Wall clock time and date at job start Wed Apr 1 2020 05:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30828 * 125.96730 * 2 1 4 4 C 1.33240 * 109.83027 * 180.02562 * 3 2 1 5 5 C 1.50709 * 125.52224 * 179.97438 * 4 3 2 6 6 C 1.50692 * 109.47233 * 90.00123 * 5 4 3 7 7 O 1.21283 * 120.00129 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00238 * 179.97438 * 6 5 4 9 9 C 1.46918 * 120.63327 * 179.97438 * 8 6 5 10 10 C 1.53188 * 108.78154 * 233.63251 * 9 8 6 11 11 C 1.53040 * 109.31008 * 305.36705 * 10 9 8 12 12 C 1.53004 * 109.45974 * 181.38231 * 11 10 9 13 13 H 1.09002 * 109.87342 * 60.97066 * 12 11 10 14 14 C 1.54321 * 109.88450 * 299.79117 * 12 11 10 15 15 C 1.55156 * 102.94628 * 218.39076 * 14 12 11 16 16 C 1.54690 * 101.67411 * 35.33580 * 15 14 12 17 17 N 1.47023 * 109.88152 * 181.98287 * 12 11 10 18 18 C 1.36929 * 125.65251 * 298.32157 * 17 12 11 19 19 H 1.07999 * 120.00110 * 345.13460 * 18 17 12 20 20 C 1.38816 * 120.00564 * 165.40877 * 18 17 12 21 21 N 1.31624 * 119.99565 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00411 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47084 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47183 * 119.99835 * 22 20 18 25 25 H 1.48507 * 109.46972 * 240.00163 * 22 20 18 26 26 C 1.53044 * 109.54039 * 61.36484 * 11 10 9 27 27 C 1.46924 * 120.62904 * 0.02562 * 8 6 5 28 28 N 1.30705 * 108.94949 * 0.25875 * 4 3 2 29 29 N 1.34433 * 125.95973 * 180.02562 * 2 1 3 30 30 H 0.97001 * 126.81961 * 359.97438 * 29 2 1 31 31 H 1.09000 * 109.46348 * 89.97715 * 1 2 3 32 32 H 1.08997 * 109.47628 * 209.98432 * 1 2 3 33 33 H 1.09006 * 109.46909 * 329.98479 * 1 2 3 34 34 H 1.08997 * 109.46935 * 329.99478 * 5 4 3 35 35 H 1.09004 * 109.46526 * 210.00006 * 5 4 3 36 36 H 1.09007 * 109.59002 * 113.84449 * 9 8 6 37 37 H 1.09005 * 109.70625 * 353.49403 * 9 8 6 38 38 H 1.08998 * 109.50002 * 185.41541 * 10 9 8 39 39 H 1.08999 * 109.49573 * 65.31562 * 10 9 8 40 40 H 1.08997 * 109.46168 * 301.35462 * 11 10 9 41 41 H 1.09004 * 110.71840 * 336.75612 * 14 12 11 42 42 H 1.09002 * 110.72079 * 100.02375 * 14 12 11 43 43 H 1.08996 * 111.00567 * 153.57595 * 15 14 12 44 44 H 1.09002 * 111.00212 * 277.43049 * 15 14 12 45 45 H 1.09007 * 110.38941 * 204.36408 * 16 15 14 46 46 H 1.09004 * 110.23900 * 82.11406 * 16 15 14 47 47 H 0.96996 * 119.99945 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.49475 * 58.58287 * 26 11 10 49 49 H 1.09000 * 109.49803 * 178.68500 * 26 11 10 50 50 H 1.09000 * 109.58841 * 246.15575 * 27 8 6 51 51 H 1.09002 * 109.58891 * 6.43561 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6885 -0.0006 5 6 4.7374 1.6234 -0.0013 6 6 5.1321 1.9353 1.4192 7 8 4.5141 1.4469 2.3415 8 7 6.1718 2.7569 1.6649 9 6 6.5682 3.0708 3.0443 10 6 6.6109 4.5930 3.2109 11 6 7.5264 5.1936 2.1417 12 6 7.5988 6.7107 2.3264 13 1 8.0127 6.9453 3.3072 14 6 6.1897 7.3243 2.1873 15 6 6.4606 8.6476 1.4238 16 6 7.6159 8.2345 0.4817 17 7 8.4385 7.3029 1.2748 18 6 9.7661 7.0377 1.0696 19 1 10.3417 6.5388 1.8353 20 6 10.3736 7.4149 -0.1201 21 7 9.6733 8.0273 -1.0513 22 14 12.1845 7.0524 -0.4003 23 1 12.7407 6.3606 0.7901 24 1 12.3363 6.1830 -1.5945 25 1 12.9163 8.3260 -0.6189 26 6 6.9687 4.8752 0.7526 27 6 6.9297 3.3566 0.5582 28 7 3.6194 -0.6169 -0.0065 29 7 2.2964 -1.0881 -0.0005 30 1 2.0092 -2.0147 -0.0006 31 1 -0.3632 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5136 33 1 -0.3633 0.8899 0.5141 34 1 4.4700 2.5467 -0.5152 35 1 5.5741 1.1506 -0.5155 36 1 7.5550 2.6535 3.2449 37 1 5.8441 2.6472 3.7403 38 1 6.9961 4.8400 4.2002 39 1 5.6058 4.9995 3.0993 40 1 8.5252 4.7680 2.2381 41 1 5.5398 6.6699 1.6063 42 1 5.7584 7.5261 3.1678 43 1 5.5833 8.9578 0.8562 44 1 6.7803 9.4344 2.1070 45 1 8.2020 9.1075 0.1941 46 1 7.2210 7.7337 -0.4022 47 1 10.0978 8.2912 -1.8825 48 1 5.9601 5.2791 0.6642 49 1 7.6084 5.3232 -0.0078 50 1 7.9460 2.9626 0.5556 51 1 6.4436 3.1197 -0.3882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004431980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:45 Heat of formation + Delta-G solvation = 47.814617 kcal Electronic energy + Delta-G solvation = -31479.974090 eV Core-core repulsion = 27415.493458 eV Total energy + Delta-G solvation = -4064.480631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.19475 -41.31116 -39.84089 -37.68963 -34.86875 -34.62570 -33.73423 -33.37047 -32.20267 -31.13236 -30.80250 -29.09289 -28.49875 -26.49786 -25.27656 -24.21952 -23.05620 -22.38887 -21.89728 -21.52901 -20.49114 -19.49182 -18.89272 -18.64593 -18.12256 -17.12801 -16.77806 -16.48933 -16.41737 -16.28404 -15.67933 -15.50411 -15.23950 -14.98866 -14.64198 -14.50933 -14.19933 -13.96879 -13.83702 -13.66230 -13.60901 -13.49902 -13.23052 -13.17528 -12.97355 -12.76960 -12.75981 -12.73633 -12.57901 -12.11307 -11.94437 -11.79578 -11.74550 -11.46503 -11.30128 -11.18352 -11.12569 -11.11502 -10.94646 -10.79947 -10.57176 -10.45080 -9.64983 -8.66266 -7.76937 -5.11009 0.54581 1.48387 1.50533 1.54334 1.58838 1.60548 1.73205 2.15274 2.55525 2.97911 3.41868 3.49079 3.55029 3.71385 3.85586 3.89939 4.00692 4.20385 4.21795 4.28394 4.29784 4.33534 4.37648 4.38446 4.46740 4.59583 4.67587 4.71001 4.74768 4.83195 4.85753 4.93855 4.97576 5.04857 5.10899 5.13991 5.15354 5.22725 5.24073 5.29812 5.32830 5.42722 5.58572 5.60146 5.69993 5.75553 5.78489 5.88327 6.20584 6.34742 6.37173 7.05546 7.08812 7.21658 7.90717 8.59113 9.34416 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.002516 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.887757 B =11127.444240 C =11542.284228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.286 3.714 3 N -0.569 5.569 4 C 0.238 3.762 5 C -0.049 4.049 6 C 0.526 3.474 7 O -0.581 6.581 8 N -0.600 5.600 9 C 0.115 3.885 10 C -0.115 4.115 11 C -0.082 4.082 12 C 0.158 3.842 13 H 0.026 0.974 14 C -0.115 4.115 15 C -0.140 4.140 16 C 0.181 3.819 17 N -0.607 5.607 18 C -0.220 4.220 19 H 0.072 0.928 20 C -0.058 4.058 21 N -0.944 5.944 22 Si 0.962 3.038 23 H -0.270 1.270 24 H -0.293 1.293 25 H -0.299 1.299 26 C -0.109 4.109 27 C 0.110 3.890 28 N -0.338 5.338 29 N -0.474 5.474 30 H 0.455 0.545 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.026 0.974 46 H 0.001 0.999 47 H 0.244 0.756 48 H 0.062 0.938 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.678 -15.428 2.412 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.008 3.992 3 N -0.300 5.300 4 C -0.045 4.045 5 C -0.091 4.091 6 C 0.314 3.686 7 O -0.462 6.462 8 N -0.333 5.333 9 C -0.007 4.007 10 C -0.154 4.154 11 C -0.103 4.103 12 C 0.052 3.948 13 H 0.043 0.957 14 C -0.153 4.153 15 C -0.178 4.178 16 C 0.056 3.944 17 N -0.331 5.331 18 C -0.349 4.349 19 H 0.090 0.910 20 C -0.251 4.251 21 N -0.594 5.594 22 Si 0.792 3.208 23 H -0.194 1.194 24 H -0.221 1.221 25 H -0.227 1.227 26 C -0.147 4.147 27 C -0.012 4.012 28 N -0.168 5.168 29 N -0.195 5.195 30 H 0.304 0.696 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.019 0.981 47 H 0.053 0.947 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.249 -15.683 2.746 23.474 hybrid contribution 1.248 -0.390 -0.463 1.387 sum -16.000 -16.073 2.283 22.794 Atomic orbital electron populations 1.20651 0.79970 1.06411 1.06229 1.25268 0.98340 0.81957 0.93602 1.70298 1.01621 1.31449 1.26603 1.23560 0.93316 0.90040 0.97596 1.20043 0.94141 0.99644 0.95222 1.20471 0.79165 0.77981 0.91032 1.90665 1.54259 1.53719 1.47509 1.48138 1.30908 1.45958 1.08265 1.21596 1.00638 0.96024 0.82447 1.21872 1.00208 0.93835 0.99469 1.21385 0.97869 0.96472 0.94585 1.21139 0.90800 0.91763 0.91087 0.95663 1.22613 0.95806 0.96205 1.00627 1.22863 0.98663 0.97387 0.98897 1.21100 0.89684 0.92183 0.91434 1.44669 1.06047 1.47643 1.34747 1.19202 0.85186 1.32134 0.98417 0.91031 1.25494 1.01392 1.02060 0.96168 1.70136 1.35590 1.46166 1.07464 0.85247 0.81183 0.76807 0.77558 1.19420 1.22055 1.22688 1.21689 1.00816 0.94305 0.97901 1.21924 0.96752 0.93242 0.89316 1.77846 0.98910 1.12387 1.27608 1.47853 1.03184 1.10993 1.57445 0.69601 0.86834 0.86952 0.88493 0.84371 0.84399 0.90928 0.90135 0.89873 0.91484 0.93171 0.90745 0.90026 0.90411 0.92380 0.95559 0.98142 0.94675 0.91978 0.92300 0.90813 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.51 71.24 0.75 0.22 16 2 C 0.29 5.40 8.24 138.23 1.14 6.54 16 3 N -0.57 -15.38 11.19 -179.72 -2.01 -17.39 16 4 C 0.24 6.65 6.63 138.64 0.92 7.57 16 5 C -0.05 -1.16 4.67 29.10 0.14 -1.03 16 6 C 0.53 15.37 7.69 87.65 0.67 16.04 16 7 O -0.58 -21.42 15.45 -3.04 -0.05 -21.47 16 8 N -0.60 -16.06 2.97 -819.00 -2.43 -18.50 16 9 C 0.12 3.04 6.43 86.36 0.56 3.59 16 10 C -0.12 -3.04 5.10 30.67 0.16 -2.88 16 11 C -0.08 -2.68 1.91 -10.76 -0.02 -2.70 16 12 C 0.16 5.92 2.95 45.34 0.13 6.05 16 13 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 14 C -0.11 -3.64 5.22 31.78 0.17 -3.47 16 15 C -0.14 -4.98 7.07 31.91 0.23 -4.75 16 16 C 0.18 8.53 5.40 86.78 0.47 9.00 16 17 N -0.61 -28.78 2.28 -668.66 -1.52 -30.30 16 18 C -0.22 -11.59 9.84 84.04 0.83 -10.76 16 19 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 20 C -0.06 -3.15 5.47 84.86 0.46 -2.68 16 21 N -0.94 -54.68 10.59 21.65 0.23 -54.45 16 22 Si 0.96 44.69 29.55 68.60 2.03 46.72 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 26 C -0.11 -3.48 4.93 30.66 0.15 -3.33 16 27 C 0.11 2.80 6.34 86.35 0.55 3.34 16 28 N -0.34 -9.12 12.80 -51.33 -0.66 -9.78 16 29 N -0.47 -8.79 7.45 -50.71 -0.38 -9.17 16 30 H 0.46 4.47 8.96 -213.10 -1.91 2.56 16 31 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.14 2.82 7.69 -2.39 -0.02 2.80 16 35 H 0.14 2.61 7.94 -2.38 -0.02 2.59 16 36 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.08 2.26 7.01 -2.38 -0.02 2.24 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 1.77 7.11 -2.39 -0.02 1.75 16 40 H 0.05 1.82 8.04 -2.39 -0.02 1.80 16 41 H 0.07 2.27 5.49 -2.38 -0.01 2.25 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.03 1.42 6.95 -2.38 -0.02 1.41 16 46 H 0.00 0.03 8.06 -2.38 -0.02 0.01 16 47 H 0.24 13.88 8.31 -92.71 -0.77 13.11 16 48 H 0.06 1.94 6.13 -2.39 -0.01 1.92 16 49 H 0.06 2.41 7.53 -2.39 -0.02 2.39 16 50 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 51 H 0.10 2.14 5.93 -2.39 -0.01 2.13 16 Total: -1.00 -77.59 396.41 1.54 -76.05 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -0.96 Total: 17.56 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 7.29 Total: 20.74 kcal Atomic # 7 Polarization: -132.82 SS G_CDS: -6.77 Total: -139.60 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -77.59 1.54 -76.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004431980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.867 kcal (2) G-P(sol) polarization free energy of solvation -77.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds