Wall clock time and date at job start Wed Apr 1 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29110 * 126.00403 * 2 1 4 4 N 1.29021 * 110.25529 * 179.66166 * 3 2 1 5 5 C 1.32908 * 108.63407 * 359.97438 * 4 3 2 6 6 C 1.34398 * 126.00761 * 179.69120 * 2 1 3 7 7 C 1.50530 * 129.25437 * 0.50401 * 6 2 1 8 8 C 1.53430 * 108.32325 * 163.49233 * 7 6 2 9 9 H 1.08995 * 109.46154 * 289.69060 * 8 7 6 10 10 C 1.50706 * 109.46101 * 169.74118 * 8 7 6 11 11 O 1.21284 * 119.99971 * 265.57772 * 10 8 7 12 12 N 1.34773 * 119.99873 * 85.57262 * 10 8 7 13 13 C 1.47019 * 125.64938 * 5.27025 * 12 10 8 14 14 C 1.54329 * 107.26972 * 181.02444 * 13 12 10 15 15 H 1.08996 * 110.72111 * 263.82518 * 14 13 12 16 16 N 1.46506 * 110.72011 * 140.73588 * 14 13 12 17 17 C 1.36933 * 120.00110 * 86.44918 * 16 14 13 18 18 H 1.08002 * 120.00050 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00004 * 180.02562 * 17 16 14 20 20 N 1.31613 * 120.00062 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99838 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47225 * 90.00085 * 21 19 17 23 23 H 1.48500 * 109.46872 * 209.99620 * 21 19 17 24 24 H 1.48497 * 109.47417 * 329.99800 * 21 19 17 25 25 C 1.55151 * 102.94464 * 22.19700 * 14 13 12 26 26 C 1.52997 * 111.01077 * 82.56804 * 25 14 13 27 27 C 1.53002 * 111.00674 * 206.38617 * 25 14 13 28 28 C 1.47426 * 125.64605 * 184.96776 * 12 10 8 29 29 C 1.53111 * 109.55198 * 49.72041 * 8 7 6 30 30 C 1.50599 * 129.15645 * 180.17503 * 5 4 3 31 31 H 1.09001 * 109.47114 * 90.02331 * 1 2 3 32 32 H 1.09003 * 109.47184 * 210.02170 * 1 2 3 33 33 H 1.08995 * 109.47329 * 330.02130 * 1 2 3 34 34 H 1.09009 * 109.69542 * 43.78569 * 7 6 2 35 35 H 1.09001 * 109.73085 * 283.22009 * 7 6 2 36 36 H 1.09004 * 109.88754 * 300.43722 * 13 12 10 37 37 H 1.09002 * 109.88373 * 61.60845 * 13 12 10 38 38 H 0.97003 * 119.99741 * 266.45353 * 16 14 13 39 39 H 0.97004 * 120.00268 * 180.02562 * 20 19 17 40 40 H 1.09008 * 109.46822 * 60.00275 * 26 25 14 41 41 H 1.08995 * 109.47657 * 179.97438 * 26 25 14 42 42 H 1.08998 * 109.47199 * 300.00904 * 26 25 14 43 43 H 1.09006 * 109.47070 * 59.99403 * 27 25 14 44 44 H 1.08995 * 109.47576 * 179.97438 * 27 25 14 45 45 H 1.09003 * 109.46748 * 300.00109 * 27 25 14 46 46 H 1.08999 * 110.36773 * 274.74419 * 28 12 10 47 47 H 1.09000 * 110.36890 * 37.06757 * 28 12 10 48 48 H 1.08997 * 109.45984 * 169.89180 * 29 8 7 49 49 H 1.08999 * 109.43781 * 49.93943 * 29 8 7 50 50 H 1.09000 * 109.69273 * 283.16977 * 30 5 4 51 51 H 1.09002 * 109.69336 * 43.71099 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4657 0.6943 0.0071 5 6 3.5326 -0.6331 0.0126 6 6 2.2551 -1.0872 0.0059 7 6 1.8722 -2.5430 0.0035 8 6 3.1030 -3.3648 -0.4015 9 1 3.3197 -3.1982 -1.4566 10 6 2.8274 -4.8284 -0.1710 11 8 3.1663 -5.3529 0.8687 12 7 2.2043 -5.5544 -1.1202 13 6 1.8389 -5.0772 -2.4619 14 6 1.1260 -6.2403 -3.1835 15 1 1.8261 -6.7920 -3.8107 16 7 0.0002 -5.7444 -3.9792 17 6 0.2073 -5.3069 -5.2602 18 1 1.2004 -5.3278 -5.6841 19 6 -0.8593 -4.8366 -6.0140 20 7 -2.0695 -4.8106 -5.4973 21 14 -0.5769 -4.2405 -7.7616 22 1 -0.7344 -5.3773 -8.7039 23 1 -1.5675 -3.1842 -8.0904 24 1 0.7957 -3.6861 -7.8799 25 6 0.6265 -7.1235 -2.0098 26 6 -0.6915 -6.5905 -1.4444 27 6 0.4829 -8.5834 -2.4444 28 6 1.7819 -6.9606 -0.9873 29 6 4.3067 -2.9337 0.4408 30 6 4.7467 -1.5240 0.0253 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3634 -0.8898 0.5142 33 1 -0.3634 0.8901 0.5135 34 1 1.0673 -2.7099 -0.7124 35 1 1.5446 -2.8389 1.0000 36 1 1.1663 -4.2232 -2.3813 37 1 2.7364 -4.7942 -3.0120 38 1 -0.8918 -5.7259 -3.5986 39 1 -2.8149 -4.4823 -6.0241 40 1 -1.4491 -6.5899 -2.2281 41 1 -1.0191 -7.2283 -0.6235 42 1 -0.5456 -5.5739 -1.0794 43 1 1.4498 -8.9599 -2.7783 44 1 0.1319 -9.1803 -1.6027 45 1 -0.2349 -8.6501 -3.2620 46 1 2.6066 -7.6293 -1.2336 47 1 1.4235 -7.1551 0.0236 48 1 5.1288 -3.6319 0.2834 49 1 4.0295 -2.9311 1.4950 50 1 5.1889 -1.5565 -0.9704 51 1 5.4763 -1.1406 0.7387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996210527.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:43 Heat of formation + Delta-G solvation = 68.935699 kcal Electronic energy + Delta-G solvation = -32169.029256 eV Core-core repulsion = 28105.464503 eV Total energy + Delta-G solvation = -4063.564753 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.49301 -40.34770 -38.46054 -36.52629 -35.02072 -34.22653 -33.24080 -30.93961 -30.80478 -30.47687 -28.01923 -27.63914 -27.09832 -26.55167 -24.58440 -24.01701 -23.08337 -21.60256 -21.41172 -20.09405 -19.01360 -18.53848 -17.35163 -17.16774 -17.09287 -16.64827 -16.01342 -15.48012 -14.95367 -14.56568 -14.26796 -14.16689 -14.08654 -13.90597 -13.86665 -13.56539 -13.35538 -13.20610 -13.01524 -12.77993 -12.59789 -12.37182 -12.25444 -12.17343 -11.94438 -11.67615 -11.54603 -11.34204 -11.28966 -11.12962 -11.11452 -10.97861 -10.64983 -10.63488 -10.58318 -10.30885 -10.05198 -9.97530 -9.77868 -9.66472 -9.08575 -8.94518 -8.41358 -7.18651 -5.95022 -3.25342 1.46080 2.18460 2.45789 2.68561 3.09574 3.32639 3.39281 3.40000 3.99547 4.26097 4.43269 4.47830 4.51775 4.63854 4.68447 4.79004 4.82536 4.97917 5.01103 5.08099 5.09802 5.14155 5.26629 5.29272 5.41664 5.43555 5.50466 5.61119 5.61828 5.69041 5.70804 5.76269 5.87859 5.89128 5.89509 5.94786 6.02871 6.06924 6.14918 6.17742 6.23515 6.27706 6.33227 6.45187 6.51108 6.53925 6.65283 6.78954 7.54946 7.70048 8.22614 8.25575 8.42466 9.35977 9.89290 10.24293 11.26918 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008610 B = 0.003867 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.100583 B = 7239.048034 C = 9231.049351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.281 5.281 3 N -0.098 5.098 4 N -0.264 5.264 5 C -0.019 4.019 6 C -0.012 4.012 7 C -0.032 4.032 8 C -0.097 4.097 9 H 0.100 0.900 10 C 0.533 3.467 11 O -0.549 6.549 12 N -0.609 5.609 13 C 0.072 3.928 14 C 0.180 3.820 15 H 0.066 0.934 16 N -0.711 5.711 17 C -0.249 4.249 18 H 0.072 0.928 19 C -0.006 4.006 20 N -0.930 5.930 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.086 4.086 26 C -0.131 4.131 27 C -0.130 4.130 28 C 0.118 3.882 29 C -0.099 4.099 30 C -0.032 4.032 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.389 0.611 39 H 0.257 0.743 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.084 0.916 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.950 0.952 12.063 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.073 5.073 3 N -0.076 5.076 4 N -0.128 5.128 5 C -0.159 4.159 6 C -0.146 4.146 7 C -0.071 4.071 8 C -0.119 4.119 9 H 0.118 0.882 10 C 0.321 3.679 11 O -0.427 6.427 12 N -0.341 5.341 13 C -0.054 4.054 14 C 0.068 3.932 15 H 0.084 0.916 16 N -0.353 5.353 17 C -0.380 4.380 18 H 0.090 0.910 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.736 3.264 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.087 4.087 26 C -0.189 4.189 27 C -0.187 4.187 28 C -0.005 4.005 29 C -0.137 4.137 30 C -0.071 4.071 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.227 0.773 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.096 0.904 50 H 0.103 0.897 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.168 2.382 12.456 14.102 hybrid contribution -0.561 -0.537 -1.091 1.340 sum 5.607 1.844 11.365 12.806 Atomic orbital electron populations 1.22336 0.72506 1.05883 1.05641 1.46824 1.09276 1.04516 1.46666 1.78568 0.96107 1.11285 1.21641 1.74779 1.09666 1.11925 1.16451 1.21679 0.94987 0.91346 1.07873 1.21651 0.91270 0.91924 1.09794 1.19981 0.97962 0.85642 1.03545 1.21273 0.96206 0.91436 1.02986 0.88212 1.20028 0.77272 0.87875 0.82692 1.90678 1.52330 1.72811 1.26877 1.48547 1.57362 1.13156 1.15064 1.23370 0.99663 1.01189 0.81171 1.21205 0.90873 0.90763 0.90364 0.91637 1.42523 1.05291 1.75174 1.12345 1.19245 0.94152 1.35018 0.89544 0.91041 1.24724 0.95363 1.01683 0.98482 1.69642 0.98859 1.52303 1.36918 0.86228 0.77198 0.78228 0.84744 1.21553 1.21743 1.20671 1.22016 0.94683 0.96588 0.95436 1.21636 0.96430 1.00299 1.00496 1.21652 1.02106 0.93682 1.01291 1.22353 0.96216 0.82160 0.99785 1.21471 0.96678 0.95260 1.00285 1.19981 0.92526 0.91458 1.03137 0.88465 0.88215 0.87925 0.89075 0.89137 0.90919 0.92207 0.77341 0.93332 0.90904 0.93284 0.92885 0.92781 0.93074 0.91322 0.91625 0.90919 0.90008 0.90424 0.89721 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 11.27 59.85 0.67 1.28 16 2 N -0.28 -3.45 3.73 -64.01 -0.24 -3.69 16 3 N -0.10 -1.47 13.19 60.35 0.80 -0.67 16 4 N -0.26 -4.12 12.40 33.16 0.41 -3.71 16 5 C -0.02 -0.25 7.11 -83.13 -0.59 -0.84 16 6 C -0.01 -0.15 6.76 -82.50 -0.56 -0.71 16 7 C -0.03 -0.35 5.23 -27.74 -0.15 -0.49 16 8 C -0.10 -1.12 2.06 -91.49 -0.19 -1.31 16 9 H 0.10 1.15 7.26 -51.93 -0.38 0.77 16 10 C 0.53 7.44 6.91 -10.98 -0.08 7.37 16 11 O -0.55 -9.11 16.57 5.55 0.09 -9.02 16 12 N -0.61 -8.48 3.31 -170.37 -0.56 -9.05 16 13 C 0.07 1.09 5.52 -3.06 -0.02 1.07 16 14 C 0.18 3.04 2.84 -66.09 -0.19 2.85 16 15 H 0.07 1.14 8.02 -51.93 -0.42 0.72 16 16 N -0.71 -15.27 5.08 -51.65 -0.26 -15.53 16 17 C -0.25 -6.14 9.98 -15.06 -0.15 -6.29 16 18 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.93 -25.65 13.06 55.49 0.72 -24.92 16 21 Si 0.91 20.88 29.55 -169.99 -5.02 15.86 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.09 -1.21 0.87 -152.24 -0.13 -1.34 16 26 C -0.13 -1.89 7.95 37.16 0.30 -1.59 16 27 C -0.13 -1.68 8.68 37.16 0.32 -1.36 16 28 C 0.12 1.58 5.83 -2.40 -0.01 1.57 16 29 C -0.10 -1.04 4.60 -26.46 -0.12 -1.16 16 30 C -0.03 -0.33 6.30 -27.72 -0.17 -0.51 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 0.58 7.96 -51.93 -0.41 0.17 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.99 7.60 -51.92 -0.39 0.60 16 35 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 36 H 0.07 1.18 7.48 -51.93 -0.39 0.79 16 37 H 0.06 0.88 8.00 -51.93 -0.42 0.47 16 38 H 0.39 8.87 5.28 -40.82 -0.22 8.65 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 40 H 0.07 1.21 6.36 -51.92 -0.33 0.88 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.78 7.91 -51.93 -0.41 0.37 16 43 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 0.84 7.99 -51.93 -0.41 0.43 16 47 H 0.07 0.98 8.01 -51.93 -0.42 0.57 16 48 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 49 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 50 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -31.40 403.03 -7.53 -38.93 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -8.38 Total: 7.47 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.16 Total: -1.73 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.87 Total: -57.59 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.40 -7.53 -38.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996210527.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.869 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds