Wall clock time and date at job start Wed Apr 1 2020 05:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 110.78070 * 2 1 4 4 C 1.54320 * 110.71646 * 123.23397 * 2 1 3 5 5 N 1.47018 * 107.27208 * 140.55517 * 4 2 1 6 6 C 1.34777 * 125.65319 * 181.01939 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 N 1.46505 * 109.47064 * 180.02562 * 8 6 5 10 10 N 1.29097 * 126.00602 * 269.69229 * 9 8 6 11 11 N 1.29025 * 110.25698 * 179.83125 * 10 9 8 12 12 C 1.32912 * 108.63543 * 0.36262 * 11 10 9 13 13 C 1.34397 * 126.00190 * 90.00110 * 9 8 6 14 14 C 1.50534 * 129.25974 * 0.18488 * 13 9 8 15 15 C 1.53421 * 108.33166 * 163.48785 * 14 13 9 16 16 C 1.53104 * 109.56511 * 49.68866 * 15 14 13 17 17 C 1.50593 * 129.16286 * 179.91500 * 12 11 10 18 18 C 1.47423 * 108.69955 * 1.28997 * 5 4 2 19 19 C 1.55123 * 104.72450 * 335.54881 * 18 5 4 20 20 H 1.09006 * 110.94232 * 155.28926 * 19 18 5 21 21 N 1.46505 * 111.19392 * 279.19325 * 19 18 5 22 22 C 1.36930 * 120.00016 * 267.18424 * 21 19 18 23 23 H 1.08001 * 120.00144 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00168 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99761 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00255 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47172 * 90.00262 * 26 24 22 28 28 H 1.48503 * 109.47229 * 210.00048 * 26 24 22 29 29 H 1.48500 * 109.47061 * 330.00061 * 26 24 22 30 30 H 1.09000 * 109.47281 * 298.22273 * 1 2 3 31 31 H 1.08999 * 109.46817 * 58.21693 * 1 2 3 32 32 H 1.09000 * 109.46973 * 178.21822 * 1 2 3 33 33 H 1.08994 * 109.47043 * 181.78238 * 3 2 1 34 34 H 1.09007 * 109.46702 * 301.78236 * 3 2 1 35 35 H 1.08997 * 109.47272 * 61.78159 * 3 2 1 36 36 H 1.09008 * 109.88271 * 21.14102 * 4 2 1 37 37 H 1.09004 * 110.01499 * 260.04974 * 4 2 1 38 38 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 39 39 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 40 40 H 1.08994 * 109.69222 * 283.16627 * 14 13 9 41 41 H 1.08999 * 109.69086 * 43.74999 * 14 13 9 42 42 H 1.09003 * 109.44554 * 289.66829 * 15 14 13 43 43 H 1.09001 * 109.44905 * 169.71582 * 15 14 13 44 44 H 1.09004 * 109.45661 * 169.91539 * 16 15 14 45 45 H 1.08997 * 109.45430 * 49.98094 * 16 15 14 46 46 H 1.09011 * 109.68667 * 283.15645 * 17 12 11 47 47 H 1.08998 * 109.69465 * 43.73276 * 17 12 11 48 48 H 1.09003 * 110.37092 * 94.48013 * 18 5 4 49 49 H 1.08999 * 110.36866 * 216.79994 * 18 5 4 50 50 H 0.96997 * 119.99462 * 87.18790 * 21 19 18 51 51 H 0.96999 * 119.99726 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2444 -1.5507 0.7392 6 6 3.9922 -2.3835 1.4900 7 8 3.7191 -2.5562 2.6590 8 6 5.1678 -3.1001 0.8770 9 7 5.8112 -3.9391 1.8912 10 7 6.7709 -3.5794 2.6762 11 7 7.1039 -4.5558 3.4511 12 6 6.3408 -5.6054 3.1636 13 6 5.5100 -5.2202 2.1637 14 6 4.4764 -6.1116 1.5287 15 6 4.8036 -7.5655 1.8933 16 6 5.0276 -7.6774 3.4037 17 6 6.3400 -6.9785 3.7820 18 6 3.4666 -1.2456 -0.6859 19 6 2.0790 -0.7955 -1.2137 20 1 2.1845 -0.1521 -2.0872 21 7 1.2272 -1.9489 -1.5143 22 6 1.2022 -2.4702 -2.7803 23 1 1.8108 -2.0313 -3.5571 24 6 0.3955 -3.5633 -3.0651 25 7 -0.3459 -4.0985 -2.1183 26 14 0.3620 -4.2748 -4.7919 27 1 1.4037 -5.3260 -4.9145 28 1 -0.9733 -4.8679 -5.0571 29 1 0.6290 -3.1961 -5.7770 30 1 -0.3634 0.4860 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1621 1.4057 -0.0320 34 1 1.6957 1.9622 -0.8736 35 1 1.7475 1.9426 0.9055 36 1 1.3128 -1.4757 1.5777 37 1 2.3735 -0.1042 1.9997 38 1 5.8839 -2.3688 0.5023 39 1 4.8228 -3.7258 0.0538 40 1 3.4869 -5.8528 1.9054 41 1 4.5014 -5.9895 0.4459 42 1 5.7067 -7.8769 1.3683 43 1 3.9736 -8.2087 1.6008 44 1 5.0819 -8.7289 3.6858 45 1 4.1992 -7.2031 3.9297 46 1 7.1849 -7.5530 3.4019 47 1 6.4114 -6.8931 4.8663 48 1 4.1947 -0.4415 -0.7927 49 1 3.8032 -2.1362 -1.2165 50 1 0.6808 -2.3432 -0.8166 51 1 -0.9099 -4.8621 -2.3174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996312669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:15 Heat of formation + Delta-G solvation = 68.748585 kcal Electronic energy + Delta-G solvation = -32055.372220 eV Core-core repulsion = 27991.799354 eV Total energy + Delta-G solvation = -4063.572867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.32741 -40.17983 -38.18375 -37.09145 -34.71164 -34.08519 -33.41204 -30.89029 -30.68374 -30.10481 -28.82765 -28.20751 -26.77925 -25.85908 -24.16883 -23.98427 -22.67623 -22.00790 -21.40898 -19.65881 -19.33344 -18.89922 -17.59327 -17.27684 -16.87661 -16.13107 -15.89674 -15.46032 -14.94576 -14.55518 -14.28574 -14.15706 -14.02041 -13.95222 -13.90403 -13.76856 -13.49869 -13.13967 -13.00199 -12.55585 -12.40190 -12.36913 -12.16748 -12.01678 -11.73287 -11.54656 -11.49104 -11.26463 -11.12739 -11.08762 -11.07625 -11.02574 -10.67547 -10.59749 -10.41643 -10.37019 -10.34352 -10.02765 -9.79085 -9.59961 -9.17093 -8.72942 -8.47471 -7.19057 -5.96763 -3.27713 1.59413 2.20991 2.56246 2.64650 3.15365 3.29230 3.35825 3.37791 4.14892 4.32854 4.40520 4.43837 4.62446 4.71827 4.77798 4.81897 4.85106 4.92266 4.93918 5.08445 5.27639 5.29553 5.39523 5.45580 5.45937 5.48863 5.53644 5.60772 5.73586 5.75499 5.81028 5.83670 5.88876 5.92410 6.01569 6.01784 6.05622 6.09253 6.11705 6.17805 6.19727 6.27000 6.32038 6.37771 6.46278 6.58077 6.63897 6.82050 7.50957 7.59438 8.12382 8.20328 8.61574 9.32682 9.86406 10.21182 11.24726 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009452 B = 0.003710 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.605991 B = 7545.689076 C = 9601.162010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.089 4.089 3 C -0.132 4.132 4 C 0.124 3.876 5 N -0.594 5.594 6 C 0.517 3.483 7 O -0.534 6.534 8 C 0.100 3.900 9 N -0.266 5.266 10 N -0.091 5.091 11 N -0.263 5.263 12 C -0.027 4.027 13 C 0.001 3.999 14 C -0.051 4.051 15 C -0.112 4.112 16 C -0.121 4.121 17 C -0.029 4.029 18 C 0.059 3.941 19 C 0.180 3.820 20 H 0.077 0.923 21 N -0.708 5.708 22 C -0.251 4.251 23 H 0.073 0.927 24 C -0.005 4.005 25 N -0.926 5.926 26 Si 0.906 3.094 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.387 0.613 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.573 0.351 5.058 9.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.190 4.190 4 C 0.002 3.998 5 N -0.327 5.327 6 C 0.303 3.697 7 O -0.411 6.411 8 C -0.026 4.026 9 N -0.057 5.057 10 N -0.068 5.068 11 N -0.128 5.128 12 C -0.167 4.167 13 C -0.133 4.133 14 C -0.090 4.090 15 C -0.150 4.150 16 C -0.159 4.159 17 C -0.068 4.068 18 C -0.067 4.067 19 C 0.067 3.933 20 H 0.095 0.905 21 N -0.348 5.348 22 C -0.382 4.382 23 H 0.091 0.909 24 C -0.202 4.202 25 N -0.573 5.573 26 Si 0.736 3.264 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.223 0.777 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.401 1.344 5.940 11.201 hybrid contribution -0.961 -1.142 -1.244 1.942 sum 8.440 0.202 4.696 9.661 Atomic orbital electron populations 1.21641 0.92661 1.03388 1.00733 1.21941 0.96913 0.94862 0.95387 1.21769 1.00621 0.94803 1.01798 1.22033 0.87214 0.94173 0.96416 1.48210 1.29269 1.43194 1.12050 1.19829 0.83582 0.79951 0.86377 1.90771 1.70588 1.63719 1.16013 1.21840 0.95491 0.96196 0.89032 1.46270 1.24358 1.08924 1.26109 1.78533 1.04596 1.21038 1.02642 1.74739 1.22508 0.97534 1.18016 1.21571 0.98010 0.97915 0.99159 1.21819 1.03127 0.86288 1.02018 1.20254 0.95805 0.92775 1.00193 1.21558 1.02473 0.94619 0.96386 1.21651 0.97384 1.00706 0.96144 1.19914 0.98406 0.88161 1.00337 1.23645 1.02137 1.00868 0.80016 1.21373 0.88034 0.89752 0.94152 0.90499 1.42383 1.49459 1.32577 1.10337 1.19220 1.21650 1.09985 0.87363 0.90947 1.24746 0.99170 0.98662 0.97589 1.69659 1.30400 1.25503 1.31774 0.86228 0.77045 0.79036 0.84047 1.21665 1.21708 1.20639 0.93682 0.92159 0.90928 0.92731 0.92114 0.92732 0.91300 0.91975 0.84903 0.84735 0.89242 0.89892 0.91292 0.90343 0.90682 0.91271 0.90227 0.90026 0.91932 0.90154 0.77732 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.16 37.16 0.30 -1.57 16 2 C -0.09 -1.25 0.80 -152.67 -0.12 -1.37 16 3 C -0.13 -1.49 8.44 37.16 0.31 -1.18 16 4 C 0.12 1.90 6.03 -3.07 -0.02 1.88 16 5 N -0.59 -9.15 3.32 -170.38 -0.57 -9.71 16 6 C 0.52 8.57 7.92 -10.98 -0.09 8.49 16 7 O -0.53 -10.97 16.76 5.56 0.09 -10.87 16 8 C 0.10 1.34 5.73 -5.19 -0.03 1.31 16 9 N -0.27 -4.22 2.82 -58.42 -0.16 -4.39 16 10 N -0.09 -1.62 13.19 60.35 0.80 -0.83 16 11 N -0.26 -4.67 12.40 33.16 0.41 -4.26 16 12 C -0.03 -0.41 7.11 -83.12 -0.59 -1.00 16 13 C 0.00 0.02 6.76 -82.49 -0.56 -0.54 16 14 C -0.05 -0.63 5.97 -27.75 -0.17 -0.80 16 15 C -0.11 -1.09 5.90 -26.46 -0.16 -1.25 16 16 C -0.12 -1.14 5.90 -26.46 -0.16 -1.29 16 17 C -0.03 -0.32 6.30 -27.72 -0.17 -0.49 16 18 C 0.06 0.83 6.08 -2.41 -0.01 0.82 16 19 C 0.18 2.90 2.96 -65.67 -0.19 2.71 16 20 H 0.08 1.22 7.99 -51.93 -0.41 0.81 16 21 N -0.71 -14.98 4.57 -51.24 -0.23 -15.21 16 22 C -0.25 -6.04 9.96 -15.06 -0.15 -6.19 16 23 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 24 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 25 N -0.93 -25.49 13.06 55.49 0.72 -24.76 16 26 Si 0.91 20.40 29.55 -169.99 -5.02 15.38 16 27 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.29 6.34 -51.93 -0.33 0.96 16 33 H 0.05 0.58 7.42 -51.93 -0.39 0.20 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 1.18 7.82 -51.92 -0.41 0.78 16 37 H 0.06 0.91 7.85 -51.93 -0.41 0.51 16 38 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.13 1.56 7.42 -51.93 -0.39 1.18 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 42 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 46 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.06 0.72 7.69 -51.93 -0.40 0.32 16 49 H 0.08 1.16 7.48 -51.93 -0.39 0.77 16 50 H 0.39 9.07 6.32 -40.82 -0.26 8.81 16 51 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -32.13 404.52 -8.16 -40.29 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -8.40 Total: 8.97 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.90 Total: -0.70 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.97 Total: -59.16 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.13 -8.16 -40.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996312669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.039 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds