Wall clock time and date at job start Wed Apr 1 2020 05:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40442 * 126.82155 * 2 1 4 4 C 1.30709 * 106.79088 * 179.97438 * 3 2 1 5 5 C 1.50705 * 125.52578 * 180.02562 * 4 3 2 6 6 C 1.53009 * 117.49601 * 8.59087 * 5 4 3 7 7 C 1.52996 * 117.49709 * 299.97152 * 5 4 3 8 8 N 1.33239 * 108.94682 * 359.75597 * 4 3 2 9 9 C 1.30832 * 109.83076 * 0.41133 * 8 4 3 10 10 C 1.50700 * 125.96163 * 179.86850 * 9 8 4 11 11 C 1.50705 * 109.46695 * 269.68624 * 10 9 8 12 12 O 1.21286 * 119.99980 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99749 * 180.02562 * 11 10 9 14 14 C 1.47018 * 125.64993 * 359.97196 * 13 11 10 15 15 C 1.54325 * 107.40412 * 178.90064 * 14 13 11 16 16 H 1.09002 * 110.72265 * 219.52294 * 15 14 13 17 17 N 1.46501 * 110.72113 * 96.24493 * 15 14 13 18 18 C 1.36931 * 119.99967 * 86.45843 * 17 15 14 19 19 H 1.08005 * 120.00140 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00234 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00140 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46966 * 59.99259 * 22 20 18 24 24 H 1.48495 * 109.46855 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46632 * 299.99251 * 22 20 18 26 26 C 1.55405 * 102.82616 * 337.97548 * 15 14 13 27 27 C 1.53000 * 110.89394 * 277.26684 * 26 15 14 28 28 C 1.53000 * 111.03706 * 153.46985 * 26 15 14 29 29 C 1.47426 * 125.64489 * 180.02562 * 13 11 10 30 30 H 1.09006 * 109.46939 * 270.04194 * 1 2 3 31 31 H 1.08994 * 109.47152 * 30.04001 * 1 2 3 32 32 H 1.09001 * 109.47019 * 150.04212 * 1 2 3 33 33 H 1.08996 * 115.55117 * 154.30152 * 5 4 3 34 34 H 1.08991 * 117.49647 * 0.02562 * 6 5 4 35 35 H 1.08997 * 117.49084 * 145.02419 * 6 5 4 36 36 H 1.08999 * 117.50002 * 214.98129 * 7 5 4 37 37 H 1.09006 * 117.49980 * 359.97438 * 7 5 4 38 38 H 1.08998 * 109.46958 * 149.68625 * 10 9 8 39 39 H 1.08995 * 109.47428 * 29.68245 * 10 9 8 40 40 H 1.09002 * 109.88241 * 298.39592 * 14 13 11 41 41 H 1.09000 * 109.88049 * 59.40721 * 14 13 11 42 42 H 0.97002 * 119.99754 * 266.45742 * 17 15 14 43 43 H 0.96993 * 120.00092 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.47124 * 173.68399 * 27 26 15 45 45 H 1.09000 * 109.46711 * 293.68751 * 27 26 15 46 46 H 1.08996 * 109.47179 * 53.68650 * 27 26 15 47 47 H 1.08997 * 109.47294 * 306.22850 * 28 26 15 48 48 H 1.08997 * 109.47279 * 66.23530 * 28 26 15 49 49 H 1.09006 * 109.47100 * 186.23324 * 28 26 15 50 50 H 1.08999 * 110.36956 * 322.93474 * 29 13 11 51 51 H 1.09001 * 110.36709 * 85.14667 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3068 1.1242 0.0000 4 6 3.5348 0.6765 0.0006 5 6 4.7776 1.5289 0.0013 6 6 4.6010 3.0352 0.2042 7 6 4.9773 2.4877 -1.1741 8 7 3.5096 -0.6556 0.0063 9 6 2.2707 -1.0761 0.0006 10 6 1.8247 -2.5156 0.0014 11 6 1.6762 -2.9962 -1.4192 12 8 1.9092 -2.2437 -2.3414 13 7 1.2836 -4.2619 -1.6648 14 6 0.9696 -5.2745 -0.6463 15 6 0.5418 -6.5583 -1.3882 16 1 -0.2898 -7.0413 -0.8752 17 7 1.6730 -7.4790 -1.5257 18 6 1.9612 -8.3642 -0.5215 19 1 1.3548 -8.3834 0.3720 20 6 3.0334 -9.2362 -0.6515 21 7 3.7728 -9.2125 -1.7401 22 14 3.4261 -10.4444 0.7181 23 1 2.2611 -11.3384 0.9387 24 1 4.6086 -11.2576 0.3367 25 1 3.7205 -9.6976 1.9675 26 6 0.0981 -6.0221 -2.7777 27 6 -1.3408 -5.5045 -2.7288 28 6 0.2562 -7.0954 -3.8566 29 6 1.0991 -4.8606 -2.9993 30 1 -0.3633 0.0008 1.0277 31 1 -0.3633 0.8896 -0.5144 32 1 -0.3633 -0.8904 -0.5132 33 1 5.6663 1.0640 0.4281 34 1 3.5861 3.4094 0.3375 35 1 5.3737 3.5614 0.7647 36 1 5.9974 2.6539 -1.5203 37 1 4.2100 2.5018 -1.9482 38 1 0.8670 -2.5989 0.5152 39 1 2.5672 -3.1257 0.5156 40 1 1.8517 -5.4745 -0.0379 41 1 0.1548 -4.9233 -0.0132 42 1 2.2179 -7.4615 -2.3280 43 1 4.5217 -9.8221 -1.8311 44 1 -1.5900 -5.0334 -3.6797 45 1 -2.0203 -6.3371 -2.5467 46 1 -1.4372 -4.7744 -1.9254 47 1 1.2768 -7.4778 -3.8419 48 1 -0.4403 -7.9110 -3.6626 49 1 0.0448 -6.6618 -4.8342 50 1 0.6824 -4.1272 -3.6898 51 1 2.0472 -5.2417 -3.3786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996646237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:28 Heat of formation + Delta-G solvation = 76.302240 kcal Electronic energy + Delta-G solvation = -31131.935706 eV Core-core repulsion = 27068.690391 eV Total energy + Delta-G solvation = -4063.245315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.29294 -41.34349 -39.37321 -38.17955 -35.71206 -34.95183 -34.67801 -33.59123 -32.56824 -30.30586 -29.42579 -28.38899 -27.97945 -27.03518 -25.63580 -24.76509 -23.34364 -23.15589 -22.03455 -21.04031 -20.36538 -19.90043 -19.07028 -18.26131 -18.00834 -17.33439 -17.01440 -16.59527 -16.38983 -16.20258 -15.79199 -15.64461 -15.52252 -15.13865 -14.68993 -14.58086 -14.37137 -14.17437 -14.14495 -13.69449 -13.40373 -13.37508 -13.20631 -13.13799 -13.03246 -12.77233 -12.73627 -12.72101 -12.62879 -12.43292 -12.16114 -12.05573 -11.89771 -11.80079 -11.50518 -11.40333 -11.30032 -11.14274 -11.08179 -10.89057 -10.75900 -10.19756 -9.65783 -8.96952 -7.88606 -5.16534 0.40555 1.27636 1.46499 1.52665 1.53966 1.58735 1.59683 2.05834 2.60688 2.75507 2.97207 3.30588 3.35897 3.43205 3.45685 3.73519 3.84028 3.85425 3.92956 4.00738 4.04455 4.08090 4.19804 4.31417 4.31905 4.35471 4.51096 4.52460 4.55887 4.62261 4.70973 4.71628 4.82678 4.87580 4.91259 4.95500 5.05722 5.08186 5.11888 5.13478 5.20987 5.25327 5.27643 5.34576 5.37494 5.43900 5.58446 5.64144 5.73952 6.32495 6.49217 7.01037 7.02331 7.40240 8.15575 8.36913 9.34592 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012103 B = 0.002639 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.849723 B =10608.967192 C =11840.012349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.373 5.373 3 N -0.334 5.334 4 C 0.239 3.761 5 C -0.096 4.096 6 C -0.139 4.139 7 C -0.155 4.155 8 N -0.568 5.568 9 C 0.296 3.704 10 C -0.054 4.054 11 C 0.532 3.468 12 O -0.585 6.585 13 N -0.598 5.598 14 C 0.074 3.926 15 C 0.168 3.832 16 H 0.085 0.915 17 N -0.725 5.725 18 C -0.231 4.231 19 H 0.086 0.914 20 C -0.075 4.075 21 N -0.971 5.971 22 Si 0.966 3.034 23 H -0.277 1.277 24 H -0.306 1.306 25 H -0.278 1.278 26 C -0.075 4.075 27 C -0.122 4.122 28 C -0.124 4.124 29 C 0.122 3.878 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.162 0.838 39 H 0.136 0.864 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.373 0.627 43 H 0.247 0.753 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.037 0.963 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.075 0.925 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.994 19.034 4.550 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.163 5.163 3 N -0.163 5.163 4 C -0.042 4.042 5 C -0.117 4.117 6 C -0.176 4.176 7 C -0.194 4.194 8 N -0.296 5.296 9 C 0.019 3.981 10 C -0.095 4.095 11 C 0.320 3.680 12 O -0.466 6.466 13 N -0.330 5.330 14 C -0.050 4.050 15 C 0.058 3.942 16 H 0.103 0.897 17 N -0.365 5.365 18 C -0.363 4.363 19 H 0.104 0.896 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.796 3.204 23 H -0.203 1.203 24 H -0.233 1.233 25 H -0.204 1.204 26 C -0.076 4.076 27 C -0.179 4.179 28 C -0.182 4.182 29 C -0.001 4.001 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.154 0.846 34 H 0.112 0.888 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.097 0.903 38 H 0.179 0.821 39 H 0.154 0.846 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.207 0.793 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.056 0.944 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.916 19.918 4.280 23.113 hybrid contribution 0.962 -1.318 0.003 1.632 sum -9.954 18.601 4.283 21.527 Atomic orbital electron populations 1.22363 0.71254 1.06083 1.05827 1.50364 1.09187 1.02972 1.53749 1.77786 1.01510 1.08508 1.28527 1.23638 0.93538 0.89229 0.97802 1.20271 0.92750 0.90855 1.07825 1.23084 1.04023 0.91685 0.98850 1.23078 1.03971 1.00866 0.91489 1.70207 1.21215 1.11912 1.26243 1.23641 0.85992 0.92438 0.96036 1.20242 1.07398 0.86602 0.95286 1.20114 0.76402 0.80592 0.90909 1.90725 1.52497 1.55716 1.47690 1.48372 1.65315 1.10139 1.09132 1.23236 1.01317 0.89186 0.91307 1.21554 0.90321 0.88420 0.93891 0.89690 1.42672 1.33156 1.40254 1.20404 1.19604 1.08998 1.10037 0.97645 0.89613 1.25479 0.99165 1.02483 0.99578 1.69810 1.21404 1.41827 1.29105 0.85322 0.76772 0.79118 0.79191 1.20295 1.23346 1.20443 1.22000 0.96023 0.93842 0.95777 1.21644 0.92325 1.01421 1.02554 1.21545 1.01514 0.97688 0.97453 1.22227 0.98167 0.94940 0.84766 0.87123 0.88340 0.87811 0.84584 0.88846 0.85086 0.85507 0.90339 0.82089 0.84619 0.92225 0.87775 0.79284 0.94411 0.91762 0.91071 0.91624 0.94438 0.92031 0.91593 0.90683 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 11.16 127.77 1.43 2.65 16 2 N -0.37 -9.69 4.04 -359.86 -1.45 -11.15 16 3 N -0.33 -10.01 12.24 -51.33 -0.63 -10.64 16 4 C 0.24 7.50 7.69 138.63 1.07 8.56 16 5 C -0.10 -2.29 6.33 -11.54 -0.07 -2.36 16 6 C -0.14 -2.40 10.13 30.60 0.31 -2.09 16 7 C -0.16 -3.04 10.23 30.59 0.31 -2.72 16 8 N -0.57 -19.67 11.19 -179.73 -2.01 -21.68 16 9 C 0.30 8.65 6.48 138.23 0.90 9.55 16 10 C -0.05 -1.25 5.02 29.10 0.15 -1.10 16 11 C 0.53 16.26 7.84 87.66 0.69 16.94 16 12 O -0.59 -22.96 16.29 -3.05 -0.05 -23.01 16 13 N -0.60 -17.46 3.31 -811.75 -2.69 -20.15 16 14 C 0.07 2.01 5.83 86.73 0.51 2.52 16 15 C 0.17 5.32 2.88 46.27 0.13 5.45 16 16 H 0.09 2.51 8.03 -2.39 -0.02 2.49 16 17 N -0.73 -31.99 4.60 -316.91 -1.46 -33.44 16 18 C -0.23 -11.44 9.98 84.03 0.84 -10.60 16 19 H 0.09 3.93 7.83 -2.91 -0.02 3.90 16 20 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 21 N -0.97 -57.43 13.06 21.65 0.28 -57.15 16 22 Si 0.97 43.93 29.55 68.60 2.03 45.95 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.31 -14.57 7.11 99.48 0.71 -13.87 16 25 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 26 C -0.07 -2.02 0.83 -50.70 -0.04 -2.07 16 27 C -0.12 -2.36 8.60 71.98 0.62 -1.74 16 28 C -0.12 -3.66 8.35 71.98 0.60 -3.06 16 29 C 0.12 3.76 5.82 86.86 0.51 4.27 16 30 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.10 1.21 7.72 -2.39 -0.02 1.20 16 33 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.09 1.80 7.87 -2.39 -0.02 1.78 16 35 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.16 2.09 7.76 -2.39 -0.02 2.07 16 39 H 0.14 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.06 1.92 8.04 -2.39 -0.02 1.90 16 41 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.37 18.60 6.02 -92.71 -0.56 18.05 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.06 1.12 7.81 -2.39 -0.02 1.11 16 47 H 0.04 1.38 6.17 -2.39 -0.01 1.37 16 48 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 50 H 0.07 2.24 7.95 -2.39 -0.02 2.22 16 51 H 0.04 1.43 8.04 -2.39 -0.02 1.41 16 Total: -1.00 -77.89 417.53 2.79 -75.10 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 0.37 Total: 35.54 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 8.40 Total: 20.62 kcal Atomic # 7 Polarization: -146.26 SS G_CDS: -7.96 Total: -154.21 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.05 Total: -23.01 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -77.89 2.79 -75.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996646237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.405 kcal (2) G-P(sol) polarization free energy of solvation -77.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds