Wall clock time and date at job start Wed Apr 1 2020 05:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30842 * 126.46454 * 2 1 4 4 N 1.28906 * 109.73922 * 179.89090 * 3 2 1 5 5 C 1.29829 * 109.48231 * 0.43318 * 4 3 2 6 6 N 1.34692 * 126.46963 * 180.30678 * 2 1 3 7 7 C 1.46263 * 128.84092 * 359.84897 * 6 2 1 8 8 C 1.53324 * 108.72735 * 197.09126 * 7 6 2 9 9 H 1.09007 * 109.44523 * 69.74766 * 8 7 6 10 10 C 1.50700 * 109.45056 * 189.67770 * 8 7 6 11 11 O 1.21280 * 120.00156 * 0.02562 * 10 8 7 12 12 N 1.34781 * 119.99690 * 180.02562 * 10 8 7 13 13 C 1.46502 * 119.99793 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.46795 * 180.02562 * 13 12 10 15 15 C 1.53045 * 109.45977 * 295.06478 * 14 13 12 16 16 C 1.53191 * 109.31307 * 178.61722 * 15 14 13 17 17 N 1.46932 * 108.77185 * 54.63616 * 16 15 14 18 18 C 1.36934 * 120.62651 * 126.41924 * 17 16 15 19 19 H 1.07999 * 120.00270 * 332.59479 * 18 17 16 20 20 C 1.38818 * 120.00214 * 152.60412 * 18 17 16 21 21 N 1.31611 * 119.99996 * 159.35608 * 20 18 17 22 22 Si 1.86807 * 119.99416 * 339.35533 * 20 18 17 23 23 H 1.48494 * 109.47054 * 92.91428 * 22 20 18 24 24 H 1.48503 * 109.46767 * 212.90925 * 22 20 18 25 25 H 1.48499 * 109.47303 * 332.91176 * 22 20 18 26 26 C 1.46925 * 118.73953 * 306.38646 * 17 16 15 27 27 C 1.53045 * 109.45882 * 175.00002 * 14 13 12 28 28 C 1.53140 * 109.58180 * 309.71671 * 8 7 6 29 29 C 1.50804 * 128.52897 * 179.61951 * 5 4 3 30 30 H 1.08994 * 109.47316 * 269.68968 * 1 2 3 31 31 H 1.09000 * 109.46982 * 149.69112 * 1 2 3 32 32 H 1.08997 * 109.47542 * 29.69334 * 1 2 3 33 33 H 1.08990 * 109.59972 * 316.86969 * 7 6 2 34 34 H 1.08999 * 109.59058 * 77.32529 * 7 6 2 35 35 H 0.96999 * 120.00078 * 0.02562 * 12 10 8 36 36 H 1.09009 * 109.46698 * 299.99721 * 13 12 10 37 37 H 1.08995 * 109.47356 * 59.99825 * 13 12 10 38 38 H 1.09002 * 109.46607 * 55.02547 * 14 13 12 39 39 H 1.09004 * 109.49711 * 298.56916 * 15 14 13 40 40 H 1.08995 * 109.49478 * 58.66137 * 15 14 13 41 41 H 1.08999 * 109.58809 * 294.85282 * 16 15 14 42 42 H 1.09000 * 109.58759 * 174.42235 * 16 15 14 43 43 H 0.97004 * 119.99791 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.58934 * 293.82629 * 26 17 16 45 45 H 1.09005 * 109.58646 * 173.40334 * 26 17 16 46 46 H 1.09002 * 109.49558 * 301.33336 * 27 14 13 47 47 H 1.08996 * 109.49721 * 61.39762 * 27 14 13 48 48 H 1.09003 * 109.49356 * 189.38061 * 28 8 7 49 49 H 1.08997 * 109.49900 * 309.44714 * 28 8 7 50 50 H 1.09004 * 109.72805 * 76.27310 * 29 5 4 51 51 H 1.09001 * 109.76829 * 315.61269 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5191 0.6813 0.0023 5 6 3.5816 -0.6155 -0.0054 6 7 2.3075 -1.0831 -0.0058 7 6 1.9367 -2.4979 -0.0104 8 6 3.1553 -3.3277 0.4107 9 1 3.3627 -3.1575 1.4672 10 6 2.8691 -4.7899 0.1849 11 8 1.7983 -5.1354 -0.2678 12 7 3.8031 -5.7137 0.4861 13 6 3.5251 -7.1352 0.2661 14 6 4.7404 -7.9636 0.6875 15 6 5.9233 -7.6347 -0.2262 16 6 7.1476 -8.4401 0.2201 17 7 6.7895 -9.8647 0.2544 18 6 7.5385 -10.7888 -0.4239 19 1 8.0898 -10.4955 -1.3050 20 6 7.5891 -12.1028 0.0209 21 7 7.9464 -13.0637 -0.8045 22 14 7.1501 -12.5071 1.7911 23 1 5.7103 -12.8605 1.8756 24 1 7.9696 -13.6556 2.2543 25 1 7.4213 -11.3268 2.6504 26 6 5.6130 -10.2789 1.0309 27 6 4.4059 -9.4529 0.5755 28 6 4.3718 -2.9116 -0.4213 29 6 4.8051 -1.4970 -0.0141 30 1 -0.3633 -0.0056 1.0276 31 1 -0.3633 -0.8872 -0.5186 32 1 -0.3634 0.8927 -0.5090 33 1 1.1206 -2.6643 0.6927 34 1 1.6239 -2.7905 -1.0127 35 1 4.6594 -5.4374 0.8486 36 1 2.6600 -7.4322 0.8592 37 1 3.3173 -7.3056 -0.7902 38 1 5.0017 -7.7267 1.7189 39 1 5.6720 -7.8946 -1.2546 40 1 6.1460 -6.5695 -0.1638 41 1 7.4551 -8.1166 1.2145 42 1 7.9638 -8.2854 -0.4855 43 1 7.9822 -13.9818 -0.4935 44 1 5.7954 -10.1053 2.0914 45 1 5.4167 -11.3375 0.8603 46 1 3.5487 -9.6818 1.2087 47 1 4.1683 -9.6955 -0.4602 48 1 5.1905 -3.6086 -0.2423 49 1 4.1098 -2.9220 -1.4793 50 1 5.2489 -1.5203 0.9813 51 1 5.5306 -1.1135 -0.7315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001002145540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:08 Heat of formation + Delta-G solvation = 26.973522 kcal Electronic energy + Delta-G solvation = -30674.575609 eV Core-core repulsion = 26609.191240 eV Total energy + Delta-G solvation = -4065.384369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.37498 -41.21610 -39.62676 -37.86669 -36.50481 -35.19105 -34.49601 -33.07484 -32.40214 -31.83494 -31.41430 -28.64861 -28.33873 -26.28228 -25.18753 -24.39801 -24.01750 -22.79432 -22.39438 -21.64880 -20.90134 -20.40973 -18.83466 -18.50410 -17.69732 -17.42251 -17.11381 -16.89000 -16.53550 -15.97045 -15.86230 -15.49182 -15.24092 -15.19960 -15.04225 -14.97476 -14.72047 -14.59140 -14.39482 -13.95158 -13.88967 -13.61266 -13.50682 -13.38693 -13.23585 -13.16955 -12.89839 -12.62219 -12.52434 -12.24660 -12.22497 -12.10061 -12.04505 -11.70551 -11.56826 -11.38015 -11.28423 -11.17056 -11.14661 -10.91729 -10.64210 -10.08365 -10.03625 -8.89253 -8.15013 -5.45687 0.78769 1.30927 1.35932 1.42180 1.51167 1.52467 1.76843 2.15047 2.43044 3.06072 3.08258 3.26077 3.38940 3.41698 3.54926 3.58418 3.82145 3.90225 3.91548 3.99179 4.02837 4.13554 4.26814 4.32880 4.42100 4.47890 4.56462 4.58264 4.61519 4.66694 4.68405 4.77467 4.80438 4.83239 4.84992 4.92614 4.96655 5.00250 5.04988 5.05600 5.13664 5.21226 5.23043 5.26090 5.32479 5.39794 5.64356 5.87896 5.89782 6.14749 6.50409 6.96148 7.17583 7.66892 7.67108 8.06143 9.05056 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028552 B = 0.001918 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.437334 B =14591.369218 C =15138.237361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.179 3.821 3 N -0.348 5.348 4 N -0.338 5.338 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.123 3.877 8 C -0.112 4.112 9 H 0.135 0.865 10 C 0.528 3.472 11 O -0.578 6.578 12 N -0.707 5.707 13 C 0.135 3.865 14 C -0.080 4.080 15 C -0.118 4.118 16 C 0.139 3.861 17 N -0.622 5.622 18 C -0.245 4.245 19 H 0.049 0.951 20 C -0.041 4.041 21 N -0.960 5.960 22 Si 0.950 3.050 23 H -0.276 1.276 24 H -0.315 1.315 25 H -0.257 1.257 26 C 0.119 3.881 27 C -0.122 4.122 28 C -0.113 4.113 29 C -0.028 4.028 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.418 0.582 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.050 0.950 43 H 0.260 0.740 44 H 0.037 0.963 45 H 0.043 0.957 46 H 0.081 0.919 47 H 0.050 0.950 48 H 0.120 0.880 49 H 0.071 0.929 50 H 0.121 0.879 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.543 23.694 6.287 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.188 5.188 4 N -0.177 5.177 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.134 4.134 9 H 0.153 0.847 10 C 0.314 3.686 11 O -0.458 6.458 12 N -0.359 5.359 13 C 0.011 3.989 14 C -0.099 4.099 15 C -0.157 4.157 16 C 0.015 3.985 17 N -0.347 5.347 18 C -0.375 4.375 19 H 0.067 0.933 20 C -0.236 4.236 21 N -0.607 5.607 22 Si 0.779 3.221 23 H -0.203 1.203 24 H -0.245 1.245 25 H -0.181 1.181 26 C -0.006 4.006 27 C -0.161 4.161 28 C -0.152 4.152 29 C -0.068 4.068 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.256 0.744 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.069 0.931 48 H 0.139 0.861 49 H 0.090 0.910 50 H 0.139 0.861 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.840 24.754 5.950 28.978 hybrid contribution 0.069 -2.084 0.415 2.126 sum -13.771 22.670 6.365 27.278 Atomic orbital electron populations 1.20419 0.81032 1.05706 1.05436 1.25379 0.98590 0.82387 1.02598 1.74393 0.96752 1.25615 1.22067 1.73939 1.12793 1.10114 1.20811 1.25437 0.88527 0.92244 1.03255 1.46123 1.06649 1.08930 1.54334 1.21861 0.98499 0.74263 1.05321 1.21573 0.96316 0.90503 1.05003 0.84732 1.20332 0.83576 0.87828 0.76900 1.90747 1.25993 1.82735 1.46328 1.45859 1.18884 1.06198 1.65003 1.21275 0.97360 0.79384 1.00862 1.21187 0.94176 0.93697 1.00837 1.21965 0.94789 1.00272 0.98631 1.21169 0.96195 0.82116 0.99030 1.44517 1.27915 1.03932 1.58352 1.18868 1.24024 0.89955 1.04667 0.93328 1.25959 1.00263 0.95900 1.01440 1.69981 1.54489 1.00148 1.36051 0.85866 0.76799 0.76852 0.82597 1.20288 1.24461 1.18093 1.21388 0.87405 0.97529 0.94253 1.21887 0.97545 0.95146 1.01531 1.21766 0.96991 0.96541 0.99852 1.20441 0.89724 0.90303 1.06294 0.87936 0.88562 0.88256 0.86820 0.88555 0.74445 0.91435 0.92614 0.89040 0.93602 0.88555 0.94078 0.93112 0.93131 0.94541 0.93889 0.90080 0.93070 0.86136 0.90980 0.86070 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.28 71.23 0.73 0.12 16 2 C 0.18 3.27 8.07 138.14 1.11 4.38 16 3 N -0.35 -9.07 12.23 -50.47 -0.62 -9.69 16 4 N -0.34 -8.70 12.21 -50.28 -0.61 -9.32 16 5 C 0.17 3.04 7.75 138.14 1.07 4.11 16 6 N -0.47 -7.18 3.11 -504.66 -1.57 -8.75 16 7 C 0.12 1.29 5.46 86.53 0.47 1.76 16 8 C -0.11 -0.83 2.54 -11.38 -0.03 -0.86 16 9 H 0.13 0.48 8.12 -2.38 -0.02 0.47 16 10 C 0.53 7.02 7.15 87.66 0.63 7.64 16 11 O -0.58 -12.74 15.83 -3.03 -0.05 -12.79 16 12 N -0.71 -7.96 5.10 -463.05 -2.36 -10.32 16 13 C 0.14 2.33 5.06 86.38 0.44 2.77 16 14 C -0.08 -1.63 2.19 -10.76 -0.02 -1.65 16 15 C -0.12 -2.66 5.25 30.67 0.16 -2.50 16 16 C 0.14 4.49 6.52 86.36 0.56 5.05 16 17 N -0.62 -26.87 2.77 -699.08 -1.94 -28.81 16 18 C -0.25 -13.44 10.03 84.04 0.84 -12.60 16 19 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 20 C -0.04 -2.37 5.23 84.86 0.44 -1.92 16 21 N -0.96 -59.80 13.97 21.65 0.30 -59.50 16 22 Si 0.95 45.22 24.35 68.60 1.67 46.89 16 23 H -0.28 -12.42 6.62 99.48 0.66 -11.76 16 24 H -0.32 -15.49 7.11 99.48 0.71 -14.78 16 25 H -0.26 -11.42 6.64 99.48 0.66 -10.76 16 26 C 0.12 4.54 4.20 86.36 0.36 4.91 16 27 C -0.12 -3.43 5.36 30.67 0.16 -3.27 16 28 C -0.11 -0.62 5.22 30.79 0.16 -0.45 16 29 C -0.03 -0.22 6.33 30.03 0.19 -0.03 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.54 8.04 -2.39 -0.02 0.52 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.18 7.80 -2.39 -0.02 1.16 16 35 H 0.42 2.25 6.98 -92.71 -0.65 1.60 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.10 1.34 7.15 -2.39 -0.02 1.32 16 41 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.05 1.73 7.93 -2.39 -0.02 1.72 16 43 H 0.26 15.43 8.31 -92.70 -0.77 14.65 16 44 H 0.04 1.31 7.07 -2.39 -0.02 1.30 16 45 H 0.04 1.90 4.50 -2.38 -0.01 1.89 16 46 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.12 0.09 7.32 -2.39 -0.02 0.07 16 49 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 50 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 51 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -82.83 393.66 2.31 -80.52 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 0.19 Total: 4.31 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 7.29 Total: 7.46 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -6.80 Total: -126.39 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.05 Total: -12.79 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.67 Total: 46.89 kcal Total: -82.83 2.31 -80.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002145540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.490 kcal (2) G-P(sol) polarization free energy of solvation -82.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds