Wall clock time and date at job start Wed Apr 1 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29110 * 126.00403 * 2 1 4 4 N 1.29021 * 110.25529 * 179.66166 * 3 2 1 5 5 C 1.32908 * 108.63407 * 359.97438 * 4 3 2 6 6 C 1.34398 * 126.00761 * 179.69120 * 2 1 3 7 7 C 1.50530 * 129.25437 * 0.50401 * 6 2 1 8 8 C 1.53430 * 108.32325 * 163.49233 * 7 6 2 9 9 H 1.08995 * 109.46154 * 289.69060 * 8 7 6 10 10 C 1.50706 * 109.46101 * 169.74118 * 8 7 6 11 11 O 1.21284 * 119.99971 * 265.57772 * 10 8 7 12 12 N 1.34773 * 119.99873 * 85.57262 * 10 8 7 13 13 C 1.47019 * 125.64938 * 5.27025 * 12 10 8 14 14 C 1.54329 * 107.26972 * 181.02444 * 13 12 10 15 15 H 1.08996 * 110.72111 * 263.82518 * 14 13 12 16 16 N 1.46506 * 110.72011 * 140.73588 * 14 13 12 17 17 C 1.36933 * 120.00110 * 86.44918 * 16 14 13 18 18 H 1.08002 * 120.00050 * 0.02562 * 17 16 14 19 19 C 1.38815 * 120.00004 * 180.02562 * 17 16 14 20 20 N 1.31613 * 120.00062 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99838 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47225 * 90.00085 * 21 19 17 23 23 H 1.48500 * 109.46872 * 209.99620 * 21 19 17 24 24 H 1.48497 * 109.47417 * 329.99800 * 21 19 17 25 25 C 1.55151 * 102.94464 * 22.19700 * 14 13 12 26 26 C 1.52997 * 111.01077 * 82.56804 * 25 14 13 27 27 C 1.53002 * 111.00674 * 206.38617 * 25 14 13 28 28 C 1.47426 * 125.64605 * 184.96776 * 12 10 8 29 29 C 1.53111 * 109.55198 * 49.72041 * 8 7 6 30 30 C 1.50599 * 129.15645 * 180.17503 * 5 4 3 31 31 H 1.09001 * 109.47114 * 90.02331 * 1 2 3 32 32 H 1.09003 * 109.47184 * 210.02170 * 1 2 3 33 33 H 1.08995 * 109.47329 * 330.02130 * 1 2 3 34 34 H 1.09009 * 109.69542 * 43.78569 * 7 6 2 35 35 H 1.09001 * 109.73085 * 283.22009 * 7 6 2 36 36 H 1.09004 * 109.88754 * 300.43722 * 13 12 10 37 37 H 1.09002 * 109.88373 * 61.60845 * 13 12 10 38 38 H 0.97003 * 119.99741 * 266.45353 * 16 14 13 39 39 H 0.97004 * 120.00268 * 180.02562 * 20 19 17 40 40 H 1.09008 * 109.46822 * 60.00275 * 26 25 14 41 41 H 1.08995 * 109.47657 * 179.97438 * 26 25 14 42 42 H 1.08998 * 109.47199 * 300.00904 * 26 25 14 43 43 H 1.09006 * 109.47070 * 59.99403 * 27 25 14 44 44 H 1.08995 * 109.47576 * 179.97438 * 27 25 14 45 45 H 1.09003 * 109.46748 * 300.00109 * 27 25 14 46 46 H 1.08999 * 110.36773 * 274.74419 * 28 12 10 47 47 H 1.09000 * 110.36890 * 37.06757 * 28 12 10 48 48 H 1.08997 * 109.45984 * 169.89180 * 29 8 7 49 49 H 1.08999 * 109.43781 * 49.93943 * 29 8 7 50 50 H 1.09000 * 109.69273 * 283.16977 * 30 5 4 51 51 H 1.09002 * 109.69336 * 43.71099 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4657 0.6943 0.0071 5 6 3.5326 -0.6331 0.0126 6 6 2.2551 -1.0872 0.0059 7 6 1.8722 -2.5430 0.0035 8 6 3.1030 -3.3648 -0.4015 9 1 3.3197 -3.1982 -1.4566 10 6 2.8274 -4.8284 -0.1710 11 8 3.1663 -5.3529 0.8687 12 7 2.2043 -5.5544 -1.1202 13 6 1.8389 -5.0772 -2.4619 14 6 1.1260 -6.2403 -3.1835 15 1 1.8261 -6.7920 -3.8107 16 7 0.0002 -5.7444 -3.9792 17 6 0.2073 -5.3069 -5.2602 18 1 1.2004 -5.3278 -5.6841 19 6 -0.8593 -4.8366 -6.0140 20 7 -2.0695 -4.8106 -5.4973 21 14 -0.5769 -4.2405 -7.7616 22 1 -0.7344 -5.3773 -8.7039 23 1 -1.5675 -3.1842 -8.0904 24 1 0.7957 -3.6861 -7.8799 25 6 0.6265 -7.1235 -2.0098 26 6 -0.6915 -6.5905 -1.4444 27 6 0.4829 -8.5834 -2.4444 28 6 1.7819 -6.9606 -0.9873 29 6 4.3067 -2.9337 0.4408 30 6 4.7467 -1.5240 0.0253 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3634 -0.8898 0.5142 33 1 -0.3634 0.8901 0.5135 34 1 1.0673 -2.7099 -0.7124 35 1 1.5446 -2.8389 1.0000 36 1 1.1663 -4.2232 -2.3813 37 1 2.7364 -4.7942 -3.0120 38 1 -0.8918 -5.7259 -3.5986 39 1 -2.8149 -4.4823 -6.0241 40 1 -1.4491 -6.5899 -2.2281 41 1 -1.0191 -7.2283 -0.6235 42 1 -0.5456 -5.5739 -1.0794 43 1 1.4498 -8.9599 -2.7783 44 1 0.1319 -9.1803 -1.6027 45 1 -0.2349 -8.6501 -3.2620 46 1 2.6066 -7.6293 -1.2336 47 1 1.4235 -7.1551 0.0236 48 1 5.1288 -3.6319 0.2834 49 1 4.0295 -2.9311 1.4950 50 1 5.1889 -1.5565 -0.9704 51 1 5.4763 -1.1406 0.7387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996210527.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:42 Heat of formation + Delta-G solvation = 49.723341 kcal Electronic energy + Delta-G solvation = -32169.862366 eV Core-core repulsion = 28105.464503 eV Total energy + Delta-G solvation = -4064.397863 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.47415 -41.50482 -39.63863 -37.54053 -35.94296 -35.82986 -34.53901 -32.63421 -31.69216 -31.46090 -29.12505 -28.81100 -28.25274 -27.61799 -25.82721 -25.47085 -24.08592 -22.85603 -22.41011 -21.09197 -20.22463 -19.67194 -19.10597 -18.17889 -18.05144 -17.66734 -17.21327 -16.59549 -16.46630 -15.79970 -15.66011 -15.37113 -14.99312 -14.92918 -14.88262 -14.62355 -14.53904 -14.22508 -14.14615 -13.81119 -13.72166 -13.53646 -13.36420 -13.15078 -12.99392 -12.95208 -12.82942 -12.77555 -12.57994 -12.49909 -12.22036 -12.10834 -12.06276 -11.97890 -11.78946 -11.59706 -11.46465 -11.26828 -10.99015 -10.93946 -10.77272 -9.92573 -9.59166 -8.99952 -7.92074 -5.19370 0.48924 1.32029 1.43529 1.49753 1.51872 1.57918 1.62468 1.98335 2.58261 3.06380 3.31101 3.40378 3.50163 3.67069 3.73520 3.74335 3.82473 3.85159 3.89774 4.08593 4.17765 4.21509 4.26689 4.32979 4.38003 4.44147 4.46370 4.49840 4.54063 4.59611 4.70408 4.75228 4.82918 4.85323 4.90275 4.94340 4.99761 5.05740 5.07241 5.12203 5.18246 5.19961 5.26404 5.30369 5.36548 5.47441 5.55097 5.56574 5.59238 6.30268 6.54524 7.12443 7.39522 7.40504 8.12868 8.36952 9.30699 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008610 B = 0.003867 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.100583 B = 7239.048034 C = 9231.049351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.276 5.276 3 N -0.126 5.126 4 N -0.297 5.297 5 C -0.030 4.030 6 C -0.014 4.014 7 C -0.023 4.023 8 C -0.093 4.093 9 H 0.103 0.897 10 C 0.538 3.462 11 O -0.572 6.572 12 N -0.606 5.606 13 C 0.086 3.914 14 C 0.172 3.828 15 H 0.064 0.936 16 N -0.720 5.720 17 C -0.236 4.236 18 H 0.077 0.923 19 C -0.064 4.064 20 N -0.964 5.964 21 Si 0.958 3.042 22 H -0.291 1.291 23 H -0.301 1.301 24 H -0.272 1.272 25 C -0.077 4.077 26 C -0.125 4.125 27 C -0.126 4.126 28 C 0.121 3.879 29 C -0.090 4.090 30 C -0.027 4.027 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.382 0.618 39 H 0.249 0.751 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 0.075 12.822 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.068 5.068 3 N -0.103 5.103 4 N -0.160 5.160 5 C -0.171 4.171 6 C -0.150 4.150 7 C -0.063 4.063 8 C -0.115 4.115 9 H 0.121 0.879 10 C 0.327 3.673 11 O -0.452 6.452 12 N -0.339 5.339 13 C -0.040 4.040 14 C 0.061 3.939 15 H 0.081 0.919 16 N -0.361 5.361 17 C -0.368 4.368 18 H 0.095 0.905 19 C -0.257 4.257 20 N -0.614 5.614 21 Si 0.789 3.211 22 H -0.218 1.218 23 H -0.228 1.228 24 H -0.197 1.197 25 C -0.079 4.079 26 C -0.183 4.183 27 C -0.184 4.184 28 C -0.002 4.002 29 C -0.129 4.129 30 C -0.066 4.066 31 H 0.121 0.879 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.218 0.782 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.108 0.892 49 H 0.091 0.909 50 H 0.113 0.887 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.259 1.506 13.230 15.165 hybrid contribution -0.872 -0.339 -1.265 1.574 sum 6.387 1.166 11.964 13.613 Atomic orbital electron populations 1.22730 0.70247 1.07828 1.06576 1.47171 1.10586 1.03932 1.45153 1.78488 0.96396 1.12375 1.23082 1.74728 1.10276 1.13245 1.17772 1.22194 0.96395 0.91004 1.07489 1.21873 0.91191 0.92470 1.09430 1.19943 0.97690 0.84612 1.04041 1.21270 0.96910 0.89928 1.03414 0.87928 1.20300 0.76480 0.88485 0.82013 1.90676 1.53317 1.73457 1.27727 1.48522 1.57305 1.13446 1.14580 1.22994 0.99482 0.99802 0.81692 1.21385 0.89766 0.91742 0.90978 0.91854 1.42620 1.06292 1.75302 1.11917 1.19583 0.93986 1.32621 0.90592 0.90541 1.25331 0.95457 1.03388 1.01486 1.69770 0.99388 1.54437 1.37838 0.85367 0.77049 0.77275 0.81418 1.21832 1.22812 1.19670 1.21958 0.94824 0.96750 0.94351 1.21566 0.95863 1.00569 1.00278 1.21624 1.02228 0.93158 1.01365 1.22375 0.96114 0.82068 0.99638 1.21411 0.96408 0.95359 0.99693 1.20051 0.91784 0.90731 1.04062 0.87948 0.86078 0.86338 0.88875 0.88323 0.91884 0.91493 0.78236 0.94164 0.93473 0.91108 0.93417 0.91627 0.90894 0.93586 0.90417 0.90400 0.89243 0.90917 0.88750 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 11.27 127.77 1.44 2.37 16 2 N -0.28 -6.54 3.73 -356.42 -1.33 -7.86 16 3 N -0.13 -3.74 13.19 37.02 0.49 -3.26 16 4 N -0.30 -9.21 12.40 -48.99 -0.61 -9.82 16 5 C -0.03 -0.76 7.11 41.75 0.30 -0.47 16 6 C -0.01 -0.34 6.76 41.50 0.28 -0.06 16 7 C -0.02 -0.47 5.23 29.94 0.16 -0.31 16 8 C -0.09 -1.97 2.06 -11.36 -0.02 -1.99 16 9 H 0.10 2.14 7.26 -2.39 -0.02 2.12 16 10 C 0.54 13.75 6.91 87.66 0.61 14.36 16 11 O -0.57 -17.64 16.57 -3.04 -0.05 -17.70 16 12 N -0.61 -15.47 3.31 -811.32 -2.69 -18.16 16 13 C 0.09 2.45 5.52 86.73 0.48 2.93 16 14 C 0.17 5.56 2.84 46.18 0.13 5.69 16 15 H 0.06 2.10 8.02 -2.39 -0.02 2.08 16 16 N -0.72 -30.65 5.08 -317.32 -1.61 -32.26 16 17 C -0.24 -11.53 9.98 84.03 0.84 -10.69 16 18 H 0.08 3.60 7.83 -2.91 -0.02 3.58 16 19 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 20 N -0.96 -53.98 13.06 21.65 0.28 -53.70 16 21 Si 0.96 43.01 29.55 68.60 2.03 45.03 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C -0.08 -2.04 0.87 -50.71 -0.04 -2.09 16 26 C -0.13 -3.44 7.95 71.98 0.57 -2.87 16 27 C -0.13 -3.01 8.68 71.98 0.62 -2.39 16 28 C 0.12 2.91 5.83 86.94 0.51 3.42 16 29 C -0.09 -1.72 4.60 30.77 0.14 -1.58 16 30 C -0.03 -0.53 6.30 29.95 0.19 -0.34 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.12 1.17 7.96 -2.39 -0.02 1.15 16 33 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.86 7.60 -2.38 -0.02 1.84 16 35 H 0.10 1.85 8.12 -2.39 -0.02 1.83 16 36 H 0.06 1.95 7.48 -2.38 -0.02 1.93 16 37 H 0.07 1.83 8.00 -2.39 -0.02 1.81 16 38 H 0.38 17.53 5.28 -92.71 -0.49 17.04 16 39 H 0.25 13.79 8.31 -92.71 -0.77 13.01 16 40 H 0.05 1.55 6.36 -2.38 -0.02 1.54 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.05 1.34 7.91 -2.39 -0.02 1.32 16 43 H 0.06 1.41 8.07 -2.38 -0.02 1.39 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.08 1.74 7.99 -2.39 -0.02 1.72 16 47 H 0.08 1.86 8.01 -2.39 -0.02 1.84 16 48 H 0.09 1.59 8.11 -2.39 -0.02 1.57 16 49 H 0.07 1.48 8.11 -2.39 -0.02 1.46 16 50 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -67.18 403.03 3.62 -63.56 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.44 Total: 31.05 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 6.66 Total: 3.11 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -5.46 Total: -125.06 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.05 Total: -17.70 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -67.18 3.62 -63.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996210527.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.283 kcal (2) G-P(sol) polarization free energy of solvation -67.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds