Wall clock time and date at job start Wed Apr 1 2020 05:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33468 * 125.50165 * 2 1 4 4 C 1.30326 * 109.72880 * 179.97438 * 3 2 1 5 5 N 1.34673 * 108.04289 * 0.07976 * 4 3 2 6 6 N 1.30972 * 125.49549 * 179.97438 * 2 1 3 7 7 C 1.46300 * 125.04742 * 179.85366 * 5 4 3 8 8 C 1.53302 * 108.77351 * 342.97496 * 7 5 4 9 9 H 1.09007 * 109.46410 * 290.14273 * 8 7 5 10 10 C 1.50694 * 109.47174 * 170.14767 * 8 7 5 11 11 O 1.21284 * 120.00328 * 239.99560 * 10 8 7 12 12 N 1.34777 * 120.00249 * 59.99288 * 10 8 7 13 13 C 1.46502 * 119.99576 * 0.02562 * 12 10 8 14 14 C 1.46497 * 120.00138 * 180.02562 * 12 10 8 15 15 C 1.53042 * 109.45780 * 240.06729 * 14 12 10 16 16 C 1.53198 * 109.31255 * 178.61747 * 15 14 12 17 17 N 1.46925 * 108.77591 * 54.63071 * 16 15 14 18 18 C 1.36930 * 120.62655 * 126.37344 * 17 16 15 19 19 H 1.08009 * 119.99940 * 207.69554 * 18 17 16 20 20 C 1.38811 * 120.00344 * 27.69714 * 18 17 16 21 21 N 1.31621 * 120.00165 * 17.35321 * 20 18 17 22 22 Si 1.86800 * 120.00071 * 197.35289 * 20 18 17 23 23 H 1.48501 * 109.47383 * 90.00371 * 22 20 18 24 24 H 1.48503 * 109.46955 * 209.99738 * 22 20 18 25 25 H 1.48500 * 109.47239 * 329.99692 * 22 20 18 26 26 C 1.46924 * 118.74043 * 306.39504 * 17 16 15 27 27 C 1.53041 * 109.46230 * 119.99993 * 14 12 10 28 28 C 1.53163 * 109.48348 * 50.14056 * 8 7 5 29 29 C 1.50932 * 127.90571 * 180.02562 * 4 3 2 30 30 H 1.08996 * 109.47027 * 89.97419 * 1 2 3 31 31 H 1.08998 * 109.47477 * 209.98211 * 1 2 3 32 32 H 1.09004 * 109.46752 * 329.97681 * 1 2 3 33 33 H 1.08996 * 109.58321 * 223.18752 * 7 5 4 34 34 H 1.09004 * 109.58538 * 102.76347 * 7 5 4 35 35 H 1.09001 * 109.47198 * 270.00019 * 13 12 10 36 36 H 1.08996 * 109.47078 * 29.99871 * 13 12 10 37 37 H 1.09004 * 109.46846 * 150.00307 * 13 12 10 38 38 H 1.08994 * 109.44974 * 0.03117 * 14 12 10 39 39 H 1.09005 * 109.49299 * 298.56419 * 15 14 12 40 40 H 1.08999 * 109.49856 * 58.66050 * 15 14 12 41 41 H 1.09001 * 109.58229 * 294.84585 * 16 15 14 42 42 H 1.08993 * 109.58433 * 174.42311 * 16 15 14 43 43 H 0.96991 * 120.00376 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.58327 * 293.81942 * 26 17 16 45 45 H 1.08996 * 109.70276 * 173.46714 * 26 17 16 46 46 H 1.09005 * 109.49502 * 301.33774 * 27 14 12 47 47 H 1.09005 * 109.49901 * 61.43249 * 27 14 12 48 48 H 1.09008 * 109.50332 * 50.74816 * 28 8 7 49 49 H 1.08997 * 109.50999 * 170.83961 * 28 8 7 50 50 H 1.08995 * 109.71533 * 44.40177 * 29 4 3 51 51 H 1.08994 * 109.75479 * 283.77283 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0866 0.0000 4 6 3.5363 0.7323 0.0005 5 7 3.5896 -0.6134 -0.0009 6 7 2.2675 -1.0663 0.0005 7 6 4.8197 -1.4054 -0.0039 8 6 5.9851 -0.5052 -0.4301 9 1 5.8837 -0.2555 -1.4863 10 6 7.2872 -1.2304 -0.2080 11 8 8.1199 -0.7660 0.5415 12 7 7.5266 -2.3952 -0.8424 13 6 6.5210 -2.9560 -1.7482 14 6 8.7923 -3.1005 -0.6261 15 6 9.5327 -3.2393 -1.9583 16 6 10.8711 -3.9465 -1.7228 17 7 10.6183 -5.2211 -1.0371 18 6 11.1018 -6.3959 -1.5481 19 1 10.5879 -7.3244 -1.3468 20 6 12.2523 -6.3937 -2.3247 21 7 13.0636 -5.3577 -2.2962 22 14 12.6492 -7.8612 -3.4103 23 1 12.0425 -7.6635 -4.7512 24 1 14.1221 -7.9911 -3.5479 25 1 12.0988 -9.0955 -2.7949 26 6 9.8365 -5.2113 0.2068 27 6 8.5098 -4.4901 -0.0503 28 6 5.9683 0.7805 0.4022 29 6 4.7523 1.6263 0.0013 30 1 -0.3633 0.0005 -1.0276 31 1 -0.3634 -0.8901 0.5135 32 1 -0.3633 0.8898 0.5142 33 1 4.7202 -2.2320 -0.7073 34 1 5.0059 -1.7950 0.9970 35 1 5.8513 -3.6088 -1.1883 36 1 5.9466 -2.1468 -2.1991 37 1 7.0169 -3.5298 -2.5311 38 1 9.4075 -2.5355 0.0741 39 1 8.9285 -3.8254 -2.6508 40 1 9.7128 -2.2502 -2.3792 41 1 11.5117 -3.3190 -1.1031 42 1 11.3573 -4.1363 -2.6796 43 1 13.8673 -5.3560 -2.8391 44 1 10.3929 -4.6870 0.9838 45 1 9.6402 -6.2349 0.5256 46 1 7.9619 -4.3910 0.8868 47 1 7.9153 -5.0644 -0.7609 48 1 5.9039 0.5280 1.4607 49 1 6.8820 1.3454 0.2177 50 1 4.6140 2.4346 0.7193 51 1 4.9050 2.0414 -0.9949 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005771414.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:43 Heat of formation + Delta-G solvation = 55.522427 kcal Electronic energy + Delta-G solvation = -31400.999778 eV Core-core repulsion = 27336.853382 eV Total energy + Delta-G solvation = -4064.146396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.44520 -41.54087 -39.28002 -37.66749 -36.70677 -34.48484 -34.17168 -33.04646 -31.98179 -31.46208 -30.54274 -29.34908 -28.11165 -26.98246 -25.36062 -24.69768 -23.89273 -23.32460 -21.84382 -21.10297 -20.54810 -19.98102 -18.79039 -18.24316 -17.98596 -17.28712 -17.05320 -16.77110 -16.45899 -15.74730 -15.69545 -15.42403 -15.32701 -15.24126 -14.96124 -14.80135 -14.37595 -14.20572 -14.17121 -14.03453 -13.75607 -13.51471 -13.36306 -13.20678 -13.11358 -13.02822 -12.81831 -12.69800 -12.61658 -12.53549 -12.25590 -12.09763 -11.98720 -11.93798 -11.90821 -11.48025 -11.34145 -11.13885 -10.87621 -10.77173 -10.57479 -10.31361 -9.66463 -8.73088 -7.88697 -5.34247 0.53856 1.07450 1.47595 1.48636 1.52457 1.57636 1.80310 1.87057 2.50791 2.92078 3.09488 3.21932 3.27043 3.44265 3.64290 3.70854 3.77252 3.82135 3.97628 4.04464 4.13405 4.15810 4.21792 4.32379 4.35827 4.44314 4.47462 4.57005 4.64278 4.67671 4.74653 4.76010 4.83740 4.89443 4.89742 4.93652 4.95095 5.02717 5.04634 5.08918 5.13243 5.29416 5.30280 5.44614 5.47054 5.52151 5.63308 5.69490 5.74841 6.33688 6.37555 7.02925 7.06501 7.12955 7.83213 8.35434 9.18200 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024369 B = 0.002173 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.738926 B =12882.455086 C =13451.108679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.206 3.794 3 N -0.564 5.564 4 C 0.276 3.724 5 N -0.380 5.380 6 N -0.344 5.344 7 C 0.132 3.868 8 C -0.109 4.109 9 H 0.134 0.866 10 C 0.523 3.477 11 O -0.569 6.569 12 N -0.602 5.602 13 C 0.060 3.940 14 C 0.156 3.844 15 C -0.128 4.128 16 C 0.180 3.820 17 N -0.608 5.608 18 C -0.260 4.260 19 H 0.070 0.930 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.283 1.283 24 H -0.298 1.298 25 H -0.268 1.268 26 C 0.142 3.858 27 C -0.121 4.121 28 C -0.104 4.104 29 C -0.033 4.033 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.060 0.940 41 H -0.010 1.010 42 H 0.059 0.941 43 H 0.250 0.750 44 H 0.007 0.993 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.103 0.897 50 H 0.122 0.878 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.297 12.792 1.649 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 N -0.293 5.293 4 C 0.000 4.000 5 N -0.171 5.171 6 N -0.173 5.173 7 C 0.010 3.990 8 C -0.132 4.132 9 H 0.152 0.848 10 C 0.310 3.690 11 O -0.448 6.448 12 N -0.333 5.333 13 C -0.082 4.082 14 C 0.052 3.948 15 C -0.168 4.168 16 C 0.053 3.947 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.088 0.912 20 C -0.248 4.248 21 N -0.582 5.582 22 Si 0.796 3.204 23 H -0.210 1.210 24 H -0.225 1.225 25 H -0.193 1.193 26 C 0.016 3.984 27 C -0.161 4.161 28 C -0.142 4.142 29 C -0.073 4.073 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.141 0.859 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.008 0.992 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.121 0.879 50 H 0.140 0.860 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.061 12.526 1.975 26.318 hybrid contribution 1.245 -0.924 -0.426 1.608 sum -21.816 11.602 1.549 24.758 Atomic orbital electron populations 1.20234 0.81546 1.04869 1.04807 1.25170 0.99791 0.85183 0.97442 1.70213 1.00622 1.31420 1.27024 1.24979 0.95637 0.84293 0.95103 1.50215 1.05544 1.06194 1.55116 1.77895 0.87193 1.23448 1.28740 1.22084 0.77834 0.94083 1.04974 1.21639 0.90166 0.96344 1.05012 0.84789 1.20503 0.88431 0.80589 0.79451 1.90726 1.48810 1.66830 1.38450 1.48096 1.18212 1.21913 1.45042 1.22253 0.91429 1.00553 0.93934 1.20805 0.84203 0.92710 0.97057 1.22290 0.97875 0.99841 0.96784 1.20536 0.92321 0.85085 0.96733 1.44343 1.61649 1.03636 1.23564 1.19525 1.04427 0.87634 1.27402 0.91208 1.25821 0.95279 1.00182 1.03470 1.70191 1.12732 1.32841 1.42482 0.85259 0.76288 0.79664 0.79180 1.21006 1.22531 1.19267 1.21003 0.91052 0.98645 0.87691 1.22152 0.98102 0.94881 1.00961 1.21554 0.99181 0.93784 0.99686 1.20592 0.84520 0.95466 1.06679 0.88541 0.89165 0.88678 0.85900 0.89388 0.90545 0.88703 0.90218 0.91207 0.91279 0.92150 0.99168 0.92223 0.94114 0.97459 0.92022 0.90933 0.90889 0.91260 0.87860 0.85968 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.51 71.24 0.75 0.05 16 2 C 0.21 4.41 8.15 138.48 1.13 5.54 16 3 N -0.56 -12.64 11.18 -179.31 -2.01 -14.65 16 4 C 0.28 5.24 7.72 138.37 1.07 6.31 16 5 N -0.38 -7.59 4.04 -338.34 -1.37 -8.96 16 6 N -0.34 -8.07 12.74 -51.08 -0.65 -8.72 16 7 C 0.13 2.05 6.09 86.52 0.53 2.58 16 8 C -0.11 -1.62 1.74 -11.39 -0.02 -1.64 16 9 H 0.13 1.41 7.38 -2.38 -0.02 1.40 16 10 C 0.52 12.02 7.06 87.66 0.62 12.64 16 11 O -0.57 -18.03 15.16 -3.04 -0.05 -18.07 16 12 N -0.60 -13.79 2.76 -822.45 -2.27 -16.06 16 13 C 0.06 0.92 7.87 127.77 1.01 1.93 16 14 C 0.16 4.88 2.48 45.02 0.11 4.99 16 15 C -0.13 -4.51 5.31 30.67 0.16 -4.35 16 16 C 0.18 8.50 5.31 86.36 0.46 8.96 16 17 N -0.61 -29.71 2.99 -699.11 -2.09 -31.80 16 18 C -0.26 -13.88 9.59 84.03 0.81 -13.07 16 19 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 20 C -0.05 -2.87 4.91 84.86 0.42 -2.45 16 21 N -0.94 -54.95 11.19 21.65 0.24 -54.71 16 22 Si 0.97 43.95 29.59 68.60 2.03 45.98 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 C 0.14 5.72 6.51 86.36 0.56 6.28 16 27 C -0.12 -3.75 5.34 30.67 0.16 -3.59 16 28 C -0.10 -1.44 4.68 30.80 0.14 -1.29 16 29 C -0.03 -0.38 6.33 30.07 0.19 -0.19 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.12 1.58 4.90 -2.39 -0.01 1.57 16 34 H 0.09 1.49 8.12 -2.38 -0.02 1.47 16 35 H 0.08 0.97 7.18 -2.39 -0.02 0.95 16 36 H 0.09 0.96 5.90 -2.39 -0.01 0.95 16 37 H 0.08 1.37 6.46 -2.39 -0.02 1.36 16 38 H 0.07 2.62 6.90 -2.39 -0.02 2.60 16 39 H 0.07 2.30 6.73 -2.38 -0.02 2.29 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 42 H 0.06 3.19 6.04 -2.39 -0.01 3.18 16 43 H 0.25 14.23 8.31 -92.72 -0.77 13.46 16 44 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 45 H 0.06 2.39 7.94 -2.39 -0.02 2.37 16 46 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 47 H 0.07 2.13 7.72 -2.38 -0.02 2.11 16 48 H 0.07 1.13 8.12 -2.38 -0.02 1.12 16 49 H 0.10 1.45 7.80 -2.39 -0.02 1.44 16 50 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -74.57 391.22 2.87 -71.70 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.93 Total: 12.58 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 8.09 Total: 22.70 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -8.14 Total: -134.89 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.05 Total: -18.07 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -74.57 2.87 -71.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005771414.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.224 kcal (2) G-P(sol) polarization free energy of solvation -74.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds