Wall clock time and date at job start Wed Apr 1 2020 05:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30832 * 126.46665 * 2 1 4 4 N 1.28906 * 109.74449 * 180.02562 * 3 2 1 5 5 C 1.29844 * 109.47701 * 0.02562 * 4 3 2 6 6 N 1.34696 * 126.46653 * 180.02562 * 2 1 3 7 7 C 1.46262 * 128.84302 * 359.83334 * 6 2 1 8 8 C 1.53313 * 108.72704 * 197.11033 * 7 6 2 9 9 H 1.08999 * 109.44883 * 69.73815 * 8 7 6 10 10 C 1.50695 * 109.45482 * 189.69238 * 8 7 6 11 11 O 1.21284 * 119.99983 * 0.02562 * 10 8 7 12 12 N 1.34779 * 120.00400 * 179.97438 * 10 8 7 13 13 C 1.47421 * 125.64555 * 359.69640 * 12 10 8 14 14 C 1.55128 * 104.72359 * 155.81174 * 13 12 10 15 15 H 1.09005 * 110.90496 * 155.27581 * 14 13 12 16 16 N 1.46495 * 111.19535 * 279.18937 * 14 13 12 17 17 C 1.36936 * 120.00342 * 267.18716 * 16 14 13 18 18 H 1.07993 * 119.99729 * 359.97438 * 17 16 14 19 19 C 1.38818 * 120.00005 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99881 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99670 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47098 * 60.00158 * 21 19 17 23 23 H 1.48508 * 109.46752 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47077 * 299.99565 * 21 19 17 25 25 C 1.55160 * 101.48377 * 37.29806 * 14 13 12 26 26 C 1.52999 * 110.71915 * 205.96994 * 25 14 13 27 27 C 1.53000 * 110.72114 * 82.69345 * 25 14 13 28 28 C 1.47024 * 125.65225 * 179.97438 * 12 10 8 29 29 C 1.53138 * 109.58032 * 309.70725 * 8 7 6 30 30 C 1.50803 * 128.52244 * 179.85610 * 5 4 3 31 31 H 1.08997 * 109.46951 * 269.97683 * 1 2 3 32 32 H 1.09000 * 109.47056 * 29.97931 * 1 2 3 33 33 H 1.08995 * 109.47008 * 149.97717 * 1 2 3 34 34 H 1.09000 * 109.59215 * 316.88790 * 7 6 2 35 35 H 1.09003 * 109.59607 * 77.33823 * 7 6 2 36 36 H 1.08998 * 110.37187 * 274.74733 * 13 12 10 37 37 H 1.09006 * 110.36609 * 37.06622 * 13 12 10 38 38 H 0.97006 * 119.99553 * 87.18753 * 16 14 13 39 39 H 0.97004 * 119.99926 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.47154 * 174.97933 * 26 25 14 41 41 H 1.09007 * 109.47094 * 294.97396 * 26 25 14 42 42 H 1.09004 * 109.47272 * 54.97160 * 26 25 14 43 43 H 1.09004 * 109.47040 * 305.02204 * 27 25 14 44 44 H 1.08999 * 109.46801 * 65.02529 * 27 25 14 45 45 H 1.09000 * 109.46563 * 185.02458 * 27 25 14 46 46 H 1.09001 * 109.88311 * 300.44537 * 28 12 10 47 47 H 1.08997 * 109.87915 * 61.45312 * 28 12 10 48 48 H 1.09007 * 109.49577 * 189.38571 * 29 8 7 49 49 H 1.09000 * 109.49817 * 309.44777 * 29 8 7 50 50 H 1.08999 * 109.72951 * 315.58960 * 30 5 4 51 51 H 1.08996 * 109.72988 * 76.27182 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6813 -0.0005 5 6 3.5816 -0.6157 -0.0015 6 7 2.3076 -1.0832 -0.0005 7 6 1.9367 -2.4980 0.0022 8 6 3.1552 -3.3255 0.4276 9 1 3.3626 -3.1499 1.4832 10 6 2.8692 -4.7889 0.2091 11 8 1.7986 -5.1367 -0.2422 12 7 3.8036 -5.7111 0.5141 13 6 5.1436 -5.4285 1.0598 14 6 5.5529 -6.7320 1.7946 15 1 6.6377 -6.8178 1.8591 16 7 4.9426 -6.8043 3.1244 17 6 5.6224 -6.3345 4.2163 18 1 6.6087 -5.9110 4.0972 19 6 5.0443 -6.4036 5.4765 20 7 3.8425 -6.9203 5.6217 21 14 5.9714 -5.7620 6.9658 22 1 6.2622 -4.3173 6.7833 23 1 5.1428 -5.9507 8.1837 24 1 7.2464 -6.5088 7.1147 25 6 4.9643 -7.8154 0.8527 26 6 4.6669 -9.1015 1.6263 27 6 5.9138 -8.0915 -0.3148 28 6 3.6574 -7.1651 0.3523 29 6 4.3717 -2.9139 -0.4066 30 6 4.8052 -1.4971 -0.0053 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 1.1205 -2.6606 0.7061 35 1 1.6239 -2.7959 -0.9986 36 1 5.8432 -5.2092 0.2533 37 1 5.0994 -4.5957 1.7618 38 1 4.0569 -7.1851 3.2314 39 1 3.4386 -6.9689 6.5023 40 1 4.1734 -9.8159 0.9674 41 1 5.6003 -9.5295 1.9922 42 1 4.0154 -8.8754 2.4704 43 1 6.1360 -7.1575 -0.8311 44 1 6.8387 -8.5262 0.0640 45 1 5.4429 -8.7873 -1.0092 46 1 2.8151 -7.5212 0.9455 47 1 3.4992 -7.4070 -0.6986 48 1 5.1904 -3.6100 -0.2240 49 1 4.1096 -2.9299 -1.4645 50 1 5.5302 -1.1171 -0.7251 51 1 5.2488 -1.5152 0.9901 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996659985.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:15 Heat of formation + Delta-G solvation = 52.343975 kcal Electronic energy + Delta-G solvation = -32249.749460 eV Core-core repulsion = 28185.465236 eV Total energy + Delta-G solvation = -4064.284224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.39540 -40.45551 -38.49467 -36.74357 -34.41850 -33.97341 -33.36990 -31.64387 -30.86719 -30.58503 -28.22216 -27.46206 -26.84496 -26.71653 -24.52141 -24.05472 -23.20646 -21.72511 -21.42250 -20.06547 -19.11777 -18.76014 -17.52570 -17.24543 -16.71304 -16.27501 -15.73602 -15.59350 -15.12060 -14.76153 -14.51958 -14.27214 -14.11351 -14.03309 -13.91326 -13.63970 -13.26933 -13.02338 -12.92943 -12.86257 -12.72125 -12.49597 -12.35875 -12.02085 -11.99480 -11.70044 -11.61884 -11.56735 -11.38850 -11.22274 -11.07357 -10.98050 -10.64875 -10.57400 -10.38562 -10.36209 -10.19131 -10.02579 -9.79503 -9.72990 -9.13351 -9.03315 -8.44178 -7.16039 -5.94177 -3.24906 1.72689 2.28090 2.63779 2.79262 3.09944 3.32912 3.38252 3.39770 3.92899 4.12027 4.21257 4.36485 4.37261 4.42499 4.64164 4.74582 4.86257 4.93608 4.99147 5.01628 5.07630 5.13977 5.22630 5.26510 5.38672 5.40487 5.46045 5.51070 5.54197 5.59423 5.61486 5.71440 5.74589 5.76273 5.84149 5.89537 5.93243 6.03221 6.10561 6.11038 6.11861 6.21351 6.28329 6.41079 6.48528 6.62088 6.76197 6.82521 7.53026 7.66609 8.18552 8.23045 8.68075 9.35333 9.89140 10.23419 11.27337 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009636 B = 0.003592 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.981938 B = 7794.174897 C = 9333.950458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.177 3.823 3 N -0.302 5.302 4 N -0.293 5.293 5 C 0.176 3.824 6 N -0.468 5.468 7 C 0.126 3.874 8 C -0.119 4.119 9 H 0.115 0.885 10 C 0.541 3.459 11 O -0.553 6.553 12 N -0.594 5.594 13 C 0.062 3.938 14 C 0.179 3.821 15 H 0.076 0.924 16 N -0.707 5.707 17 C -0.252 4.252 18 H 0.072 0.928 19 C -0.004 4.004 20 N -0.927 5.927 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.284 1.284 25 C -0.090 4.090 26 C -0.127 4.127 27 C -0.132 4.132 28 C 0.122 3.878 29 C -0.125 4.125 30 C -0.031 4.031 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.387 0.613 39 H 0.258 0.742 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.101 0.899 49 H 0.075 0.925 50 H 0.104 0.896 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 3.251 -14.452 14.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.143 5.143 4 N -0.132 5.132 5 C -0.092 4.092 6 N -0.159 5.159 7 C 0.003 3.997 8 C -0.140 4.140 9 H 0.133 0.867 10 C 0.328 3.672 11 O -0.432 6.432 12 N -0.325 5.325 13 C -0.064 4.064 14 C 0.065 3.935 15 H 0.094 0.906 16 N -0.347 5.347 17 C -0.383 4.383 18 H 0.090 0.910 19 C -0.202 4.202 20 N -0.574 5.574 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.211 1.211 25 C -0.092 4.092 26 C -0.185 4.185 27 C -0.189 4.189 28 C 0.000 4.000 29 C -0.163 4.163 30 C -0.071 4.071 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.222 0.778 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.119 0.881 49 H 0.094 0.906 50 H 0.122 0.878 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.472 4.611 -14.520 15.242 hybrid contribution -0.297 -1.053 1.074 1.533 sum -0.768 3.558 -13.446 13.930 Atomic orbital electron populations 1.20218 0.83756 1.04489 1.04168 1.24646 0.97091 0.82762 1.04477 1.74453 0.96162 1.23727 1.19969 1.74027 1.12274 1.08070 1.18870 1.24725 0.87131 0.92540 1.04780 1.46002 1.07013 1.08530 1.54341 1.21757 0.97888 0.75167 1.04913 1.21522 0.95891 0.92797 1.03812 0.86744 1.19540 0.83280 0.86391 0.77976 1.90695 1.24063 1.81875 1.46579 1.48224 1.15578 1.06654 1.62081 1.23658 0.82357 1.03407 0.96945 1.21398 0.96858 0.89460 0.85735 0.90645 1.42364 1.19571 1.72599 1.00167 1.19172 0.99340 1.33833 0.85911 0.90995 1.24745 0.96630 1.01150 0.97629 1.69645 1.14983 1.49809 1.22977 0.86302 0.78840 0.78677 0.82529 1.21167 1.21673 1.21094 1.21940 0.94332 0.96832 0.96069 1.21643 1.02383 0.94697 0.99732 1.21763 0.99024 1.01185 0.96953 1.22019 0.98320 0.79430 1.00257 1.21895 0.97670 0.96729 0.99978 1.20242 0.91128 0.90880 1.04838 0.89511 0.88731 0.90310 0.87906 0.88110 0.92038 0.90025 0.77756 0.93245 0.93718 0.92217 0.90935 0.92779 0.92163 0.92776 0.91362 0.92046 0.88090 0.90583 0.87772 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.29 36.01 0.37 -0.21 16 2 C 0.18 2.32 8.07 -155.45 -1.25 1.07 16 3 N -0.30 -4.87 12.23 32.70 0.40 -4.47 16 4 N -0.29 -4.78 12.21 32.76 0.40 -4.38 16 5 C 0.18 2.37 7.75 -155.30 -1.20 1.17 16 6 N -0.47 -5.92 3.11 -110.86 -0.35 -6.27 16 7 C 0.13 1.43 5.46 -4.01 -0.02 1.41 16 8 C -0.12 -1.41 1.89 -91.54 -0.17 -1.58 16 9 H 0.11 1.48 7.83 -51.93 -0.41 1.07 16 10 C 0.54 7.95 7.21 -10.99 -0.08 7.87 16 11 O -0.55 -9.58 16.15 5.55 0.09 -9.49 16 12 N -0.59 -8.57 3.32 -170.39 -0.57 -9.13 16 13 C 0.06 0.85 4.53 -2.41 -0.01 0.84 16 14 C 0.18 2.86 2.96 -65.66 -0.19 2.66 16 15 H 0.08 1.19 7.99 -51.93 -0.41 0.78 16 16 N -0.71 -15.13 4.57 -51.24 -0.23 -15.37 16 17 C -0.25 -6.17 9.96 -15.06 -0.15 -6.32 16 18 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 19 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 20 N -0.93 -26.06 13.06 55.49 0.72 -25.34 16 21 Si 0.91 20.93 29.55 -169.99 -5.02 15.91 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.09 -1.22 0.80 -152.68 -0.12 -1.34 16 26 C -0.13 -1.85 8.16 37.16 0.30 -1.54 16 27 C -0.13 -1.40 8.44 37.16 0.31 -1.09 16 28 C 0.12 1.76 6.03 -3.07 -0.02 1.74 16 29 C -0.12 -1.19 5.11 -26.40 -0.13 -1.32 16 30 C -0.03 -0.31 6.34 -27.57 -0.17 -0.49 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.11 7.79 -51.93 -0.40 0.70 16 36 H 0.06 0.66 6.48 -51.93 -0.34 0.33 16 37 H 0.08 1.22 7.43 -51.93 -0.39 0.84 16 38 H 0.39 9.16 6.32 -40.82 -0.26 8.90 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 42 H 0.07 1.28 6.34 -51.93 -0.33 0.95 16 43 H 0.05 0.53 7.42 -51.93 -0.39 0.15 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.07 1.12 7.82 -51.93 -0.41 0.72 16 47 H 0.06 0.82 7.85 -51.93 -0.41 0.42 16 48 H 0.10 0.89 4.81 -51.93 -0.25 0.64 16 49 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 50 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -32.14 397.68 -9.38 -41.52 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -8.17 Total: 8.37 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -2.65 Total: 2.66 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: 0.38 Total: -64.96 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.14 -9.38 -41.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996659985.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.862 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds