Wall clock time and date at job start Wed Apr 1 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30842 * 126.46454 * 2 1 4 4 N 1.28906 * 109.73922 * 179.89090 * 3 2 1 5 5 C 1.29829 * 109.48231 * 0.43318 * 4 3 2 6 6 N 1.34692 * 126.46963 * 180.30678 * 2 1 3 7 7 C 1.46263 * 128.84092 * 359.84897 * 6 2 1 8 8 C 1.53324 * 108.72735 * 197.09126 * 7 6 2 9 9 H 1.09007 * 109.44523 * 69.74766 * 8 7 6 10 10 C 1.50700 * 109.45056 * 189.67770 * 8 7 6 11 11 O 1.21280 * 120.00156 * 0.02562 * 10 8 7 12 12 N 1.34781 * 119.99690 * 180.02562 * 10 8 7 13 13 C 1.46502 * 119.99793 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.46795 * 180.02562 * 13 12 10 15 15 C 1.53045 * 109.45977 * 295.06478 * 14 13 12 16 16 C 1.53191 * 109.31307 * 178.61722 * 15 14 13 17 17 N 1.46932 * 108.77185 * 54.63616 * 16 15 14 18 18 C 1.36934 * 120.62651 * 126.41924 * 17 16 15 19 19 H 1.07999 * 120.00270 * 332.59479 * 18 17 16 20 20 C 1.38818 * 120.00214 * 152.60412 * 18 17 16 21 21 N 1.31611 * 119.99996 * 159.35608 * 20 18 17 22 22 Si 1.86807 * 119.99416 * 339.35533 * 20 18 17 23 23 H 1.48494 * 109.47054 * 92.91428 * 22 20 18 24 24 H 1.48503 * 109.46767 * 212.90925 * 22 20 18 25 25 H 1.48499 * 109.47303 * 332.91176 * 22 20 18 26 26 C 1.46925 * 118.73953 * 306.38646 * 17 16 15 27 27 C 1.53045 * 109.45882 * 175.00002 * 14 13 12 28 28 C 1.53140 * 109.58180 * 309.71671 * 8 7 6 29 29 C 1.50804 * 128.52897 * 179.61951 * 5 4 3 30 30 H 1.08994 * 109.47316 * 269.68968 * 1 2 3 31 31 H 1.09000 * 109.46982 * 149.69112 * 1 2 3 32 32 H 1.08997 * 109.47542 * 29.69334 * 1 2 3 33 33 H 1.08990 * 109.59972 * 316.86969 * 7 6 2 34 34 H 1.08999 * 109.59058 * 77.32529 * 7 6 2 35 35 H 0.96999 * 120.00078 * 0.02562 * 12 10 8 36 36 H 1.09009 * 109.46698 * 299.99721 * 13 12 10 37 37 H 1.08995 * 109.47356 * 59.99825 * 13 12 10 38 38 H 1.09002 * 109.46607 * 55.02547 * 14 13 12 39 39 H 1.09004 * 109.49711 * 298.56916 * 15 14 13 40 40 H 1.08995 * 109.49478 * 58.66137 * 15 14 13 41 41 H 1.08999 * 109.58809 * 294.85282 * 16 15 14 42 42 H 1.09000 * 109.58759 * 174.42235 * 16 15 14 43 43 H 0.97004 * 119.99791 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.58934 * 293.82629 * 26 17 16 45 45 H 1.09005 * 109.58646 * 173.40334 * 26 17 16 46 46 H 1.09002 * 109.49558 * 301.33336 * 27 14 13 47 47 H 1.08996 * 109.49721 * 61.39762 * 27 14 13 48 48 H 1.09003 * 109.49356 * 189.38061 * 28 8 7 49 49 H 1.08997 * 109.49900 * 309.44714 * 28 8 7 50 50 H 1.09004 * 109.72805 * 76.27310 * 29 5 4 51 51 H 1.09001 * 109.76829 * 315.61269 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5191 0.6813 0.0023 5 6 3.5816 -0.6155 -0.0054 6 7 2.3075 -1.0831 -0.0058 7 6 1.9367 -2.4979 -0.0104 8 6 3.1553 -3.3277 0.4107 9 1 3.3627 -3.1575 1.4672 10 6 2.8691 -4.7899 0.1849 11 8 1.7983 -5.1354 -0.2678 12 7 3.8031 -5.7137 0.4861 13 6 3.5251 -7.1352 0.2661 14 6 4.7404 -7.9636 0.6875 15 6 5.9233 -7.6347 -0.2262 16 6 7.1476 -8.4401 0.2201 17 7 6.7895 -9.8647 0.2544 18 6 7.5385 -10.7888 -0.4239 19 1 8.0898 -10.4955 -1.3050 20 6 7.5891 -12.1028 0.0209 21 7 7.9464 -13.0637 -0.8045 22 14 7.1501 -12.5071 1.7911 23 1 5.7103 -12.8605 1.8756 24 1 7.9696 -13.6556 2.2543 25 1 7.4213 -11.3268 2.6504 26 6 5.6130 -10.2789 1.0309 27 6 4.4059 -9.4529 0.5755 28 6 4.3718 -2.9116 -0.4213 29 6 4.8051 -1.4970 -0.0141 30 1 -0.3633 -0.0056 1.0276 31 1 -0.3633 -0.8872 -0.5186 32 1 -0.3634 0.8927 -0.5090 33 1 1.1206 -2.6643 0.6927 34 1 1.6239 -2.7905 -1.0127 35 1 4.6594 -5.4374 0.8486 36 1 2.6600 -7.4322 0.8592 37 1 3.3173 -7.3056 -0.7902 38 1 5.0017 -7.7267 1.7189 39 1 5.6720 -7.8946 -1.2546 40 1 6.1460 -6.5695 -0.1638 41 1 7.4551 -8.1166 1.2145 42 1 7.9638 -8.2854 -0.4855 43 1 7.9822 -13.9818 -0.4935 44 1 5.7954 -10.1053 2.0914 45 1 5.4167 -11.3375 0.8603 46 1 3.5487 -9.6818 1.2087 47 1 4.1683 -9.6955 -0.4602 48 1 5.1905 -3.6086 -0.2423 49 1 4.1098 -2.9220 -1.4793 50 1 5.2489 -1.5203 0.9813 51 1 5.5306 -1.1135 -0.7315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002145540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:10 Heat of formation + Delta-G solvation = 50.771443 kcal Electronic energy + Delta-G solvation = -30673.543654 eV Core-core repulsion = 26609.191240 eV Total energy + Delta-G solvation = -4064.352414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.69533 -40.51953 -38.39679 -37.21034 -35.40028 -34.55827 -33.09347 -32.03966 -31.19133 -30.85961 -30.44979 -27.75931 -27.42590 -25.34633 -23.95324 -23.61542 -22.82458 -21.80511 -21.39721 -20.93069 -20.01485 -19.45126 -17.99047 -17.06610 -16.88098 -16.62141 -16.32166 -15.86401 -15.37510 -15.23611 -14.80693 -14.63013 -14.40234 -14.25650 -14.09130 -14.00269 -13.61702 -13.50977 -13.36190 -13.11098 -12.95685 -12.77272 -12.65965 -12.49815 -12.14191 -11.97784 -11.86460 -11.78432 -11.60939 -11.50184 -10.92991 -10.75827 -10.66555 -10.61485 -10.51758 -10.29292 -10.20885 -9.97595 -9.75894 -9.50567 -9.33831 -9.32844 -8.68886 -7.05345 -6.00945 -3.37172 1.42648 1.95361 2.15377 2.51404 2.79388 3.25784 3.42717 3.44806 3.54969 3.77002 3.92263 3.97586 4.07645 4.38934 4.46567 4.48150 4.55954 4.66450 4.77539 4.79601 4.85520 4.95668 4.96601 4.99443 5.08467 5.10285 5.18112 5.26137 5.34641 5.38992 5.44057 5.54489 5.57744 5.62351 5.74601 5.77201 5.82508 5.94293 6.04889 6.07104 6.23642 6.27495 6.36795 6.45923 6.52664 6.55935 6.60109 6.85769 7.10589 7.77945 7.89729 8.26674 8.40074 8.87647 9.65737 10.02947 11.14982 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028552 B = 0.001918 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.437334 B =14591.369218 C =15138.237361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.300 5.300 4 N -0.290 5.290 5 C 0.172 3.828 6 N -0.470 5.470 7 C 0.124 3.876 8 C -0.124 4.124 9 H 0.112 0.888 10 C 0.523 3.477 11 O -0.539 6.539 12 N -0.718 5.718 13 C 0.123 3.877 14 C -0.092 4.092 15 C -0.129 4.129 16 C 0.148 3.852 17 N -0.606 5.606 18 C -0.261 4.261 19 H 0.085 0.915 20 C 0.023 3.977 21 N -0.907 5.907 22 Si 0.883 3.117 23 H -0.289 1.289 24 H -0.303 1.303 25 H -0.272 1.272 26 C 0.126 3.874 27 C -0.126 4.126 28 C -0.119 4.119 29 C -0.031 4.031 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.402 0.598 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.021 0.979 42 H 0.063 0.937 43 H 0.263 0.737 44 H 0.024 0.976 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 22.137 3.979 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 N -0.141 5.141 4 N -0.129 5.129 5 C -0.095 4.095 6 N -0.161 5.161 7 C 0.001 3.999 8 C -0.146 4.146 9 H 0.130 0.870 10 C 0.307 3.693 11 O -0.416 6.416 12 N -0.369 5.369 13 C 0.000 4.000 14 C -0.111 4.111 15 C -0.168 4.168 16 C 0.022 3.978 17 N -0.329 5.329 18 C -0.390 4.390 19 H 0.103 0.897 20 C -0.176 4.176 21 N -0.550 5.550 22 Si 0.714 3.286 23 H -0.216 1.216 24 H -0.231 1.231 25 H -0.197 1.197 26 C 0.001 3.999 27 C -0.166 4.166 28 C -0.158 4.158 29 C -0.071 4.071 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.238 0.762 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.039 0.961 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.042 0.958 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.113 0.887 49 H 0.100 0.900 50 H 0.118 0.882 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.775 23.125 3.612 26.665 hybrid contribution -0.259 -1.657 1.224 2.077 sum -13.034 21.468 4.837 25.576 Atomic orbital electron populations 1.20234 0.83620 1.04735 1.04133 1.24695 0.97146 0.82687 1.04257 1.74500 0.96116 1.23657 1.19797 1.74051 1.12309 1.08032 1.18507 1.24720 0.87038 0.92622 1.05149 1.46000 1.07025 1.08431 1.54693 1.21752 0.97550 0.75312 1.05270 1.21634 0.96470 0.92961 1.03506 0.87015 1.19985 0.84352 0.86903 0.78036 1.90747 1.24256 1.82003 1.44596 1.46040 1.18203 1.07381 1.65272 1.21615 0.98394 0.78191 1.01826 1.21319 0.94010 0.95815 0.99923 1.22085 0.96496 0.98444 0.99776 1.20913 0.94405 0.84361 0.98131 1.44347 1.27453 1.02711 1.58423 1.18911 1.25190 0.89025 1.05827 0.89737 1.25293 0.98852 0.95840 0.97637 1.69835 1.51144 0.99865 1.34153 0.86946 0.76718 0.77271 0.87665 1.21637 1.23139 1.19664 1.21326 0.86415 0.98296 0.93909 1.21998 0.98904 0.93430 1.02270 1.21762 0.96736 0.96617 1.00667 1.20230 0.91242 0.90824 1.04784 0.89520 0.90242 0.88562 0.87887 0.87871 0.76234 0.91480 0.91090 0.91112 0.91612 0.93078 0.96120 0.91847 0.92731 0.95787 0.90819 0.92560 0.91305 0.88662 0.89988 0.88236 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.28 36.00 0.37 0.01 16 2 C 0.18 1.72 8.07 -155.45 -1.25 0.46 16 3 N -0.30 -3.88 12.23 32.70 0.40 -3.48 16 4 N -0.29 -3.75 12.21 32.76 0.40 -3.35 16 5 C 0.17 1.64 7.75 -155.31 -1.20 0.44 16 6 N -0.47 -4.01 3.11 -110.86 -0.35 -4.35 16 7 C 0.12 0.81 5.46 -4.00 -0.02 0.79 16 8 C -0.12 -0.70 2.54 -91.53 -0.23 -0.94 16 9 H 0.11 0.49 8.12 -51.93 -0.42 0.07 16 10 C 0.52 4.47 7.15 -10.98 -0.08 4.39 16 11 O -0.54 -6.64 15.83 5.56 0.09 -6.55 16 12 N -0.72 -5.75 5.10 -60.29 -0.31 -6.06 16 13 C 0.12 1.30 5.06 -4.04 -0.02 1.28 16 14 C -0.09 -1.13 2.19 -90.57 -0.20 -1.32 16 15 C -0.13 -1.69 5.25 -26.61 -0.14 -1.83 16 16 C 0.15 2.57 6.52 -3.71 -0.02 2.54 16 17 N -0.61 -13.39 2.77 -172.32 -0.48 -13.86 16 18 C -0.26 -7.01 10.03 -15.06 -0.15 -7.16 16 19 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 20 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 21 N -0.91 -27.18 13.97 55.49 0.78 -26.41 16 22 Si 0.88 21.66 24.35 -169.99 -4.14 17.52 16 23 H -0.29 -6.81 6.62 56.52 0.37 -6.44 16 24 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 25 H -0.27 -6.50 6.64 56.52 0.38 -6.13 16 26 C 0.13 2.54 4.20 -3.71 -0.02 2.52 16 27 C -0.13 -1.95 5.36 -26.61 -0.14 -2.10 16 28 C -0.12 -0.56 5.22 -26.42 -0.14 -0.70 16 29 C -0.03 -0.17 6.33 -27.60 -0.17 -0.35 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.31 8.04 -51.93 -0.42 -0.11 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.73 7.80 -51.93 -0.40 0.33 16 35 H 0.40 2.33 6.98 -40.82 -0.28 2.04 16 36 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.50 7.15 -51.93 -0.37 0.13 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.02 0.48 7.07 -51.93 -0.37 0.11 16 45 H 0.07 1.67 4.50 -51.93 -0.23 1.44 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.09 0.30 7.32 -51.93 -0.38 -0.08 16 49 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 50 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 393.66 15.07 5.93 5.93 Total: -1.00 -35.51 393.66 -9.59 -45.10 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -8.40 Total: -3.07 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -3.52 Total: -1.41 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.45 Total: -57.51 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: 0.09 Total: -6.55 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.51 -9.59 -45.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002145540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.868 kcal (2) G-P(sol) polarization free energy of solvation -35.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds