 -2.0148 26 6 -0.6984 -6.5884 -1.4434 27 6 0.4723 -8.5808 -2.4499 28 6 1.7769 -6.9594 -0.9971 29 6 4.3085 -2.9342 0.4238 30 6 4.7463 -1.5239 0.0071 31 1 -0.3634 -0.0007 1.0277 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 1.0643 -2.7091 -0.7155 35 1 1.5487 -2.8399 0.9947 36 1 1.1560 -4.2206 -2.3861 37 1 2.7230 -4.7889 -3.0229 38 1 2.5002 -7.7635 -3.6900 39 1 4.4102 -8.8204 -6.2124 40 1 -1.4593 -6.5868 -2.2239 41 1 -1.0222 -7.2263 -0.6211 42 1 -0.5507 -5.5721 -1.0781 43 1 1.4380 -8.9568 -2.7877 44 1 0.1248 -9.1784 -1.6071 45 1 -0.2487 -8.6472 -3.2646 46 1 2.6005 -7.6281 -1.2475 47 1 1.4228 -7.1547 0.0151 48 1 4.0363 -2.9331 1.4792 49 1 5.1301 -3.6320 0.2615 50 1 5.4786 -1.1418 0.7184 51 1 5.1840 -1.5547 -0.9907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996210522.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:32 Heat of formation + Delta-G solvation = 48.265500 kcal Electronic energy + Delta-G solvation = -32072.777835 eV Core-core repulsion = 28008.316756 eV Total energy + Delta-G solvation = -4064.461080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.44739 -41.49905 -39.63816 -37.52544 -35.91900 -35.69399 -34.54380 -32.57359 -31.68345 -31.44377 -29.40718 -28.77054 -27.97709 -27.61577 -25.79606 -25.35655 -24.04870 -22.97647 -22.38462 -21.07798 -20.27864 -19.66232 -19.06237 -18.12982 -18.03628 -17.64089 -17.14992 -16.73799 -16.23741 -15.76779 -15.72438 -15.37548 -14.98604 -14.95044 -14.83608 -14.68994 -14.51412 -14.16471 -14.03571 -13.76265 -13.62250 -13.47924 -13.20866 -13.13248 -13.02053 -12.94345 -12.81445 -12.72900 -12.64837 -12.55830 -12.18852 -12.13638 -12.04627 -12.01335 -11.72728 -11.57555 -11.41747 -11.22959 -10.96661 -10.93867 -10.76447 -9.90241 -9.58165 -8.97421 -7.90415 -5.17883 0.52342 1.36486 1.44646 1.50470 1.51449 1.58721 1.64442 2.03251 2.58859 3.08222 3.33755 3.42010 3.50577 3.66515 3.72639 3.76951 3.85835 3.88571 3.94541 4.08483 4.11927 4.25655 4.28136 4.37818 4.38727 4.45689 4.52206 4.56333 4.62217 4.66579 4.70757 4.77590 4.86093 4.86562 4.93988 4.97455 4.99143 5.04508 5.07556 5.14859 5.15388 5.19023 5.28064 5.34171 5.39612 5.45869 5.57212 5.62123 5.64525 6.31271 6.60259 7.14605 7.39186 7.43305 8.14822 8.36144 9.32873 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010332 B = 0.003261 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.409109 B = 8585.075682 C = 9563.091230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.273 5.273 3 N -0.125 5.125 4 N -0.300 5.300 5 C -0.033 4.033 6 C -0.010 4.010 7 C -0.019 4.019 8 C -0.092 4.092 9 H 0.101 0.899 10 C 0.534 3.466 11 O -0.580 6.580 12 N -0.602 5.602 13 C 0.081 3.919 14 C 0.168 3.832 15 H 0.080 0.920 16 N -0.725 5.725 17 C -0.232 4.232 18 H 0.083 0.917 19 C -0.071 4.071 20 N -0.968 5.968 21 Si 0.962 3.038 22 H -0.293 1.293 23 H -0.303 1.303 24 H -0.266 1.266 25 C -0.076 4.076 26 C -0.122 4.122 27 C -0.122 4.122 28 C 0.120 3.880 29 C -0.093 4.093 30 C -0.028 4.028 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.374 0.626 39 H 0.248 0.752 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.038 0.962 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.095 0.905 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.123 11.481 12.919 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.066 5.066 3 N -0.103 5.103 4 N -0.163 5.163 5 C -0.174 4.174 6 C -0.145 4.145 7 C -0.058 4.058 8 C -0.114 4.114 9 H 0.119 0.881 10 C 0.323 3.677 11 O -0.460 6.460 12 N -0.333 5.333 13 C -0.044 4.044 14 C 0.058 3.942 15 H 0.098 0.902 16 N -0.364 5.364 17 C -0.364 4.364 18 H 0.101 0.899 19 C -0.263 4.263 20 N -0.619 5.619 21 Si 0.793 3.207 22 H -0.221 1.221 23 H -0.230 1.230 24 H -0.191 1.191 25 C -0.077 4.077 26 C -0.179 4.179 27 C -0.180 4.180 28 C -0.003 4.003 29 C -0.132 4.132 30 C -0.067 4.067 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.208 0.792 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.057 0.943 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.113 0.887 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.960 12.962 13.325 22.104 hybrid contribution 0.961 -1.356 -1.158 2.026 sum -10.999 11.606 12.167 20.092 Atomic orbital electron populations 1.22808 0.69782 1.07949 1.06957 1.47207 1.10745 1.03622 1.45045 1.78484 0.96283 1.12455 1.23031 1.74742 1.10513 1.13221 1.17832 1.22063 0.96469 0.91009 1.07869 1.21823 0.90895 0.92620 1.09212 1.19967 0.97267 0.83929 1.04630 1.21251 0.97304 0.89660 1.03186 0.88068 1.20433 0.76326 0.88844 0.82068 1.90673 1.53128 1.73682 1.28546 1.48496 1.57149 1.12874 1.14798 1.23087 1.00076 0.99514 0.81733 1.21507 0.91650 0.90606 0.90415 0.90243 1.42637 1.50376 1.32416 1.11003 1.19615 1.18856 1.08211 0.89722 0.89946 1.25419 1.00699 0.98375 1.01830 1.69803 1.33402 1.21277 1.37427 0.85301 0.78057 0.76451 0.80915 1.22105 1.23010 1.19093 1.22003 0.95291 0.96373 0.94039 1.21637 0.93921 1.01286 1.01072 1.21521 1.01248 0.94256 1.00938 1.22270 0.95957 0.82215 0.99809 1.21405 0.96543 0.95276 0.99962 1.19980 0.92259 0.90794 1.03686 0.87025 0.86857 0.85608 0.86952 0.88122 0.88853 0.92972 0.79203 0.94343 0.91274 0.91392 0.91682 0.94649 0.91220 0.92506 0.94318 0.90289 0.90726 0.90634 0.88674 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 11.27 127.77 1.44 1.88 16 2 N -0.27 -5.12 3.73 -356.41 -1.33 -6.45 16 3 N -0.12 -3.29 13.19 37.02 0.49 -2.80 16 4 N -0.30 -8.77 12.40 -49.03 -0.61 -9.38 16 5 C -0.03 -0.81 7.11 41.73 0.30 -0.51 16 6 C -0.01 -0.20 6.76 41.50 0.28 0.08 16 7 C -0.02 -0.29 5.26 29.94 0.16 -0.13 16 8 C -0.09 -1.96 2.06 -11.36 -0.02 -1.98 16 9 H 0.10 2.18 7.26 -2.39 -0.02 2.16 16 10 C 0.53 14.82 6.91 87.66 0.61 15.42 16 11 O -0.58 -19.96 16.57 -3.05 -0.05 -20.01 16 12 N -0.60 -16.73 3.31 -811.34 -2.69 -19.42 16 13 C 0.08 2.22 5.51 86.73 0.48 2.70 16 14 C 0.17 5.29 2.86 46.18 0.13 5.42 16 15 H 0.08 2.37 8.03 -2.39 -0.02 2.35 16 16 N -0.72 -31.75 4.61 -317.34 -1.46 -33.22 16 17 C -0.23 -11.51 9.98 84.04 0.84 -10.68 16 18 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 19 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 20 N -0.97 -56.64 13.06 21.65 0.28 -56.36 16 21 Si 0.96 43.84 29.55 68.60 2.03 45.86 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 C -0.08 -1.96 0.83 -50.71 -0.04 -2.01 16 26 C -0.12 -2.21 8.59 71.98 0.62 -1.59 16 27 C -0.12 -3.47 8.22 71.98 0.59 -2.88 16 28 C 0.12 3.51 5.80 86.93 0.50 4.01 16 29 C -0.09 -2.00 4.60 30.78 0.14 -1.86 16 30 C -0.03 -0.58 6.30 29.95 0.19 -0.40 16 31 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.13 0.23 7.72 -2.39 -0.02 0.22 16 34 H 0.11 1.21 7.32 -2.39 -0.02 1.19 16 35 H 0.10 1.48 8.11 -2.39 -0.02 1.46 16 36 H 0.09 1.82 7.59 -2.39 -0.02 1.80 16 37 H 0.05 1.73 7.90 -2.38 -0.02 1.71 16 38 H 0.37 18.38 6.10 -92.71 -0.57 17.81 16 39 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.03 7.91 -2.39 -0.02 1.01 16 43 H 0.03 1.25 6.37 -2.39 -0.02 1.24 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.04 1.37 7.99 -2.39 -0.02 1.35 16 47 H 0.08 2.15 8.01 -2.38 -0.02 2.13 16 48 H 0.07 1.64 8.11 -2.39 -0.02 1.62 16 49 H 0.07 1.74 8.11 -2.38 -0.02 1.72 16 50 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 51 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -73.08 403.12 3.70 -69.38 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.37 Total: 28.24 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 6.67 Total: 4.14 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -5.32 Total: -127.62 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.05 Total: -20.01 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -73.08 3.70 -69.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996210522.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.647 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds