Wall clock time and date at job start Wed Apr 1 2020 05:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 110.78070 * 2 1 4 4 C 1.54320 * 110.71646 * 123.23397 * 2 1 3 5 5 N 1.47018 * 107.27208 * 140.55517 * 4 2 1 6 6 C 1.34777 * 125.65319 * 181.01939 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 N 1.46505 * 109.47064 * 180.02562 * 8 6 5 10 10 N 1.29097 * 126.00602 * 269.69229 * 9 8 6 11 11 N 1.29025 * 110.25698 * 179.83125 * 10 9 8 12 12 C 1.32912 * 108.63543 * 0.36262 * 11 10 9 13 13 C 1.34397 * 126.00190 * 90.00110 * 9 8 6 14 14 C 1.50534 * 129.25974 * 0.18488 * 13 9 8 15 15 C 1.53421 * 108.33166 * 163.48785 * 14 13 9 16 16 C 1.53104 * 109.56511 * 49.68866 * 15 14 13 17 17 C 1.50593 * 129.16286 * 179.91500 * 12 11 10 18 18 C 1.47423 * 108.69955 * 1.28997 * 5 4 2 19 19 C 1.55123 * 104.72450 * 335.54881 * 18 5 4 20 20 H 1.09006 * 110.94232 * 155.28926 * 19 18 5 21 21 N 1.46505 * 111.19392 * 279.19325 * 19 18 5 22 22 C 1.36930 * 120.00016 * 267.18424 * 21 19 18 23 23 H 1.08001 * 120.00144 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00168 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99761 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00255 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47172 * 90.00262 * 26 24 22 28 28 H 1.48503 * 109.47229 * 210.00048 * 26 24 22 29 29 H 1.48500 * 109.47061 * 330.00061 * 26 24 22 30 30 H 1.09000 * 109.47281 * 298.22273 * 1 2 3 31 31 H 1.08999 * 109.46817 * 58.21693 * 1 2 3 32 32 H 1.09000 * 109.46973 * 178.21822 * 1 2 3 33 33 H 1.08994 * 109.47043 * 181.78238 * 3 2 1 34 34 H 1.09007 * 109.46702 * 301.78236 * 3 2 1 35 35 H 1.08997 * 109.47272 * 61.78159 * 3 2 1 36 36 H 1.09008 * 109.88271 * 21.14102 * 4 2 1 37 37 H 1.09004 * 110.01499 * 260.04974 * 4 2 1 38 38 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 39 39 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 40 40 H 1.08994 * 109.69222 * 283.16627 * 14 13 9 41 41 H 1.08999 * 109.69086 * 43.74999 * 14 13 9 42 42 H 1.09003 * 109.44554 * 289.66829 * 15 14 13 43 43 H 1.09001 * 109.44905 * 169.71582 * 15 14 13 44 44 H 1.09004 * 109.45661 * 169.91539 * 16 15 14 45 45 H 1.08997 * 109.45430 * 49.98094 * 16 15 14 46 46 H 1.09011 * 109.68667 * 283.15645 * 17 12 11 47 47 H 1.08998 * 109.69465 * 43.73276 * 17 12 11 48 48 H 1.09003 * 110.37092 * 94.48013 * 18 5 4 49 49 H 1.08999 * 110.36866 * 216.79994 * 18 5 4 50 50 H 0.96997 * 119.99462 * 87.18790 * 21 19 18 51 51 H 0.96999 * 119.99726 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2444 -1.5507 0.7392 6 6 3.9922 -2.3835 1.4900 7 8 3.7191 -2.5562 2.6590 8 6 5.1678 -3.1001 0.8770 9 7 5.8112 -3.9391 1.8912 10 7 6.7709 -3.5794 2.6762 11 7 7.1039 -4.5558 3.4511 12 6 6.3408 -5.6054 3.1636 13 6 5.5100 -5.2202 2.1637 14 6 4.4764 -6.1116 1.5287 15 6 4.8036 -7.5655 1.8933 16 6 5.0276 -7.6774 3.4037 17 6 6.3400 -6.9785 3.7820 18 6 3.4666 -1.2456 -0.6859 19 6 2.0790 -0.7955 -1.2137 20 1 2.1845 -0.1521 -2.0872 21 7 1.2272 -1.9489 -1.5143 22 6 1.2022 -2.4702 -2.7803 23 1 1.8108 -2.0313 -3.5571 24 6 0.3955 -3.5633 -3.0651 25 7 -0.3459 -4.0985 -2.1183 26 14 0.3620 -4.2748 -4.7919 27 1 1.4037 -5.3260 -4.9145 28 1 -0.9733 -4.8679 -5.0571 29 1 0.6290 -3.1961 -5.7770 30 1 -0.3634 0.4860 0.9055 31 1 -0.3633 0.5413 -0.8736 32 1 -0.3633 -1.0272 -0.0320 33 1 3.1621 1.4057 -0.0320 34 1 1.6957 1.9622 -0.8736 35 1 1.7475 1.9426 0.9055 36 1 1.3128 -1.4757 1.5777 37 1 2.3735 -0.1042 1.9997 38 1 5.8839 -2.3688 0.5023 39 1 4.8228 -3.7258 0.0538 40 1 3.4869 -5.8528 1.9054 41 1 4.5014 -5.9895 0.4459 42 1 5.7067 -7.8769 1.3683 43 1 3.9736 -8.2087 1.6008 44 1 5.0819 -8.7289 3.6858 45 1 4.1992 -7.2031 3.9297 46 1 7.1849 -7.5530 3.4019 47 1 6.4114 -6.8931 4.8663 48 1 4.1947 -0.4415 -0.7927 49 1 3.8032 -2.1362 -1.2165 50 1 0.6808 -2.3432 -0.8166 51 1 -0.9099 -4.8621 -2.3174 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996312669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:13 Heat of formation + Delta-G solvation = 48.589778 kcal Electronic energy + Delta-G solvation = -32056.246372 eV Core-core repulsion = 27991.799354 eV Total energy + Delta-G solvation = -4064.447018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -44.50593 -41.46455 -39.50875 -38.00616 -35.91821 -35.72437 -34.72910 -32.57470 -31.64817 -31.15906 -29.98097 -29.54841 -27.97509 -27.07710 -25.66847 -25.14105 -23.67835 -23.33983 -22.62653 -20.66257 -20.53348 -20.17587 -19.08432 -18.70191 -18.09008 -17.36806 -17.15495 -16.81555 -16.20347 -15.84524 -15.66176 -15.56798 -15.05457 -14.93548 -14.89273 -14.83412 -14.71517 -14.42204 -14.34346 -13.68368 -13.62438 -13.58843 -13.25725 -13.10631 -13.01661 -12.81790 -12.75972 -12.64610 -12.62498 -12.32223 -12.12273 -12.05462 -12.02132 -11.88033 -11.84536 -11.54110 -11.45683 -11.39145 -11.29603 -10.95429 -10.82596 -9.87792 -9.80945 -8.95006 -7.89657 -5.17854 0.38910 1.10213 1.28047 1.45648 1.51524 1.53732 1.60480 1.93332 2.59259 3.11097 3.15445 3.40506 3.42520 3.57717 3.65220 3.78927 3.83608 3.84502 3.85529 3.95542 4.03868 4.05331 4.31050 4.38384 4.44195 4.49606 4.51605 4.56367 4.57431 4.71910 4.74452 4.85609 4.87100 4.89251 4.95868 4.96692 5.04869 5.05411 5.11875 5.15260 5.17401 5.22903 5.30549 5.31841 5.40807 5.40927 5.49469 5.56441 5.62247 6.30656 6.33475 6.83546 7.38928 7.38978 8.12675 8.35387 9.33236 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009452 B = 0.003710 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.605991 B = 7545.689076 C = 9601.162010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.077 4.077 3 C -0.126 4.126 4 C 0.123 3.877 5 N -0.592 5.592 6 C 0.513 3.487 7 O -0.582 6.582 8 C 0.101 3.899 9 N -0.268 5.268 10 N -0.120 5.120 11 N -0.292 5.292 12 C -0.035 4.035 13 C -0.008 4.008 14 C -0.051 4.051 15 C -0.109 4.109 16 C -0.116 4.116 17 C -0.030 4.030 18 C 0.066 3.934 19 C 0.169 3.831 20 H 0.090 0.910 21 N -0.719 5.719 22 C -0.233 4.233 23 H 0.086 0.914 24 C -0.067 4.067 25 N -0.968 5.968 26 Si 0.962 3.038 27 H -0.289 1.289 28 H -0.307 1.307 29 H -0.268 1.268 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.053 0.947 46 H 0.100 0.900 47 H 0.085 0.915 48 H 0.104 0.896 49 H 0.079 0.921 50 H 0.373 0.627 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.170 0.964 3.789 10.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.078 4.078 3 C -0.183 4.183 4 C 0.000 4.000 5 N -0.323 5.323 6 C 0.300 3.700 7 O -0.463 6.463 8 C -0.023 4.023 9 N -0.059 5.059 10 N -0.097 5.097 11 N -0.156 5.156 12 C -0.175 4.175 13 C -0.142 4.142 14 C -0.090 4.090 15 C -0.147 4.147 16 C -0.154 4.154 17 C -0.069 4.069 18 C -0.058 4.058 19 C 0.058 3.942 20 H 0.107 0.893 21 N -0.358 5.358 22 C -0.364 4.364 23 H 0.103 0.897 24 C -0.260 4.260 25 N -0.618 5.618 26 Si 0.793 3.207 27 H -0.217 1.217 28 H -0.234 1.234 29 H -0.193 1.193 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.124 0.876 45 H 0.072 0.928 46 H 0.118 0.882 47 H 0.103 0.897 48 H 0.121 0.879 49 H 0.098 0.902 50 H 0.206 0.794 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.053 2.032 4.633 12.155 hybrid contribution -1.478 -1.229 -0.812 2.087 sum 9.575 0.803 3.821 10.340 Atomic orbital electron populations 1.21569 0.93526 1.01185 1.01699 1.21886 0.96159 0.96341 0.93426 1.21737 1.01307 0.92325 1.02976 1.22044 0.86699 0.93839 0.97369 1.48293 1.28828 1.42651 1.12577 1.20343 0.84130 0.79642 0.85877 1.90747 1.72069 1.65281 1.18182 1.22058 0.94862 0.96856 0.88552 1.46472 1.23962 1.09443 1.26037 1.78443 1.05947 1.21629 1.03680 1.74686 1.23787 0.98427 1.18722 1.22313 0.97211 0.98947 0.99013 1.22339 1.03394 0.86310 1.02146 1.20369 0.94075 0.94194 1.00394 1.21598 1.03627 0.92700 0.96726 1.21658 0.95878 1.02137 0.95754 1.20126 1.00048 0.86284 1.00405 1.23639 1.01326 1.02171 0.78709 1.21669 0.88417 0.88520 0.95570 0.89263 1.42534 1.50310 1.33861 1.09085 1.19638 1.19594 1.08659 0.88548 0.89664 1.25397 1.00168 1.00062 1.00355 1.69819 1.32225 1.26301 1.33485 0.85311 0.75936 0.78471 0.81024 1.21671 1.23400 1.19295 0.91822 0.92095 0.94600 0.91477 0.90997 0.91594 0.94216 0.91136 0.81873 0.82832 0.91135 0.89110 0.90015 0.88878 0.87607 0.92804 0.88217 0.89686 0.87861 0.90220 0.79434 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.56 8.16 71.98 0.59 -2.98 16 2 C -0.08 -2.01 0.80 -50.99 -0.04 -2.05 16 3 C -0.13 -2.40 8.44 71.98 0.61 -1.79 16 4 C 0.12 3.71 6.03 86.73 0.52 4.23 16 5 N -0.59 -17.53 3.32 -811.37 -2.70 -20.22 16 6 C 0.51 16.83 7.92 87.66 0.69 17.52 16 7 O -0.58 -24.52 16.76 -3.02 -0.05 -24.57 16 8 C 0.10 2.59 5.73 85.63 0.49 3.08 16 9 N -0.27 -8.44 2.82 -338.76 -0.95 -9.39 16 10 N -0.12 -4.32 13.19 37.02 0.49 -3.83 16 11 N -0.29 -10.46 12.40 -48.99 -0.61 -11.07 16 12 C -0.03 -1.04 7.11 41.75 0.30 -0.74 16 13 C -0.01 -0.23 6.76 41.50 0.28 0.05 16 14 C -0.05 -1.24 5.97 29.94 0.18 -1.07 16 15 C -0.11 -1.91 5.90 30.77 0.18 -1.73 16 16 C -0.12 -1.99 5.90 30.77 0.18 -1.80 16 17 C -0.03 -0.61 6.30 29.96 0.19 -0.42 16 18 C 0.07 1.67 6.08 86.93 0.53 2.20 16 19 C 0.17 5.10 2.96 46.46 0.14 5.23 16 20 H 0.09 2.53 7.99 -2.38 -0.02 2.51 16 21 N -0.72 -30.15 4.57 -316.02 -1.44 -31.60 16 22 C -0.23 -10.97 9.96 84.03 0.84 -10.13 16 23 H 0.09 3.74 7.83 -2.91 -0.02 3.72 16 24 C -0.07 -3.46 5.50 84.86 0.47 -2.99 16 25 N -0.97 -54.73 13.06 21.65 0.28 -54.45 16 26 Si 0.96 41.97 29.55 68.60 2.03 44.00 16 27 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.31 -14.04 7.11 99.48 0.71 -13.33 16 29 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.03 1.31 6.34 -2.39 -0.02 1.30 16 33 H 0.07 1.14 7.42 -2.39 -0.02 1.12 16 34 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.04 1.42 7.82 -2.38 -0.02 1.40 16 37 H 0.07 2.01 7.85 -2.39 -0.02 1.99 16 38 H 0.16 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.15 3.32 7.42 -2.39 -0.02 3.30 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 41 H 0.09 2.02 7.87 -2.39 -0.02 2.00 16 42 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 43 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.05 1.09 8.12 -2.39 -0.02 1.07 16 46 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 47 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.10 1.87 7.69 -2.39 -0.02 1.85 16 49 H 0.08 2.07 7.48 -2.39 -0.02 2.05 16 50 H 0.37 17.91 6.32 -92.71 -0.59 17.33 16 51 H 0.25 13.88 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -72.85 404.52 3.53 -69.32 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: 0.35 Total: 35.21 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 6.14 Total: 6.62 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -4.93 Total: -130.57 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -72.85 3.53 -69.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996312669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.907 kcal (2) G-P(sol) polarization free energy of solvation -72.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds