Wall clock time and date at job start Wed Apr 1 2020 05:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33468 * 125.50165 * 2 1 4 4 C 1.30326 * 109.72880 * 179.97438 * 3 2 1 5 5 N 1.34673 * 108.04289 * 0.07976 * 4 3 2 6 6 N 1.30972 * 125.49549 * 179.97438 * 2 1 3 7 7 C 1.46300 * 125.04742 * 179.85366 * 5 4 3 8 8 C 1.53302 * 108.77351 * 342.97496 * 7 5 4 9 9 H 1.09007 * 109.46410 * 290.14273 * 8 7 5 10 10 C 1.50694 * 109.47174 * 170.14767 * 8 7 5 11 11 O 1.21284 * 120.00328 * 239.99560 * 10 8 7 12 12 N 1.34777 * 120.00249 * 59.99288 * 10 8 7 13 13 C 1.46502 * 119.99576 * 0.02562 * 12 10 8 14 14 C 1.46497 * 120.00138 * 180.02562 * 12 10 8 15 15 C 1.53042 * 109.45780 * 240.06729 * 14 12 10 16 16 C 1.53198 * 109.31255 * 178.61747 * 15 14 12 17 17 N 1.46925 * 108.77591 * 54.63071 * 16 15 14 18 18 C 1.36930 * 120.62655 * 126.37344 * 17 16 15 19 19 H 1.08009 * 119.99940 * 207.69554 * 18 17 16 20 20 C 1.38811 * 120.00344 * 27.69714 * 18 17 16 21 21 N 1.31621 * 120.00165 * 17.35321 * 20 18 17 22 22 Si 1.86800 * 120.00071 * 197.35289 * 20 18 17 23 23 H 1.48501 * 109.47383 * 90.00371 * 22 20 18 24 24 H 1.48503 * 109.46955 * 209.99738 * 22 20 18 25 25 H 1.48500 * 109.47239 * 329.99692 * 22 20 18 26 26 C 1.46924 * 118.74043 * 306.39504 * 17 16 15 27 27 C 1.53041 * 109.46230 * 119.99993 * 14 12 10 28 28 C 1.53163 * 109.48348 * 50.14056 * 8 7 5 29 29 C 1.50932 * 127.90571 * 180.02562 * 4 3 2 30 30 H 1.08996 * 109.47027 * 89.97419 * 1 2 3 31 31 H 1.08998 * 109.47477 * 209.98211 * 1 2 3 32 32 H 1.09004 * 109.46752 * 329.97681 * 1 2 3 33 33 H 1.08996 * 109.58321 * 223.18752 * 7 5 4 34 34 H 1.09004 * 109.58538 * 102.76347 * 7 5 4 35 35 H 1.09001 * 109.47198 * 270.00019 * 13 12 10 36 36 H 1.08996 * 109.47078 * 29.99871 * 13 12 10 37 37 H 1.09004 * 109.46846 * 150.00307 * 13 12 10 38 38 H 1.08994 * 109.44974 * 0.03117 * 14 12 10 39 39 H 1.09005 * 109.49299 * 298.56419 * 15 14 12 40 40 H 1.08999 * 109.49856 * 58.66050 * 15 14 12 41 41 H 1.09001 * 109.58229 * 294.84585 * 16 15 14 42 42 H 1.08993 * 109.58433 * 174.42311 * 16 15 14 43 43 H 0.96991 * 120.00376 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.58327 * 293.81942 * 26 17 16 45 45 H 1.08996 * 109.70276 * 173.46714 * 26 17 16 46 46 H 1.09005 * 109.49502 * 301.33774 * 27 14 12 47 47 H 1.09005 * 109.49901 * 61.43249 * 27 14 12 48 48 H 1.09008 * 109.50332 * 50.74816 * 28 8 7 49 49 H 1.08997 * 109.50999 * 170.83961 * 28 8 7 50 50 H 1.08995 * 109.71533 * 44.40177 * 29 4 3 51 51 H 1.08994 * 109.75479 * 283.77283 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0866 0.0000 4 6 3.5363 0.7323 0.0005 5 7 3.5896 -0.6134 -0.0009 6 7 2.2675 -1.0663 0.0005 7 6 4.8197 -1.4054 -0.0039 8 6 5.9851 -0.5052 -0.4301 9 1 5.8837 -0.2555 -1.4863 10 6 7.2872 -1.2304 -0.2080 11 8 8.1199 -0.7660 0.5415 12 7 7.5266 -2.3952 -0.8424 13 6 6.5210 -2.9560 -1.7482 14 6 8.7923 -3.1005 -0.6261 15 6 9.5327 -3.2393 -1.9583 16 6 10.8711 -3.9465 -1.7228 17 7 10.6183 -5.2211 -1.0371 18 6 11.1018 -6.3959 -1.5481 19 1 10.5879 -7.3244 -1.3468 20 6 12.2523 -6.3937 -2.3247 21 7 13.0636 -5.3577 -2.2962 22 14 12.6492 -7.8612 -3.4103 23 1 12.0425 -7.6635 -4.7512 24 1 14.1221 -7.9911 -3.5479 25 1 12.0988 -9.0955 -2.7949 26 6 9.8365 -5.2113 0.2068 27 6 8.5098 -4.4901 -0.0503 28 6 5.9683 0.7805 0.4022 29 6 4.7523 1.6263 0.0013 30 1 -0.3633 0.0005 -1.0276 31 1 -0.3634 -0.8901 0.5135 32 1 -0.3633 0.8898 0.5142 33 1 4.7202 -2.2320 -0.7073 34 1 5.0059 -1.7950 0.9970 35 1 5.8513 -3.6088 -1.1883 36 1 5.9466 -2.1468 -2.1991 37 1 7.0169 -3.5298 -2.5311 38 1 9.4075 -2.5355 0.0741 39 1 8.9285 -3.8254 -2.6508 40 1 9.7128 -2.2502 -2.3792 41 1 11.5117 -3.3190 -1.1031 42 1 11.3573 -4.1363 -2.6796 43 1 13.8673 -5.3560 -2.8391 44 1 10.3929 -4.6870 0.9838 45 1 9.6402 -6.2349 0.5256 46 1 7.9619 -4.3910 0.8868 47 1 7.9153 -5.0644 -0.7609 48 1 5.9039 0.5280 1.4607 49 1 6.8820 1.3454 0.2177 50 1 4.6140 2.4346 0.7193 51 1 4.9050 2.0414 -0.9949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005771414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:44 Heat of formation + Delta-G solvation = 75.166705 kcal Electronic energy + Delta-G solvation = -31400.147938 eV Core-core repulsion = 27336.853382 eV Total energy + Delta-G solvation = -4063.294556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.67191 -40.51445 -37.91182 -36.74932 -35.37572 -33.55842 -32.79906 -32.10476 -30.53644 -29.97490 -29.47671 -28.61846 -27.19081 -25.32247 -24.60840 -23.63398 -22.28765 -21.97008 -21.02710 -20.12804 -19.26278 -18.96193 -17.41376 -17.18033 -16.82107 -16.36892 -15.99220 -15.66784 -14.97460 -14.78773 -14.66972 -14.57489 -14.22469 -13.81971 -13.67749 -13.56886 -13.41626 -13.12653 -12.96514 -12.85600 -12.77736 -12.68620 -12.47366 -12.29864 -12.14220 -12.00773 -11.63549 -11.53898 -11.25993 -11.18231 -10.88982 -10.79434 -10.44033 -10.31187 -10.27085 -10.16589 -9.97923 -9.93655 -9.78912 -9.60400 -9.54925 -8.65138 -8.43923 -6.76162 -5.84854 -3.27469 1.31554 1.85026 2.45828 2.58549 2.86743 3.33634 3.40871 3.42056 3.58035 3.82157 4.01704 4.10832 4.37388 4.44246 4.48961 4.59156 4.78676 4.79625 4.93453 4.95269 5.09036 5.18545 5.22994 5.23486 5.28678 5.34820 5.41592 5.44987 5.49897 5.51175 5.53466 5.59291 5.70884 5.76341 5.98163 6.05840 6.09358 6.17780 6.22488 6.38060 6.44543 6.46958 6.53117 6.68861 6.75048 6.87548 7.25254 7.34082 7.57970 7.73991 7.85179 8.02755 8.38334 9.14629 9.77727 10.34116 11.23865 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024369 B = 0.002173 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.738926 B =12882.455086 C =13451.108679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.215 3.785 3 N -0.539 5.539 4 C 0.279 3.721 5 N -0.374 5.374 6 N -0.314 5.314 7 C 0.130 3.870 8 C -0.124 4.124 9 H 0.110 0.890 10 C 0.521 3.479 11 O -0.529 6.529 12 N -0.604 5.604 13 C 0.067 3.933 14 C 0.144 3.856 15 C -0.146 4.146 16 C 0.173 3.827 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.147 3.853 27 C -0.138 4.138 28 C -0.108 4.108 29 C -0.042 4.042 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.021 0.979 42 H 0.092 0.908 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.061 0.939 48 H 0.080 0.920 49 H 0.101 0.899 50 H 0.108 0.892 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.612 12.548 2.421 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.066 4.066 3 N -0.268 5.268 4 C 0.003 3.997 5 N -0.165 5.165 6 N -0.143 5.143 7 C 0.008 3.992 8 C -0.147 4.147 9 H 0.128 0.872 10 C 0.307 3.693 11 O -0.405 6.405 12 N -0.335 5.335 13 C -0.076 4.076 14 C 0.043 3.957 15 C -0.186 4.186 16 C 0.047 3.953 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.020 3.980 27 C -0.178 4.178 28 C -0.146 4.146 29 C -0.081 4.081 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.110 0.890 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.120 0.880 50 H 0.127 0.873 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.321 12.291 2.743 23.907 hybrid contribution 0.412 -0.877 -0.749 1.224 sum -19.909 11.415 1.994 23.036 Atomic orbital electron populations 1.20075 0.83845 1.03985 1.03683 1.24437 0.98265 0.85531 0.98409 1.70185 0.99840 1.30838 1.25914 1.24362 0.95047 0.84017 0.96266 1.50149 1.05582 1.05855 1.54908 1.77954 0.86439 1.22508 1.27377 1.22048 0.78394 0.93932 1.04835 1.21734 0.92668 0.96764 1.03486 0.87161 1.19961 0.87697 0.81095 0.80549 1.90732 1.47128 1.65900 1.36737 1.48206 1.19011 1.21934 1.44396 1.21985 0.91958 0.99286 0.94405 1.21270 0.82765 0.92707 0.98959 1.22577 1.00525 1.00058 0.95430 1.20769 0.90125 0.85279 0.99141 1.44091 1.61285 1.04019 1.22070 1.19185 1.04659 0.86643 1.27840 0.91583 1.25056 0.95140 0.97571 1.01886 1.70027 1.12299 1.30813 1.41453 0.86282 0.77192 0.82330 0.80909 1.21456 1.21746 1.20423 1.20859 0.89769 0.97894 0.89451 1.22370 1.00392 0.95374 0.99638 1.21599 0.98633 0.93962 1.00451 1.20467 0.86626 0.96028 1.05001 0.89892 0.90037 0.89610 0.87169 0.88815 0.92233 0.91494 0.89716 0.88482 0.92338 0.92999 0.96091 0.89038 0.93543 0.96186 0.92400 0.92962 0.92030 0.90095 0.88027 0.87324 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.22 2.48 8.15 -156.44 -1.27 1.20 16 3 N -0.54 -6.53 11.18 -8.03 -0.09 -6.62 16 4 C 0.28 2.96 7.72 -155.78 -1.20 1.76 16 5 N -0.37 -4.14 4.04 -58.29 -0.24 -4.37 16 6 N -0.31 -3.94 12.74 32.50 0.41 -3.53 16 7 C 0.13 1.18 6.09 -3.99 -0.02 1.16 16 8 C -0.12 -1.09 1.74 -91.53 -0.16 -1.25 16 9 H 0.11 0.81 7.38 -51.93 -0.38 0.43 16 10 C 0.52 6.48 7.06 -10.99 -0.08 6.40 16 11 O -0.53 -8.53 15.16 5.55 0.08 -8.44 16 12 N -0.60 -7.59 2.76 -173.89 -0.48 -8.07 16 13 C 0.07 0.63 7.87 59.85 0.47 1.10 16 14 C 0.14 2.33 2.48 -67.89 -0.17 2.16 16 15 C -0.15 -2.60 5.31 -26.61 -0.14 -2.74 16 16 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 17 N -0.59 -14.22 2.99 -172.32 -0.52 -14.74 16 18 C -0.25 -6.73 9.59 -15.06 -0.14 -6.87 16 19 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 20 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 21 N -0.90 -25.60 11.19 55.49 0.62 -24.98 16 22 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.15 2.97 6.51 -3.71 -0.02 2.94 16 27 C -0.14 -2.24 5.34 -26.61 -0.14 -2.38 16 28 C -0.11 -0.87 4.68 -26.41 -0.12 -0.99 16 29 C -0.04 -0.30 6.33 -27.53 -0.17 -0.47 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.11 0.90 4.90 -51.93 -0.25 0.65 16 34 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.06 0.50 7.18 -51.93 -0.37 0.13 16 36 H 0.07 0.49 5.90 -51.93 -0.31 0.18 16 37 H 0.08 0.87 6.46 -51.93 -0.34 0.54 16 38 H 0.10 1.80 6.90 -51.93 -0.36 1.44 16 39 H 0.06 1.02 6.73 -51.93 -0.35 0.67 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16 48 H 0.08 0.72 8.12 -51.92 -0.42 0.29 16 49 H 0.10 0.82 7.80 -51.93 -0.41 0.41 16 50 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -33.27 391.22 -10.34 -43.60 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.09 Total: -0.82 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -2.91 Total: 5.93 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.29 Total: -62.31 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.27 -10.34 -43.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005771414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.771 kcal (2) G-P(sol) polarization free energy of solvation -33.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds