Wall clock time and date at job start Wed Apr 1 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30828 * 125.96730 * 2 1 4 4 C 1.33240 * 109.83027 * 180.02562 * 3 2 1 5 5 C 1.50709 * 125.52224 * 179.97438 * 4 3 2 6 6 C 1.50692 * 109.47233 * 90.00123 * 5 4 3 7 7 O 1.21283 * 120.00129 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00238 * 179.97438 * 6 5 4 9 9 C 1.46918 * 120.63327 * 179.97438 * 8 6 5 10 10 C 1.53188 * 108.78154 * 233.63251 * 9 8 6 11 11 C 1.53040 * 109.31008 * 305.36705 * 10 9 8 12 12 C 1.53004 * 109.45974 * 181.38231 * 11 10 9 13 13 H 1.09002 * 109.87342 * 60.97066 * 12 11 10 14 14 C 1.54321 * 109.88450 * 299.79117 * 12 11 10 15 15 C 1.55156 * 102.94628 * 218.39076 * 14 12 11 16 16 C 1.54690 * 101.67411 * 35.33580 * 15 14 12 17 17 N 1.47023 * 109.88152 * 181.98287 * 12 11 10 18 18 C 1.36929 * 125.65251 * 298.32157 * 17 12 11 19 19 H 1.07999 * 120.00110 * 345.13460 * 18 17 12 20 20 C 1.38816 * 120.00564 * 165.40877 * 18 17 12 21 21 N 1.31624 * 119.99565 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00411 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47084 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47183 * 119.99835 * 22 20 18 25 25 H 1.48507 * 109.46972 * 240.00163 * 22 20 18 26 26 C 1.53044 * 109.54039 * 61.36484 * 11 10 9 27 27 C 1.46924 * 120.62904 * 0.02562 * 8 6 5 28 28 N 1.30705 * 108.94949 * 0.25875 * 4 3 2 29 29 N 1.34433 * 125.95973 * 180.02562 * 2 1 3 30 30 H 0.97001 * 126.81961 * 359.97438 * 29 2 1 31 31 H 1.09000 * 109.46348 * 89.97715 * 1 2 3 32 32 H 1.08997 * 109.47628 * 209.98432 * 1 2 3 33 33 H 1.09006 * 109.46909 * 329.98479 * 1 2 3 34 34 H 1.08997 * 109.46935 * 329.99478 * 5 4 3 35 35 H 1.09004 * 109.46526 * 210.00006 * 5 4 3 36 36 H 1.09007 * 109.59002 * 113.84449 * 9 8 6 37 37 H 1.09005 * 109.70625 * 353.49403 * 9 8 6 38 38 H 1.08998 * 109.50002 * 185.41541 * 10 9 8 39 39 H 1.08999 * 109.49573 * 65.31562 * 10 9 8 40 40 H 1.08997 * 109.46168 * 301.35462 * 11 10 9 41 41 H 1.09004 * 110.71840 * 336.75612 * 14 12 11 42 42 H 1.09002 * 110.72079 * 100.02375 * 14 12 11 43 43 H 1.08996 * 111.00567 * 153.57595 * 15 14 12 44 44 H 1.09002 * 111.00212 * 277.43049 * 15 14 12 45 45 H 1.09007 * 110.38941 * 204.36408 * 16 15 14 46 46 H 1.09004 * 110.23900 * 82.11406 * 16 15 14 47 47 H 0.96996 * 119.99945 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.49475 * 58.58287 * 26 11 10 49 49 H 1.09000 * 109.49803 * 178.68500 * 26 11 10 50 50 H 1.09000 * 109.58841 * 246.15575 * 27 8 6 51 51 H 1.09002 * 109.58891 * 6.43561 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6885 -0.0006 5 6 4.7374 1.6234 -0.0013 6 6 5.1321 1.9353 1.4192 7 8 4.5141 1.4469 2.3415 8 7 6.1718 2.7569 1.6649 9 6 6.5682 3.0708 3.0443 10 6 6.6109 4.5930 3.2109 11 6 7.5264 5.1936 2.1417 12 6 7.5988 6.7107 2.3264 13 1 8.0127 6.9453 3.3072 14 6 6.1897 7.3243 2.1873 15 6 6.4606 8.6476 1.4238 16 6 7.6159 8.2345 0.4817 17 7 8.4385 7.3029 1.2748 18 6 9.7661 7.0377 1.0696 19 1 10.3417 6.5388 1.8353 20 6 10.3736 7.4149 -0.1201 21 7 9.6733 8.0273 -1.0513 22 14 12.1845 7.0524 -0.4003 23 1 12.7407 6.3606 0.7901 24 1 12.3363 6.1830 -1.5945 25 1 12.9163 8.3260 -0.6189 26 6 6.9687 4.8752 0.7526 27 6 6.9297 3.3566 0.5582 28 7 3.6194 -0.6169 -0.0065 29 7 2.2964 -1.0881 -0.0005 30 1 2.0092 -2.0147 -0.0006 31 1 -0.3632 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5136 33 1 -0.3633 0.8899 0.5141 34 1 4.4700 2.5467 -0.5152 35 1 5.5741 1.1506 -0.5155 36 1 7.5550 2.6535 3.2449 37 1 5.8441 2.6472 3.7403 38 1 6.9961 4.8400 4.2002 39 1 5.6058 4.9995 3.0993 40 1 8.5252 4.7680 2.2381 41 1 5.5398 6.6699 1.6063 42 1 5.7584 7.5261 3.1678 43 1 5.5833 8.9578 0.8562 44 1 6.7803 9.4344 2.1070 45 1 8.2020 9.1075 0.1941 46 1 7.2210 7.7337 -0.4022 47 1 10.0978 8.2912 -1.8825 48 1 5.9601 5.2791 0.6642 49 1 7.6084 5.3232 -0.0078 50 1 7.9460 2.9626 0.5556 51 1 6.4436 3.1197 -0.3882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004431980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:46 Heat of formation + Delta-G solvation = 68.821667 kcal Electronic energy + Delta-G solvation = -31479.063156 eV Core-core repulsion = 27415.493458 eV Total energy + Delta-G solvation = -4063.569697 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.33704 -40.08955 -38.38038 -36.29037 -33.91706 -33.03733 -32.56890 -32.18604 -31.04059 -29.83767 -29.31712 -28.06949 -27.34302 -24.69285 -23.83646 -23.02288 -21.96866 -21.33158 -20.70798 -19.97767 -19.20923 -18.19267 -18.05057 -17.21034 -16.52957 -15.99369 -15.54728 -15.37552 -15.04772 -14.66459 -14.58705 -13.99337 -13.88989 -13.82207 -13.66190 -13.29817 -13.25957 -13.09511 -12.84168 -12.58480 -12.21665 -12.08823 -11.99740 -11.95527 -11.81127 -11.42341 -11.22229 -10.93788 -10.90282 -10.77069 -10.41957 -10.34140 -10.19962 -10.12594 -10.02441 -9.84245 -9.80382 -9.66276 -9.55402 -9.51532 -9.38235 -8.56877 -8.43425 -6.73283 -5.73128 -3.07515 1.38490 2.39255 2.58890 2.70366 3.21229 3.38198 3.45465 3.46755 3.74432 4.30632 4.49458 4.51334 4.61777 4.93792 5.01355 5.07808 5.17289 5.22274 5.32227 5.39701 5.43111 5.44719 5.46119 5.52976 5.62247 5.71177 5.76076 5.85485 5.91295 5.96469 6.04678 6.05602 6.20169 6.24055 6.25874 6.36210 6.43427 6.51897 6.58370 6.64223 6.70122 6.81781 6.82333 7.00095 7.08319 7.19562 7.52214 7.58429 7.66494 7.83199 7.91394 8.24629 8.31258 9.22896 9.84359 10.54499 11.38998 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.002516 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.887757 B =11127.444240 C =11542.284228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.282 3.718 3 N -0.529 5.529 4 C 0.256 3.744 5 C -0.050 4.050 6 C 0.525 3.475 7 O -0.543 6.543 8 N -0.604 5.604 9 C 0.115 3.885 10 C -0.129 4.129 11 C -0.091 4.091 12 C 0.166 3.834 13 H 0.030 0.970 14 C -0.127 4.127 15 C -0.151 4.151 16 C 0.175 3.825 17 N -0.593 5.593 18 C -0.221 4.221 19 H 0.072 0.928 20 C -0.004 4.004 21 N -0.917 5.917 22 Si 0.904 3.096 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.119 4.119 27 C 0.103 3.897 28 N -0.306 5.306 29 N -0.484 5.484 30 H 0.439 0.561 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.066 0.934 46 H 0.025 0.975 47 H 0.251 0.749 48 H 0.059 0.941 49 H 0.099 0.901 50 H 0.071 0.929 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.922 -13.991 1.644 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.003 3.997 3 N -0.258 5.258 4 C -0.028 4.028 5 C -0.093 4.093 6 C 0.311 3.689 7 O -0.421 6.421 8 N -0.337 5.337 9 C -0.007 4.007 10 C -0.167 4.167 11 C -0.112 4.112 12 C 0.059 3.941 13 H 0.048 0.952 14 C -0.165 4.165 15 C -0.189 4.189 16 C 0.050 3.950 17 N -0.317 5.317 18 C -0.350 4.350 19 H 0.090 0.910 20 C -0.201 4.201 21 N -0.564 5.564 22 Si 0.735 3.265 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.219 1.219 26 C -0.157 4.157 27 C -0.019 4.019 28 N -0.135 5.135 29 N -0.202 5.202 30 H 0.284 0.716 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.061 0.939 48 H 0.077 0.923 49 H 0.117 0.883 50 H 0.089 0.911 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.480 -14.212 1.951 21.105 hybrid contribution 0.762 -0.818 -0.271 1.150 sum -14.718 -15.030 1.680 21.104 Atomic orbital electron populations 1.20387 0.83649 1.05067 1.04469 1.24371 0.96605 0.82787 0.95917 1.70309 1.01292 1.29518 1.24714 1.23292 0.92639 0.89665 0.97157 1.19966 0.93612 0.98880 0.96806 1.20070 0.79769 0.78676 0.90357 1.90688 1.53034 1.52232 1.46129 1.48120 1.31184 1.46336 1.08106 1.21591 1.00338 0.96337 0.82452 1.21999 1.00936 0.93930 0.99865 1.21550 0.98060 0.98267 0.93295 1.20925 0.90152 0.90217 0.92812 0.95229 1.22651 0.97155 0.97424 0.99265 1.22981 0.99875 0.96470 0.99619 1.21342 0.88773 0.93986 0.90917 1.44486 1.06213 1.46909 1.34057 1.18966 0.83763 1.33545 0.98740 0.90971 1.24848 0.97994 1.01283 0.95982 1.69948 1.34450 1.44652 1.07308 0.86160 0.85128 0.77530 0.77658 1.20566 1.21794 1.21933 1.21879 1.01845 0.92465 0.99492 1.21962 0.96207 0.95417 0.88333 1.77969 0.96648 1.12268 1.26627 1.47923 1.04289 1.09939 1.58064 0.71616 0.88991 0.89934 0.88270 0.85814 0.86467 0.91753 0.89677 0.91283 0.91710 0.91325 0.91524 0.92833 0.92652 0.92684 0.91551 0.95737 0.93860 0.92258 0.88281 0.91057 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.28 2.89 8.24 -155.69 -1.28 1.61 16 3 N -0.53 -7.41 11.19 -8.16 -0.09 -7.50 16 4 C 0.26 3.67 6.63 -156.86 -1.04 2.63 16 5 C -0.05 -0.63 4.67 -29.03 -0.14 -0.77 16 6 C 0.52 7.99 7.69 -10.99 -0.08 7.90 16 7 O -0.54 -10.18 15.45 5.55 0.09 -10.09 16 8 N -0.60 -8.55 2.97 -172.80 -0.51 -9.06 16 9 C 0.12 1.61 6.43 -3.72 -0.02 1.59 16 10 C -0.13 -1.83 5.10 -26.61 -0.14 -1.96 16 11 C -0.09 -1.52 1.91 -90.57 -0.17 -1.69 16 12 C 0.17 3.19 2.95 -66.95 -0.20 2.99 16 13 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 14 C -0.13 -2.16 5.22 -24.90 -0.13 -2.29 16 15 C -0.15 -2.79 7.07 -24.70 -0.17 -2.96 16 16 C 0.17 4.01 5.40 -2.64 -0.01 4.00 16 17 N -0.59 -13.85 2.28 -162.70 -0.37 -14.22 16 18 C -0.22 -5.74 9.84 -15.06 -0.15 -5.89 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C 0.00 -0.12 5.47 -17.43 -0.10 -0.21 16 21 N -0.92 -25.58 10.59 55.49 0.59 -24.99 16 22 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C -0.12 -1.94 4.93 -26.63 -0.13 -2.07 16 27 C 0.10 1.39 6.34 -3.73 -0.02 1.36 16 28 N -0.31 -4.26 12.80 32.42 0.41 -3.85 16 29 N -0.48 -4.84 7.45 32.62 0.24 -4.60 16 30 H 0.44 2.55 8.96 -182.34 -1.63 0.92 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.12 1.36 7.69 -51.93 -0.40 0.96 16 35 H 0.12 1.21 7.94 -51.93 -0.41 0.80 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.25 7.01 -51.93 -0.36 0.89 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.95 7.11 -51.93 -0.37 0.58 16 40 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 41 H 0.07 1.10 5.49 -51.93 -0.29 0.81 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.07 1.73 6.95 -51.93 -0.36 1.37 16 46 H 0.02 0.60 8.06 -51.93 -0.42 0.19 16 47 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 48 H 0.06 0.96 6.13 -51.93 -0.32 0.64 16 49 H 0.10 1.99 7.53 -51.93 -0.39 1.60 16 50 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 51 H 0.08 0.88 5.93 -51.93 -0.31 0.58 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -34.41 396.41 -11.56 -45.97 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -9.45 Total: 1.82 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -3.41 Total: 4.24 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: 0.27 Total: -64.22 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.41 -11.56 -45.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004431980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.791 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds