Wall clock time and date at job start Wed Apr 1 2020 05:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40442 * 126.82155 * 2 1 4 4 C 1.30709 * 106.79088 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.52578 * 180.02562 * 4 3 2 6 6 C 1.53009 * 117.49601 * 8.59087 * 5 4 3 7 7 C 1.52996 * 117.49709 * 299.97152 * 5 4 3 8 8 N 1.33239 * 108.94682 * 359.75597 * 4 3 2 9 9 C 1.30832 * 109.83076 * 0.41133 * 8 4 3 10 10 C 1.50700 * 125.96163 * 179.86850 * 9 8 4 11 11 C 1.50705 * 109.46695 * 269.68624 * 10 9 8 12 12 O 1.21286 * 119.99980 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99749 * 180.02562 * 11 10 9 14 14 C 1.47018 * 125.64993 * 359.97196 * 13 11 10 15 15 C 1.54325 * 107.40412 * 178.90064 * 14 13 11 16 16 H 1.09002 * 110.72265 * 219.52294 * 15 14 13 17 17 N 1.46501 * 110.72113 * 96.24493 * 15 14 13 18 18 C 1.36931 * 119.99967 * 86.45843 * 17 15 14 19 19 H 1.08005 * 120.00140 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00234 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00140 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46966 * 59.99259 * 22 20 18 24 24 H 1.48495 * 109.46855 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46632 * 299.99251 * 22 20 18 26 26 C 1.55405 * 102.82616 * 337.97548 * 15 14 13 27 27 C 1.53000 * 110.89394 * 277.26684 * 26 15 14 28 28 C 1.53000 * 111.03706 * 153.46985 * 26 15 14 29 29 C 1.47426 * 125.64489 * 180.02562 * 13 11 10 30 30 H 1.09006 * 109.46939 * 270.04194 * 1 2 3 31 31 H 1.08994 * 109.47152 * 30.04001 * 1 2 3 32 32 H 1.09001 * 109.47019 * 150.04212 * 1 2 3 33 33 H 1.08996 * 115.55117 * 154.30152 * 5 4 3 34 34 H 1.08991 * 117.49647 * 0.02562 * 6 5 4 35 35 H 1.08997 * 117.49084 * 145.02419 * 6 5 4 36 36 H 1.08999 * 117.50002 * 214.98129 * 7 5 4 37 37 H 1.09006 * 117.49980 * 359.97438 * 7 5 4 38 38 H 1.08998 * 109.46958 * 149.68625 * 10 9 8 39 39 H 1.08995 * 109.47428 * 29.68245 * 10 9 8 40 40 H 1.09002 * 109.88241 * 298.39592 * 14 13 11 41 41 H 1.09000 * 109.88049 * 59.40721 * 14 13 11 42 42 H 0.97002 * 119.99754 * 266.45742 * 17 15 14 43 43 H 0.96993 * 120.00092 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.47124 * 173.68399 * 27 26 15 45 45 H 1.09000 * 109.46711 * 293.68751 * 27 26 15 46 46 H 1.08996 * 109.47179 * 53.68650 * 27 26 15 47 47 H 1.08997 * 109.47294 * 306.22850 * 28 26 15 48 48 H 1.08997 * 109.47279 * 66.23530 * 28 26 15 49 49 H 1.09006 * 109.47100 * 186.23324 * 28 26 15 50 50 H 1.08999 * 110.36956 * 322.93474 * 29 13 11 51 51 H 1.09001 * 110.36709 * 85.14667 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3068 1.1242 0.0000 4 6 3.5348 0.6765 0.0006 5 6 4.7776 1.5289 0.0013 6 6 4.6010 3.0352 0.2042 7 6 4.9773 2.4877 -1.1741 8 7 3.5096 -0.6556 0.0063 9 6 2.2707 -1.0761 0.0006 10 6 1.8247 -2.5156 0.0014 11 6 1.6762 -2.9962 -1.4192 12 8 1.9092 -2.2437 -2.3414 13 7 1.2836 -4.2619 -1.6648 14 6 0.9696 -5.2745 -0.6463 15 6 0.5418 -6.5583 -1.3882 16 1 -0.2898 -7.0413 -0.8752 17 7 1.6730 -7.4790 -1.5257 18 6 1.9612 -8.3642 -0.5215 19 1 1.3548 -8.3834 0.3720 20 6 3.0334 -9.2362 -0.6515 21 7 3.7728 -9.2125 -1.7401 22 14 3.4261 -10.4444 0.7181 23 1 2.2611 -11.3384 0.9387 24 1 4.6086 -11.2576 0.3367 25 1 3.7205 -9.6976 1.9675 26 6 0.0981 -6.0221 -2.7777 27 6 -1.3408 -5.5045 -2.7288 28 6 0.2562 -7.0954 -3.8566 29 6 1.0991 -4.8606 -2.9993 30 1 -0.3633 0.0008 1.0277 31 1 -0.3633 0.8896 -0.5144 32 1 -0.3633 -0.8904 -0.5132 33 1 5.6663 1.0640 0.4281 34 1 3.5861 3.4094 0.3375 35 1 5.3737 3.5614 0.7647 36 1 5.9974 2.6539 -1.5203 37 1 4.2100 2.5018 -1.9482 38 1 0.8670 -2.5989 0.5152 39 1 2.5672 -3.1257 0.5156 40 1 1.8517 -5.4745 -0.0379 41 1 0.1548 -4.9233 -0.0132 42 1 2.2179 -7.4615 -2.3280 43 1 4.5217 -9.8221 -1.8311 44 1 -1.5900 -5.0334 -3.6797 45 1 -2.0203 -6.3371 -2.5467 46 1 -1.4372 -4.7744 -1.9254 47 1 1.2768 -7.4778 -3.8419 48 1 -0.4403 -7.9110 -3.6626 49 1 0.0448 -6.6618 -4.8342 50 1 0.6824 -4.1272 -3.6898 51 1 2.0472 -5.2417 -3.3786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996646237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:29 Heat of formation + Delta-G solvation = 97.319008 kcal Electronic energy + Delta-G solvation = -31131.024351 eV Core-core repulsion = 27068.690391 eV Total energy + Delta-G solvation = -4062.333960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.23809 -40.06613 -38.07231 -37.32701 -34.03334 -33.99045 -33.36432 -32.49875 -30.82768 -29.22823 -28.03421 -27.51667 -26.76519 -25.84114 -23.90711 -23.83491 -22.57014 -21.78728 -20.92917 -20.03722 -19.09050 -18.67653 -17.36664 -17.14794 -16.89468 -16.05615 -15.87990 -15.53995 -15.17879 -14.93181 -14.67429 -14.23963 -14.08438 -13.92420 -13.68556 -13.45970 -13.37019 -12.95817 -12.89924 -12.50090 -12.36837 -12.24068 -12.16334 -11.91412 -11.81667 -11.71991 -11.63543 -11.52356 -11.04521 -11.03546 -10.92850 -10.70638 -10.63881 -10.51071 -10.31073 -9.99419 -9.96921 -9.87228 -9.70424 -9.63233 -9.23204 -9.04173 -8.34997 -7.11908 -5.87807 -3.18551 1.47050 2.18007 2.65588 2.71769 3.21675 3.37439 3.42344 3.44025 3.70505 3.85126 4.24465 4.35560 4.47796 4.54494 4.67551 4.79097 4.80581 4.87044 4.94125 4.98490 5.00995 5.13209 5.17705 5.28448 5.38179 5.44473 5.45859 5.54538 5.59855 5.62258 5.68206 5.82035 5.87897 5.93205 5.94905 6.03579 6.11962 6.15104 6.21368 6.25045 6.27323 6.32922 6.38906 6.48393 6.55137 6.68952 6.70658 6.87541 7.58770 7.73635 8.10040 8.25927 8.30000 9.41680 9.95624 10.29929 11.34018 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012103 B = 0.002639 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.849723 B =10608.967192 C =11840.012349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.375 5.375 3 N -0.318 5.318 4 C 0.255 3.745 5 C -0.069 4.069 6 C -0.161 4.161 7 C -0.159 4.159 8 N -0.525 5.525 9 C 0.309 3.691 10 C -0.062 4.062 11 C 0.532 3.468 12 O -0.543 6.543 13 N -0.601 5.601 14 C 0.066 3.934 15 C 0.180 3.820 16 H 0.071 0.929 17 N -0.712 5.712 18 C -0.250 4.250 19 H 0.072 0.928 20 C -0.006 4.006 21 N -0.928 5.928 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.089 4.089 27 C -0.129 4.129 28 C -0.128 4.128 29 C 0.122 3.878 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.387 0.613 43 H 0.258 0.742 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.045 0.955 50 H 0.069 0.931 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.372 17.766 2.784 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.165 5.165 3 N -0.147 5.147 4 C -0.026 4.026 5 C -0.090 4.090 6 C -0.199 4.199 7 C -0.197 4.197 8 N -0.252 5.252 9 C 0.032 3.968 10 C -0.105 4.105 11 C 0.318 3.682 12 O -0.421 6.421 13 N -0.333 5.333 14 C -0.060 4.060 15 C 0.067 3.933 16 H 0.089 0.911 17 N -0.353 5.353 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.203 4.203 21 N -0.575 5.575 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.090 4.090 27 C -0.187 4.187 28 C -0.186 4.186 29 C 0.000 4.000 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.223 0.777 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.204 18.627 2.471 20.504 hybrid contribution 0.249 -0.992 0.607 1.190 sum -7.955 17.635 3.078 19.589 Atomic orbital electron populations 1.21930 0.73986 1.05066 1.03546 1.50052 1.07693 1.03756 1.54965 1.77873 1.01327 1.07481 1.28000 1.23030 0.92383 0.89247 0.97975 1.20043 0.93478 0.89720 1.05764 1.23022 1.03631 0.93743 0.99535 1.23025 1.03244 1.01686 0.91777 1.70247 1.19442 1.10755 1.24755 1.23333 0.86030 0.91383 0.96057 1.20160 1.04939 0.88019 0.97363 1.19606 0.77566 0.81041 0.89980 1.90740 1.50749 1.54603 1.46023 1.48332 1.65627 1.10131 1.09238 1.23388 1.00623 0.90259 0.91725 1.21236 0.91711 0.88444 0.91867 0.91071 1.42472 1.31856 1.39446 1.21492 1.19146 1.10348 1.11299 0.97258 0.91044 1.24754 0.98147 0.99876 0.97541 1.69639 1.20476 1.40462 1.26901 0.86281 0.77511 0.81016 0.81398 1.21213 1.21703 1.21168 1.22055 0.94376 0.94966 0.97638 1.21680 0.94975 1.00702 1.01295 1.21606 1.03820 0.97280 0.95858 1.22286 0.99179 0.94324 0.84206 0.90119 0.88903 0.89203 0.85122 0.87964 0.87941 0.87749 0.88561 0.86812 0.84855 0.90131 0.92620 0.77662 0.93245 0.92879 0.92259 0.92951 0.90792 0.92194 0.93599 0.91232 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 11.16 59.85 0.67 1.50 16 2 N -0.37 -5.12 4.04 -65.09 -0.26 -5.39 16 3 N -0.32 -4.81 12.24 32.42 0.40 -4.42 16 4 C 0.26 3.96 7.69 -156.86 -1.21 2.75 16 5 C -0.07 -0.83 6.33 -91.77 -0.58 -1.41 16 6 C -0.16 -1.50 10.13 -26.73 -0.27 -1.77 16 7 C -0.16 -1.59 10.23 -26.73 -0.27 -1.87 16 8 N -0.53 -9.00 11.19 -8.16 -0.09 -9.09 16 9 C 0.31 4.66 6.48 -155.70 -1.01 3.65 16 10 C -0.06 -0.79 5.02 -29.03 -0.15 -0.94 16 11 C 0.53 8.48 7.84 -10.98 -0.09 8.39 16 12 O -0.54 -10.67 16.29 5.55 0.09 -10.58 16 13 N -0.60 -9.26 3.31 -170.51 -0.56 -9.82 16 14 C 0.07 0.99 5.83 -3.07 -0.02 0.97 16 15 C 0.18 3.03 2.88 -65.96 -0.19 2.84 16 16 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 17 N -0.71 -15.70 4.60 -51.52 -0.24 -15.94 16 18 C -0.25 -6.25 9.98 -15.06 -0.15 -6.40 16 19 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 21 N -0.93 -26.49 13.06 55.49 0.72 -25.76 16 22 Si 0.91 21.17 29.55 -169.99 -5.02 16.14 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 C -0.09 -1.28 0.83 -152.22 -0.13 -1.41 16 27 C -0.13 -1.50 8.60 37.16 0.32 -1.18 16 28 C -0.13 -1.92 8.35 37.16 0.31 -1.61 16 29 C 0.12 1.92 5.82 -2.52 -0.01 1.91 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.68 7.72 -51.93 -0.40 0.28 16 33 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.10 1.03 7.87 -51.93 -0.41 0.62 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.11 1.00 7.76 -51.93 -0.40 0.59 16 39 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 40 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.39 9.32 6.02 -40.82 -0.25 9.07 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.58 7.81 -51.93 -0.41 0.17 16 47 H 0.07 1.32 6.17 -51.93 -0.32 1.00 16 48 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 1.06 7.95 -51.93 -0.41 0.65 16 51 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 LS Contribution 417.53 15.07 6.29 6.29 Total: -1.00 -33.92 417.53 -10.01 -43.93 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -8.47 Total: 9.46 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -2.87 Total: 5.18 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -0.03 Total: -70.42 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.92 -10.01 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996646237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.252 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds