Wall clock time and date at job start Wed Apr 1 2020 05:27:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30828 * 125.96730 * 2 1
4 4 C 1.33240 * 109.83027 * 180.02562 * 3 2 1
5 5 C 1.50709 * 125.52224 * 179.97438 * 4 3 2
6 6 C 1.50692 * 109.47233 * 90.00123 * 5 4 3
7 7 O 1.21283 * 120.00129 * 359.97438 * 6 5 4
8 8 N 1.34776 * 120.00238 * 179.97438 * 6 5 4
9 9 C 1.46918 * 120.63327 * 179.97438 * 8 6 5
10 10 C 1.53188 * 108.78154 * 233.63251 * 9 8 6
11 11 C 1.53040 * 109.31008 * 305.36705 * 10 9 8
12 12 C 1.53004 * 109.45974 * 181.38231 * 11 10 9
13 13 H 1.09002 * 109.87342 * 60.97066 * 12 11 10
14 14 C 1.54321 * 109.88450 * 299.79117 * 12 11 10
15 15 C 1.55156 * 102.94628 * 218.39076 * 14 12 11
16 16 C 1.54690 * 101.67411 * 35.33580 * 15 14 12
17 17 N 1.47023 * 109.88152 * 181.98287 * 12 11 10
18 18 C 1.36929 * 125.65251 * 298.32157 * 17 12 11
19 19 H 1.07999 * 120.00110 * 345.13460 * 18 17 12
20 20 C 1.38816 * 120.00564 * 165.40877 * 18 17 12
21 21 N 1.31624 * 119.99565 * 359.97438 * 20 18 17
22 22 Si 1.86796 * 120.00411 * 180.02562 * 20 18 17
23 23 H 1.48494 * 109.47084 * 359.97438 * 22 20 18
24 24 H 1.48499 * 109.47183 * 119.99835 * 22 20 18
25 25 H 1.48507 * 109.46972 * 240.00163 * 22 20 18
26 26 C 1.53044 * 109.54039 * 61.36484 * 11 10 9
27 27 C 1.46924 * 120.62904 * 0.02562 * 8 6 5
28 28 N 1.30705 * 108.94949 * 0.25875 * 4 3 2
29 29 N 1.34433 * 125.95973 * 180.02562 * 2 1 3
30 30 H 0.97001 * 126.81961 * 359.97438 * 29 2 1
31 31 H 1.09000 * 109.46348 * 89.97715 * 1 2 3
32 32 H 1.08997 * 109.47628 * 209.98432 * 1 2 3
33 33 H 1.09006 * 109.46909 * 329.98479 * 1 2 3
34 34 H 1.08997 * 109.46935 * 329.99478 * 5 4 3
35 35 H 1.09004 * 109.46526 * 210.00006 * 5 4 3
36 36 H 1.09007 * 109.59002 * 113.84449 * 9 8 6
37 37 H 1.09005 * 109.70625 * 353.49403 * 9 8 6
38 38 H 1.08998 * 109.50002 * 185.41541 * 10 9 8
39 39 H 1.08999 * 109.49573 * 65.31562 * 10 9 8
40 40 H 1.08997 * 109.46168 * 301.35462 * 11 10 9
41 41 H 1.09004 * 110.71840 * 336.75612 * 14 12 11
42 42 H 1.09002 * 110.72079 * 100.02375 * 14 12 11
43 43 H 1.08996 * 111.00567 * 153.57595 * 15 14 12
44 44 H 1.09002 * 111.00212 * 277.43049 * 15 14 12
45 45 H 1.09007 * 110.38941 * 204.36408 * 16 15 14
46 46 H 1.09004 * 110.23900 * 82.11406 * 16 15 14
47 47 H 0.96996 * 119.99945 * 179.97438 * 21 20 18
48 48 H 1.08997 * 109.49475 * 58.58287 * 26 11 10
49 49 H 1.09000 * 109.49803 * 178.68500 * 26 11 10
50 50 H 1.09000 * 109.58841 * 246.15575 * 27 8 6
51 51 H 1.09002 * 109.58891 * 6.43561 * 27 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2754 1.0589 0.0000
4 6 3.5553 0.6885 -0.0006
5 6 4.7374 1.6234 -0.0013
6 6 5.1321 1.9353 1.4192
7 8 4.5141 1.4469 2.3415
8 7 6.1718 2.7569 1.6649
9 6 6.5682 3.0708 3.0443
10 6 6.6109 4.5930 3.2109
11 6 7.5264 5.1936 2.1417
12 6 7.5988 6.7107 2.3264
13 1 8.0127 6.9453 3.3072
14 6 6.1897 7.3243 2.1873
15 6 6.4606 8.6476 1.4238
16 6 7.6159 8.2345 0.4817
17 7 8.4385 7.3029 1.2748
18 6 9.7661 7.0377 1.0696
19 1 10.3417 6.5388 1.8353
20 6 10.3736 7.4149 -0.1201
21 7 9.6733 8.0273 -1.0513
22 14 12.1845 7.0524 -0.4003
23 1 12.7407 6.3606 0.7901
24 1 12.3363 6.1830 -1.5945
25 1 12.9163 8.3260 -0.6189
26 6 6.9687 4.8752 0.7526
27 6 6.9297 3.3566 0.5582
28 7 3.6194 -0.6169 -0.0065
29 7 2.2964 -1.0881 -0.0005
30 1 2.0092 -2.0147 -0.0006
31 1 -0.3632 0.0004 -1.0277
32 1 -0.3634 -0.8901 0.5136
33 1 -0.3633 0.8899 0.5141
34 1 4.4700 2.5467 -0.5152
35 1 5.5741 1.1506 -0.5155
36 1 7.5550 2.6535 3.2449
37 1 5.8441 2.6472 3.7403
38 1 6.9961 4.8400 4.2002
39 1 5.6058 4.9995 3.0993
40 1 8.5252 4.7680 2.2381
41 1 5.5398 6.6699 1.6063
42 1 5.7584 7.5261 3.1678
43 1 5.5833 8.9578 0.8562
44 1 6.7803 9.4344 2.1070
45 1 8.2020 9.1075 0.1941
46 1 7.2210 7.7337 -0.4022
47 1 10.0978 8.2912 -1.8825
48 1 5.9601 5.2791 0.6642
49 1 7.6084 5.3232 -0.0078
50 1 7.9460 2.9626 0.5556
51 1 6.4436 3.1197 -0.3882
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001004431980.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:27:45
Heat of formation + Delta-G solvation = 47.814617 kcal
Electronic energy + Delta-G solvation = -31479.974090 eV
Core-core repulsion = 27415.493458 eV
Total energy + Delta-G solvation = -4064.480631 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.30 seconds
Orbital eigenvalues (eV)
-43.19475 -41.31116 -39.84089 -37.68963 -34.86875 -34.62570 -33.73423 -33.37047
-32.20267 -31.13236 -30.80250 -29.09289 -28.49875 -26.49786 -25.27656 -24.21952
-23.05620 -22.38887 -21.89728 -21.52901 -20.49114 -19.49182 -18.89272 -18.64593
-18.12256 -17.12801 -16.77806 -16.48933 -16.41737 -16.28404 -15.67933 -15.50411
-15.23950 -14.98866 -14.64198 -14.50933 -14.19933 -13.96879 -13.83702 -13.66230
-13.60901 -13.49902 -13.23052 -13.17528 -12.97355 -12.76960 -12.75981 -12.73633
-12.57901 -12.11307 -11.94437 -11.79578 -11.74550 -11.46503 -11.30128 -11.18352
-11.12569 -11.11502 -10.94646 -10.79947 -10.57176 -10.45080 -9.64983 -8.66266
-7.76937 -5.11009 0.54581 1.48387 1.50533 1.54334 1.58838 1.60548
1.73205 2.15274 2.55525 2.97911 3.41868 3.49079 3.55029 3.71385
3.85586 3.89939 4.00692 4.20385 4.21795 4.28394 4.29784 4.33534
4.37648 4.38446 4.46740 4.59583 4.67587 4.71001 4.74768 4.83195
4.85753 4.93855 4.97576 5.04857 5.10899 5.13991 5.15354 5.22725
5.24073 5.29812 5.32830 5.42722 5.58572 5.60146 5.69993 5.75553
5.78489 5.88327 6.20584 6.34742 6.37173 7.05546 7.08812 7.21658
7.90717 8.59113 9.34416
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.015323 B = 0.002516 C = 0.002425
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1826.887757 B =11127.444240 C =11542.284228
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.286 3.714
3 N -0.569 5.569
4 C 0.238 3.762
5 C -0.049 4.049
6 C 0.526 3.474
7 O -0.581 6.581
8 N -0.600 5.600
9 C 0.115 3.885
10 C -0.115 4.115
11 C -0.082 4.082
12 C 0.158 3.842
13 H 0.026 0.974
14 C -0.115 4.115
15 C -0.140 4.140
16 C 0.181 3.819
17 N -0.607 5.607
18 C -0.220 4.220
19 H 0.072 0.928
20 C -0.058 4.058
21 N -0.944 5.944
22 Si 0.962 3.038
23 H -0.270 1.270
24 H -0.293 1.293
25 H -0.299 1.299
26 C -0.109 4.109
27 C 0.110 3.890
28 N -0.338 5.338
29 N -0.474 5.474
30 H 0.455 0.545
31 H 0.113 0.887
32 H 0.112 0.888
33 H 0.096 0.904
34 H 0.138 0.862
35 H 0.138 0.862
36 H 0.072 0.928
37 H 0.080 0.920
38 H 0.083 0.917
39 H 0.066 0.934
40 H 0.050 0.950
41 H 0.074 0.926
42 H 0.081 0.919
43 H 0.077 0.923
44 H 0.057 0.943
45 H 0.026 0.974
46 H 0.001 0.999
47 H 0.244 0.756
48 H 0.062 0.938
49 H 0.058 0.942
50 H 0.074 0.926
51 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.678 -15.428 2.412 23.587
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.008 3.992
3 N -0.300 5.300
4 C -0.045 4.045
5 C -0.091 4.091
6 C 0.314 3.686
7 O -0.462 6.462
8 N -0.333 5.333
9 C -0.007 4.007
10 C -0.154 4.154
11 C -0.103 4.103
12 C 0.052 3.948
13 H 0.043 0.957
14 C -0.153 4.153
15 C -0.178 4.178
16 C 0.056 3.944
17 N -0.331 5.331
18 C -0.349 4.349
19 H 0.090 0.910
20 C -0.251 4.251
21 N -0.594 5.594
22 Si 0.792 3.208
23 H -0.194 1.194
24 H -0.221 1.221
25 H -0.227 1.227
26 C -0.147 4.147
27 C -0.012 4.012
28 N -0.168 5.168
29 N -0.195 5.195
30 H 0.304 0.696
31 H 0.132 0.868
32 H 0.130 0.870
33 H 0.115 0.885
34 H 0.156 0.844
35 H 0.156 0.844
36 H 0.091 0.909
37 H 0.099 0.901
38 H 0.101 0.899
39 H 0.085 0.915
40 H 0.068 0.932
41 H 0.093 0.907
42 H 0.100 0.900
43 H 0.096 0.904
44 H 0.076 0.924
45 H 0.044 0.956
46 H 0.019 0.981
47 H 0.053 0.947
48 H 0.080 0.920
49 H 0.077 0.923
50 H 0.092 0.908
51 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -17.249 -15.683 2.746 23.474
hybrid contribution 1.248 -0.390 -0.463 1.387
sum -16.000 -16.073 2.283 22.794
Atomic orbital electron populations
1.20651 0.79970 1.06411 1.06229 1.25268 0.98340 0.81957 0.93602
1.70298 1.01621 1.31449 1.26603 1.23560 0.93316 0.90040 0.97596
1.20043 0.94141 0.99644 0.95222 1.20471 0.79165 0.77981 0.91032
1.90665 1.54259 1.53719 1.47509 1.48138 1.30908 1.45958 1.08265
1.21596 1.00638 0.96024 0.82447 1.21872 1.00208 0.93835 0.99469
1.21385 0.97869 0.96472 0.94585 1.21139 0.90800 0.91763 0.91087
0.95663 1.22613 0.95806 0.96205 1.00627 1.22863 0.98663 0.97387
0.98897 1.21100 0.89684 0.92183 0.91434 1.44669 1.06047 1.47643
1.34747 1.19202 0.85186 1.32134 0.98417 0.91031 1.25494 1.01392
1.02060 0.96168 1.70136 1.35590 1.46166 1.07464 0.85247 0.81183
0.76807 0.77558 1.19420 1.22055 1.22688 1.21689 1.00816 0.94305
0.97901 1.21924 0.96752 0.93242 0.89316 1.77846 0.98910 1.12387
1.27608 1.47853 1.03184 1.10993 1.57445 0.69601 0.86834 0.86952
0.88493 0.84371 0.84399 0.90928 0.90135 0.89873 0.91484 0.93171
0.90745 0.90026 0.90411 0.92380 0.95559 0.98142 0.94675 0.91978
0.92300 0.90813 0.87707
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.53 10.51 71.24 0.75 0.22 16
2 C 0.29 5.40 8.24 138.23 1.14 6.54 16
3 N -0.57 -15.38 11.19 -179.72 -2.01 -17.39 16
4 C 0.24 6.65 6.63 138.64 0.92 7.57 16
5 C -0.05 -1.16 4.67 29.10 0.14 -1.03 16
6 C 0.53 15.37 7.69 87.65 0.67 16.04 16
7 O -0.58 -21.42 15.45 -3.04 -0.05 -21.47 16
8 N -0.60 -16.06 2.97 -819.00 -2.43 -18.50 16
9 C 0.12 3.04 6.43 86.36 0.56 3.59 16
10 C -0.12 -3.04 5.10 30.67 0.16 -2.88 16
11 C -0.08 -2.68 1.91 -10.76 -0.02 -2.70 16
12 C 0.16 5.92 2.95 45.34 0.13 6.05 16
13 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16
14 C -0.11 -3.64 5.22 31.78 0.17 -3.47 16
15 C -0.14 -4.98 7.07 31.91 0.23 -4.75 16
16 C 0.18 8.53 5.40 86.78 0.47 9.00 16
17 N -0.61 -28.78 2.28 -668.66 -1.52 -30.30 16
18 C -0.22 -11.59 9.84 84.04 0.83 -10.76 16
19 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16
20 C -0.06 -3.15 5.47 84.86 0.46 -2.68 16
21 N -0.94 -54.68 10.59 21.65 0.23 -54.45 16
22 Si 0.96 44.69 29.55 68.60 2.03 46.72 16
23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16
24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16
25 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16
26 C -0.11 -3.48 4.93 30.66 0.15 -3.33 16
27 C 0.11 2.80 6.34 86.35 0.55 3.34 16
28 N -0.34 -9.12 12.80 -51.33 -0.66 -9.78 16
29 N -0.47 -8.79 7.45 -50.71 -0.38 -9.17 16
30 H 0.46 4.47 8.96 -213.10 -1.91 2.56 16
31 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16
32 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16
33 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16
34 H 0.14 2.82 7.69 -2.39 -0.02 2.80 16
35 H 0.14 2.61 7.94 -2.38 -0.02 2.59 16
36 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16
37 H 0.08 2.26 7.01 -2.38 -0.02 2.24 16
38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16
39 H 0.07 1.77 7.11 -2.39 -0.02 1.75 16
40 H 0.05 1.82 8.04 -2.39 -0.02 1.80 16
41 H 0.07 2.27 5.49 -2.38 -0.01 2.25 16
42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16
43 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16
44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16
45 H 0.03 1.42 6.95 -2.38 -0.02 1.41 16
46 H 0.00 0.03 8.06 -2.38 -0.02 0.01 16
47 H 0.24 13.88 8.31 -92.71 -0.77 13.11 16
48 H 0.06 1.94 6.13 -2.39 -0.01 1.92 16
49 H 0.06 2.41 7.53 -2.39 -0.02 2.39 16
50 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
51 H 0.10 2.14 5.93 -2.39 -0.01 2.13 16
Total: -1.00 -77.59 396.41 1.54 -76.05
By element:
Atomic # 1 Polarization: 18.52 SS G_CDS: -0.96 Total: 17.56 kcal
Atomic # 6 Polarization: 13.44 SS G_CDS: 7.29 Total: 20.74 kcal
Atomic # 7 Polarization: -132.82 SS G_CDS: -6.77 Total: -139.60 kcal
Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.47 kcal
Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal
Total: -77.59 1.54 -76.05 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001004431980.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.867 kcal
(2) G-P(sol) polarization free energy of solvation -77.588 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.279 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.052 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.815 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds