Wall clock time and date at job start Wed Apr 1 2020 05:16:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.33468 * 125.50165 * 2 1
4 4 C 1.30326 * 109.72880 * 179.97438 * 3 2 1
5 5 N 1.34673 * 108.04289 * 0.07976 * 4 3 2
6 6 N 1.30972 * 125.49549 * 179.97438 * 2 1 3
7 7 C 1.46300 * 125.04742 * 179.85366 * 5 4 3
8 8 C 1.53302 * 108.77351 * 342.97496 * 7 5 4
9 9 H 1.09007 * 109.46410 * 290.14273 * 8 7 5
10 10 C 1.50694 * 109.47174 * 170.14767 * 8 7 5
11 11 O 1.21284 * 120.00328 * 239.99560 * 10 8 7
12 12 N 1.34777 * 120.00249 * 59.99288 * 10 8 7
13 13 C 1.46502 * 119.99576 * 0.02562 * 12 10 8
14 14 C 1.46497 * 120.00138 * 180.02562 * 12 10 8
15 15 C 1.53042 * 109.45780 * 240.06729 * 14 12 10
16 16 C 1.53198 * 109.31255 * 178.61747 * 15 14 12
17 17 N 1.46925 * 108.77591 * 54.63071 * 16 15 14
18 18 C 1.36930 * 120.62655 * 126.37344 * 17 16 15
19 19 H 1.08009 * 119.99940 * 207.69554 * 18 17 16
20 20 C 1.38811 * 120.00344 * 27.69714 * 18 17 16
21 21 N 1.31621 * 120.00165 * 17.35321 * 20 18 17
22 22 Si 1.86800 * 120.00071 * 197.35289 * 20 18 17
23 23 H 1.48501 * 109.47383 * 90.00371 * 22 20 18
24 24 H 1.48503 * 109.46955 * 209.99738 * 22 20 18
25 25 H 1.48500 * 109.47239 * 329.99692 * 22 20 18
26 26 C 1.46924 * 118.74043 * 306.39504 * 17 16 15
27 27 C 1.53041 * 109.46230 * 119.99993 * 14 12 10
28 28 C 1.53163 * 109.48348 * 50.14056 * 8 7 5
29 29 C 1.50932 * 127.90571 * 180.02562 * 4 3 2
30 30 H 1.08996 * 109.47027 * 89.97419 * 1 2 3
31 31 H 1.08998 * 109.47477 * 209.98211 * 1 2 3
32 32 H 1.09004 * 109.46752 * 329.97681 * 1 2 3
33 33 H 1.08996 * 109.58321 * 223.18752 * 7 5 4
34 34 H 1.09004 * 109.58538 * 102.76347 * 7 5 4
35 35 H 1.09001 * 109.47198 * 270.00019 * 13 12 10
36 36 H 1.08996 * 109.47078 * 29.99871 * 13 12 10
37 37 H 1.09004 * 109.46846 * 150.00307 * 13 12 10
38 38 H 1.08994 * 109.44974 * 0.03117 * 14 12 10
39 39 H 1.09005 * 109.49299 * 298.56419 * 15 14 12
40 40 H 1.08999 * 109.49856 * 58.66050 * 15 14 12
41 41 H 1.09001 * 109.58229 * 294.84585 * 16 15 14
42 42 H 1.08993 * 109.58433 * 174.42311 * 16 15 14
43 43 H 0.96991 * 120.00376 * 180.02562 * 21 20 18
44 44 H 1.09004 * 109.58327 * 293.81942 * 26 17 16
45 45 H 1.08996 * 109.70276 * 173.46714 * 26 17 16
46 46 H 1.09005 * 109.49502 * 301.33774 * 27 14 12
47 47 H 1.09005 * 109.49901 * 61.43249 * 27 14 12
48 48 H 1.09008 * 109.50332 * 50.74816 * 28 8 7
49 49 H 1.08997 * 109.50999 * 170.83961 * 28 8 7
50 50 H 1.08995 * 109.71533 * 44.40177 * 29 4 3
51 51 H 1.08994 * 109.75479 * 283.77283 * 29 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2821 1.0866 0.0000
4 6 3.5363 0.7323 0.0005
5 7 3.5896 -0.6134 -0.0009
6 7 2.2675 -1.0663 0.0005
7 6 4.8197 -1.4054 -0.0039
8 6 5.9851 -0.5052 -0.4301
9 1 5.8837 -0.2555 -1.4863
10 6 7.2872 -1.2304 -0.2080
11 8 8.1199 -0.7660 0.5415
12 7 7.5266 -2.3952 -0.8424
13 6 6.5210 -2.9560 -1.7482
14 6 8.7923 -3.1005 -0.6261
15 6 9.5327 -3.2393 -1.9583
16 6 10.8711 -3.9465 -1.7228
17 7 10.6183 -5.2211 -1.0371
18 6 11.1018 -6.3959 -1.5481
19 1 10.5879 -7.3244 -1.3468
20 6 12.2523 -6.3937 -2.3247
21 7 13.0636 -5.3577 -2.2962
22 14 12.6492 -7.8612 -3.4103
23 1 12.0425 -7.6635 -4.7512
24 1 14.1221 -7.9911 -3.5479
25 1 12.0988 -9.0955 -2.7949
26 6 9.8365 -5.2113 0.2068
27 6 8.5098 -4.4901 -0.0503
28 6 5.9683 0.7805 0.4022
29 6 4.7523 1.6263 0.0013
30 1 -0.3633 0.0005 -1.0276
31 1 -0.3634 -0.8901 0.5135
32 1 -0.3633 0.8898 0.5142
33 1 4.7202 -2.2320 -0.7073
34 1 5.0059 -1.7950 0.9970
35 1 5.8513 -3.6088 -1.1883
36 1 5.9466 -2.1468 -2.1991
37 1 7.0169 -3.5298 -2.5311
38 1 9.4075 -2.5355 0.0741
39 1 8.9285 -3.8254 -2.6508
40 1 9.7128 -2.2502 -2.3792
41 1 11.5117 -3.3190 -1.1031
42 1 11.3573 -4.1363 -2.6796
43 1 13.8673 -5.3560 -2.8391
44 1 10.3929 -4.6870 0.9838
45 1 9.6402 -6.2349 0.5256
46 1 7.9619 -4.3910 0.8868
47 1 7.9153 -5.0644 -0.7609
48 1 5.9039 0.5280 1.4607
49 1 6.8820 1.3454 0.2177
50 1 4.6140 2.4346 0.7193
51 1 4.9050 2.0414 -0.9949
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001005771414.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:16:44
Heat of formation + Delta-G solvation = 75.166705 kcal
Electronic energy + Delta-G solvation = -31400.147938 eV
Core-core repulsion = 27336.853382 eV
Total energy + Delta-G solvation = -4063.294556 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.38 seconds
Orbital eigenvalues (eV)
-42.67191 -40.51445 -37.91182 -36.74932 -35.37572 -33.55842 -32.79906 -32.10476
-30.53644 -29.97490 -29.47671 -28.61846 -27.19081 -25.32247 -24.60840 -23.63398
-22.28765 -21.97008 -21.02710 -20.12804 -19.26278 -18.96193 -17.41376 -17.18033
-16.82107 -16.36892 -15.99220 -15.66784 -14.97460 -14.78773 -14.66972 -14.57489
-14.22469 -13.81971 -13.67749 -13.56886 -13.41626 -13.12653 -12.96514 -12.85600
-12.77736 -12.68620 -12.47366 -12.29864 -12.14220 -12.00773 -11.63549 -11.53898
-11.25993 -11.18231 -10.88982 -10.79434 -10.44033 -10.31187 -10.27085 -10.16589
-9.97923 -9.93655 -9.78912 -9.60400 -9.54925 -8.65138 -8.43923 -6.76162
-5.84854 -3.27469 1.31554 1.85026 2.45828 2.58549 2.86743 3.33634
3.40871 3.42056 3.58035 3.82157 4.01704 4.10832 4.37388 4.44246
4.48961 4.59156 4.78676 4.79625 4.93453 4.95269 5.09036 5.18545
5.22994 5.23486 5.28678 5.34820 5.41592 5.44987 5.49897 5.51175
5.53466 5.59291 5.70884 5.76341 5.98163 6.05840 6.09358 6.17780
6.22488 6.38060 6.44543 6.46958 6.53117 6.68861 6.75048 6.87548
7.25254 7.34082 7.57970 7.73991 7.85179 8.02755 8.38334 9.14629
9.77727 10.34116 11.23865
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.024369 B = 0.002173 C = 0.002081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1148.738926 B =12882.455086 C =13451.108679
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 C 0.215 3.785
3 N -0.539 5.539
4 C 0.279 3.721
5 N -0.374 5.374
6 N -0.314 5.314
7 C 0.130 3.870
8 C -0.124 4.124
9 H 0.110 0.890
10 C 0.521 3.479
11 O -0.529 6.529
12 N -0.604 5.604
13 C 0.067 3.933
14 C 0.144 3.856
15 C -0.146 4.146
16 C 0.173 3.827
17 N -0.592 5.592
18 C -0.254 4.254
19 H 0.066 0.934
20 C 0.002 3.998
21 N -0.902 5.902
22 Si 0.903 3.097
23 H -0.288 1.288
24 H -0.291 1.291
25 H -0.279 1.279
26 C 0.147 3.853
27 C -0.138 4.138
28 C -0.108 4.108
29 C -0.042 4.042
30 H 0.082 0.918
31 H 0.081 0.919
32 H 0.085 0.915
33 H 0.110 0.890
34 H 0.094 0.906
35 H 0.059 0.941
36 H 0.066 0.934
37 H 0.084 0.916
38 H 0.097 0.903
39 H 0.058 0.942
40 H 0.051 0.949
41 H 0.021 0.979
42 H 0.092 0.908
43 H 0.255 0.745
44 H 0.020 0.980
45 H 0.057 0.943
46 H 0.052 0.948
47 H 0.061 0.939
48 H 0.080 0.920
49 H 0.101 0.899
50 H 0.108 0.892
51 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.612 12.548 2.421 24.252
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.066 4.066
3 N -0.268 5.268
4 C 0.003 3.997
5 N -0.165 5.165
6 N -0.143 5.143
7 C 0.008 3.992
8 C -0.147 4.147
9 H 0.128 0.872
10 C 0.307 3.693
11 O -0.405 6.405
12 N -0.335 5.335
13 C -0.076 4.076
14 C 0.043 3.957
15 C -0.186 4.186
16 C 0.047 3.953
17 N -0.315 5.315
18 C -0.383 4.383
19 H 0.084 0.916
20 C -0.197 4.197
21 N -0.546 5.546
22 Si 0.733 3.267
23 H -0.215 1.215
24 H -0.217 1.217
25 H -0.204 1.204
26 C 0.020 3.980
27 C -0.178 4.178
28 C -0.146 4.146
29 C -0.081 4.081
30 H 0.101 0.899
31 H 0.100 0.900
32 H 0.104 0.896
33 H 0.128 0.872
34 H 0.112 0.888
35 H 0.078 0.922
36 H 0.085 0.915
37 H 0.103 0.897
38 H 0.115 0.885
39 H 0.077 0.923
40 H 0.070 0.930
41 H 0.039 0.961
42 H 0.110 0.890
43 H 0.065 0.935
44 H 0.038 0.962
45 H 0.076 0.924
46 H 0.070 0.930
47 H 0.080 0.920
48 H 0.099 0.901
49 H 0.120 0.880
50 H 0.127 0.873
51 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -20.321 12.291 2.743 23.907
hybrid contribution 0.412 -0.877 -0.749 1.224
sum -19.909 11.415 1.994 23.036
Atomic orbital electron populations
1.20075 0.83845 1.03985 1.03683 1.24437 0.98265 0.85531 0.98409
1.70185 0.99840 1.30838 1.25914 1.24362 0.95047 0.84017 0.96266
1.50149 1.05582 1.05855 1.54908 1.77954 0.86439 1.22508 1.27377
1.22048 0.78394 0.93932 1.04835 1.21734 0.92668 0.96764 1.03486
0.87161 1.19961 0.87697 0.81095 0.80549 1.90732 1.47128 1.65900
1.36737 1.48206 1.19011 1.21934 1.44396 1.21985 0.91958 0.99286
0.94405 1.21270 0.82765 0.92707 0.98959 1.22577 1.00525 1.00058
0.95430 1.20769 0.90125 0.85279 0.99141 1.44091 1.61285 1.04019
1.22070 1.19185 1.04659 0.86643 1.27840 0.91583 1.25056 0.95140
0.97571 1.01886 1.70027 1.12299 1.30813 1.41453 0.86282 0.77192
0.82330 0.80909 1.21456 1.21746 1.20423 1.20859 0.89769 0.97894
0.89451 1.22370 1.00392 0.95374 0.99638 1.21599 0.98633 0.93962
1.00451 1.20467 0.86626 0.96028 1.05001 0.89892 0.90037 0.89610
0.87169 0.88815 0.92233 0.91494 0.89716 0.88482 0.92338 0.92999
0.96091 0.89038 0.93543 0.96186 0.92400 0.92962 0.92030 0.90095
0.88027 0.87324 0.87968
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.41 10.51 36.01 0.38 -0.03 16
2 C 0.22 2.48 8.15 -156.44 -1.27 1.20 16
3 N -0.54 -6.53 11.18 -8.03 -0.09 -6.62 16
4 C 0.28 2.96 7.72 -155.78 -1.20 1.76 16
5 N -0.37 -4.14 4.04 -58.29 -0.24 -4.37 16
6 N -0.31 -3.94 12.74 32.50 0.41 -3.53 16
7 C 0.13 1.18 6.09 -3.99 -0.02 1.16 16
8 C -0.12 -1.09 1.74 -91.53 -0.16 -1.25 16
9 H 0.11 0.81 7.38 -51.93 -0.38 0.43 16
10 C 0.52 6.48 7.06 -10.99 -0.08 6.40 16
11 O -0.53 -8.53 15.16 5.55 0.08 -8.44 16
12 N -0.60 -7.59 2.76 -173.89 -0.48 -8.07 16
13 C 0.07 0.63 7.87 59.85 0.47 1.10 16
14 C 0.14 2.33 2.48 -67.89 -0.17 2.16 16
15 C -0.15 -2.60 5.31 -26.61 -0.14 -2.74 16
16 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16
17 N -0.59 -14.22 2.99 -172.32 -0.52 -14.74 16
18 C -0.25 -6.73 9.59 -15.06 -0.14 -6.87 16
19 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16
20 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16
21 N -0.90 -25.60 11.19 55.49 0.62 -24.98 16
22 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16
23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16
24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
26 C 0.15 2.97 6.51 -3.71 -0.02 2.94 16
27 C -0.14 -2.24 5.34 -26.61 -0.14 -2.38 16
28 C -0.11 -0.87 4.68 -26.41 -0.12 -0.99 16
29 C -0.04 -0.30 6.33 -27.53 -0.17 -0.47 16
30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.11 0.90 4.90 -51.93 -0.25 0.65 16
34 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16
35 H 0.06 0.50 7.18 -51.93 -0.37 0.13 16
36 H 0.07 0.49 5.90 -51.93 -0.31 0.18 16
37 H 0.08 0.87 6.46 -51.93 -0.34 0.54 16
38 H 0.10 1.80 6.90 -51.93 -0.36 1.44 16
39 H 0.06 1.02 6.73 -51.93 -0.35 0.67 16
40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16
41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
42 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16
43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16
44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
45 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16
46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
47 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16
48 H 0.08 0.72 8.12 -51.92 -0.42 0.29 16
49 H 0.10 0.82 7.80 -51.93 -0.41 0.41 16
50 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16
51 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16
LS Contribution 391.22 15.07 5.90 5.90
Total: -1.00 -33.27 391.22 -10.34 -43.60
By element:
Atomic # 1 Polarization: 7.27 SS G_CDS: -8.09 Total: -0.82 kcal
Atomic # 6 Polarization: 8.84 SS G_CDS: -2.91 Total: 5.93 kcal
Atomic # 7 Polarization: -62.02 SS G_CDS: -0.29 Total: -62.31 kcal
Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.44 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -33.27 -10.34 -43.60 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001005771414.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.771 kcal
(2) G-P(sol) polarization free energy of solvation -33.268 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.503 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal
(6) G-S(sol) free energy of system = (1) + (5) 75.167 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.38 seconds