Wall clock time and date at job start Wed Apr 1 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30840 * 126.46407 * 2 1 4 4 N 1.28907 * 109.73673 * 180.02562 * 3 2 1 5 5 C 1.29833 * 109.48343 * 0.02562 * 4 3 2 6 6 N 1.34692 * 126.46288 * 179.97438 * 2 1 3 7 7 C 1.46256 * 128.84869 * 359.93606 * 6 2 1 8 8 C 1.53314 * 108.72934 * 197.03671 * 7 6 2 9 9 H 1.08999 * 109.45176 * 69.73046 * 8 7 6 10 10 C 1.50704 * 109.45512 * 189.67800 * 8 7 6 11 11 O 1.21282 * 119.99429 * 22.68470 * 10 8 7 12 12 N 1.34771 * 120.00577 * 202.40446 * 10 8 7 13 13 C 1.46494 * 120.00315 * 185.28696 * 12 10 8 14 14 C 1.46503 * 119.99582 * 5.28402 * 12 10 8 15 15 C 1.53036 * 109.46071 * 235.97876 * 14 12 10 16 16 C 1.53188 * 109.31438 * 178.61378 * 15 14 12 17 17 N 1.46934 * 108.77335 * 54.63956 * 16 15 14 18 18 C 1.36936 * 120.63259 * 126.41105 * 17 16 15 19 19 H 1.08007 * 120.00117 * 330.52557 * 18 17 16 20 20 C 1.38813 * 120.00501 * 150.52193 * 18 17 16 21 21 N 1.31611 * 120.00138 * 165.29310 * 20 18 17 22 22 Si 1.86806 * 119.99305 * 345.29419 * 20 18 17 23 23 H 1.48500 * 109.47098 * 95.23926 * 22 20 18 24 24 H 1.48500 * 109.46639 * 215.23776 * 22 20 18 25 25 H 1.48492 * 109.47318 * 335.23703 * 22 20 18 26 26 C 1.46922 * 118.73672 * 306.39126 * 17 16 15 27 27 C 1.53041 * 109.45609 * 115.91567 * 14 12 10 28 28 C 1.53133 * 109.58948 * 309.71818 * 8 7 6 29 29 C 1.50799 * 128.52431 * 179.85995 * 5 4 3 30 30 H 1.08999 * 109.47060 * 269.99883 * 1 2 3 31 31 H 1.08997 * 109.47005 * 29.99834 * 1 2 3 32 32 H 1.09004 * 109.47011 * 150.00222 * 1 2 3 33 33 H 1.08999 * 109.59302 * 77.26607 * 7 6 2 34 34 H 1.08995 * 109.59437 * 316.81233 * 7 6 2 35 35 H 1.08997 * 109.47431 * 87.85850 * 13 12 10 36 36 H 1.09002 * 109.47262 * 207.85968 * 13 12 10 37 37 H 1.09004 * 109.47279 * 327.85525 * 13 12 10 38 38 H 1.08995 * 109.46378 * 355.94118 * 14 12 10 39 39 H 1.09000 * 109.50285 * 298.57376 * 15 14 12 40 40 H 1.09003 * 109.49540 * 58.66753 * 15 14 12 41 41 H 1.08999 * 109.59013 * 294.85329 * 16 15 14 42 42 H 1.09003 * 109.58793 * 174.41979 * 16 15 14 43 43 H 0.97002 * 120.00110 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.59051 * 293.81887 * 26 17 16 45 45 H 1.09003 * 109.70298 * 173.46487 * 26 17 16 46 46 H 1.09001 * 109.50256 * 301.33408 * 27 14 12 47 47 H 1.08996 * 109.49976 * 61.43288 * 27 14 12 48 48 H 1.09004 * 109.50559 * 189.37644 * 28 8 7 49 49 H 1.09001 * 109.50105 * 309.47218 * 28 8 7 50 50 H 1.09001 * 109.73059 * 315.62617 * 29 5 4 51 51 H 1.09000 * 109.72824 * 76.26807 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5816 -0.6156 -0.0015 6 7 2.3075 -1.0832 0.0005 7 6 1.9367 -2.4980 0.0024 8 6 3.1551 -3.3257 0.4276 9 1 3.3624 -3.1506 1.4833 10 6 2.8690 -4.7891 0.2086 11 8 2.0215 -5.1283 -0.5899 12 7 3.5588 -5.7209 0.8958 13 6 3.3638 -7.1425 0.6006 14 6 4.5036 -5.3121 1.9381 15 6 5.8847 -5.8956 1.6317 16 6 6.8777 -5.4378 2.7045 17 7 6.3481 -5.8027 4.0256 18 6 7.1044 -6.5327 4.9032 19 1 7.8390 -7.2318 4.5314 20 6 6.9273 -6.3742 6.2709 21 7 7.4277 -7.2596 7.1062 22 14 5.9784 -4.9043 6.9255 23 1 4.5620 -5.2896 7.1502 24 1 6.5796 -4.4584 8.2081 25 1 6.0394 -3.7963 5.9386 26 6 4.9917 -5.3691 4.3873 27 6 4.0198 -5.8277 3.2954 28 6 4.3719 -2.9137 -0.4058 29 6 4.8051 -1.4970 -0.0052 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6241 -2.7953 -0.9986 34 1 1.1204 -2.6610 0.7061 35 1 4.0418 -7.4441 -0.1978 36 1 3.5705 -7.7309 1.4945 37 1 2.3339 -7.3102 0.2854 38 1 4.5670 -4.2243 1.9645 39 1 5.8276 -6.9841 1.6296 40 1 6.2185 -5.5466 0.6545 41 1 7.0045 -4.3567 2.6476 42 1 7.8379 -5.9292 2.5474 43 1 7.3036 -7.1490 8.0619 44 1 4.9646 -4.2825 4.4676 45 1 4.7059 -5.8132 5.3408 46 1 3.0262 -5.4304 3.5025 47 1 3.9802 -6.9168 3.2777 48 1 5.1906 -3.6098 -0.2233 49 1 4.1102 -2.9286 -1.4638 50 1 5.5305 -1.1166 -0.7245 51 1 5.2487 -1.5150 0.9903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006444556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:23 Heat of formation + Delta-G solvation = 49.585828 kcal Electronic energy + Delta-G solvation = -32392.993626 eV Core-core repulsion = 28328.589800 eV Total energy + Delta-G solvation = -4064.403826 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.38638 -41.62246 -39.46336 -37.90217 -36.70807 -35.15065 -34.18496 -32.73991 -31.99794 -31.88818 -31.51166 -28.57118 -28.32296 -26.90263 -25.54370 -24.45054 -24.21605 -23.59207 -22.39187 -21.27103 -21.04898 -19.72127 -18.83201 -18.70157 -17.71766 -17.40481 -17.32783 -16.84410 -16.39723 -15.99161 -15.91937 -15.34478 -15.31444 -15.24189 -14.98440 -14.85785 -14.79232 -14.52172 -14.13953 -13.99749 -13.95156 -13.67828 -13.50421 -13.44425 -13.31790 -13.17461 -13.00159 -12.64450 -12.61151 -12.40805 -12.23792 -12.16976 -12.10155 -11.88040 -11.68746 -11.48788 -11.37914 -11.37172 -11.11009 -10.87359 -10.73799 -10.03834 -9.70456 -8.88823 -8.13203 -5.49969 0.78263 1.30283 1.31006 1.43473 1.45348 1.51080 1.76605 1.91503 2.42941 3.05049 3.11154 3.12217 3.24530 3.36686 3.50103 3.53531 3.66504 3.82031 3.92143 3.96420 4.03615 4.17616 4.22991 4.29463 4.33833 4.41297 4.47912 4.53716 4.61154 4.63312 4.64177 4.66146 4.72887 4.79938 4.82455 4.84451 4.92413 4.94112 4.95057 4.98495 5.00117 5.08107 5.15506 5.21810 5.22838 5.36253 5.54094 5.86902 5.91370 6.16277 6.28909 6.95422 6.98767 7.65027 7.66779 8.03585 9.06804 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012487 B = 0.003313 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.765448 B = 8449.820736 C = 9464.526005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.180 3.820 3 N -0.347 5.347 4 N -0.336 5.336 5 C 0.175 3.825 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.123 4.123 9 H 0.117 0.883 10 C 0.532 3.468 11 O -0.569 6.569 12 N -0.597 5.597 13 C 0.083 3.917 14 C 0.146 3.854 15 C -0.131 4.131 16 C 0.145 3.855 17 N -0.620 5.620 18 C -0.242 4.242 19 H 0.052 0.948 20 C -0.040 4.040 21 N -0.966 5.966 22 Si 0.948 3.052 23 H -0.281 1.281 24 H -0.320 1.320 25 H -0.243 1.243 26 C 0.121 3.879 27 C -0.137 4.137 28 C -0.108 4.108 29 C -0.029 4.029 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.259 0.741 44 H 0.044 0.956 45 H 0.045 0.955 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.111 0.889 49 H 0.080 0.920 50 H 0.119 0.881 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.934 7.804 -17.797 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.088 4.088 3 N -0.187 5.187 4 N -0.174 5.174 5 C -0.094 4.094 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.144 4.144 9 H 0.135 0.865 10 C 0.320 3.680 11 O -0.449 6.449 12 N -0.327 5.327 13 C -0.060 4.060 14 C 0.043 3.957 15 C -0.170 4.170 16 C 0.020 3.980 17 N -0.345 5.345 18 C -0.372 4.372 19 H 0.070 0.930 20 C -0.234 4.234 21 N -0.612 5.612 22 Si 0.778 3.222 23 H -0.208 1.208 24 H -0.250 1.250 25 H -0.167 1.167 26 C -0.004 4.004 27 C -0.177 4.177 28 C -0.146 4.146 29 C -0.069 4.069 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.079 0.921 48 H 0.129 0.871 49 H 0.099 0.901 50 H 0.137 0.863 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.939 9.012 -18.098 24.003 hybrid contribution -0.469 -1.137 1.201 1.719 sum -13.407 7.875 -16.897 22.963 Atomic orbital electron populations 1.20434 0.80858 1.05865 1.05392 1.25400 0.98611 0.82263 1.02510 1.74386 0.96666 1.25575 1.22058 1.73944 1.12864 1.09934 1.20698 1.25308 0.88424 0.92222 1.03415 1.46093 1.06634 1.08890 1.54367 1.21887 0.97910 0.74384 1.05682 1.21662 0.97061 0.91428 1.04287 0.86519 1.20201 0.80246 0.87602 0.79972 1.90704 1.34109 1.82780 1.37266 1.47988 1.41445 1.07018 1.36254 1.21674 1.02419 0.80077 1.01782 1.21264 0.88352 1.00673 0.85426 1.22263 0.93908 1.01281 0.99593 1.21118 0.95817 0.98267 0.82822 1.44480 1.11590 1.63166 1.15281 1.18860 1.16641 1.14514 0.87140 0.93030 1.25997 1.00567 1.00337 0.96492 1.69922 1.51491 1.37085 1.02741 0.85936 0.77394 0.82096 0.76791 1.20829 1.25021 1.16683 1.21416 0.84804 0.97475 0.96731 1.22308 0.98793 1.01744 0.94834 1.21678 0.96616 0.96320 1.00017 1.20410 0.90095 0.90328 1.06032 0.88131 0.88086 0.88307 0.87572 0.86853 0.91606 0.90695 0.91147 0.87221 0.92343 0.88777 0.93336 0.92388 0.93172 0.93847 0.93690 0.90543 0.92114 0.87100 0.90127 0.86277 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.29 71.24 0.73 -0.01 16 2 C 0.18 3.78 8.07 138.14 1.11 4.89 16 3 N -0.35 -10.02 12.23 -50.46 -0.62 -10.63 16 4 N -0.34 -9.82 12.21 -50.28 -0.61 -10.44 16 5 C 0.18 3.79 7.75 138.14 1.07 4.86 16 6 N -0.47 -8.79 3.11 -504.67 -1.57 -10.36 16 7 C 0.12 1.72 5.72 86.53 0.49 2.22 16 8 C -0.12 -1.67 1.68 -11.39 -0.02 -1.69 16 9 H 0.12 1.49 6.28 -2.39 -0.01 1.48 16 10 C 0.53 9.60 6.78 87.66 0.59 10.20 16 11 O -0.57 -13.54 15.45 -3.03 -0.05 -13.59 16 12 N -0.60 -10.80 2.76 -822.46 -2.27 -13.07 16 13 C 0.08 1.50 9.38 127.77 1.20 2.69 16 14 C 0.15 2.86 2.04 45.02 0.09 2.95 16 15 C -0.13 -2.81 5.27 30.67 0.16 -2.64 16 16 C 0.14 4.30 6.52 86.36 0.56 4.86 16 17 N -0.62 -24.93 2.77 -699.08 -1.94 -26.87 16 18 C -0.24 -12.64 10.07 84.03 0.85 -11.79 16 19 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 20 C -0.04 -2.22 5.33 84.86 0.45 -1.76 16 21 N -0.97 -59.05 13.97 21.65 0.30 -58.75 16 22 Si 0.95 43.82 24.31 68.60 1.67 45.48 16 23 H -0.28 -12.40 6.78 99.48 0.67 -11.72 16 24 H -0.32 -15.59 7.11 99.48 0.71 -14.88 16 25 H -0.24 -10.15 5.98 99.48 0.59 -9.56 16 26 C 0.12 4.27 4.13 86.36 0.36 4.63 16 27 C -0.14 -3.55 5.39 30.67 0.17 -3.38 16 28 C -0.11 -1.22 5.02 30.79 0.15 -1.06 16 29 C -0.03 -0.39 6.34 30.03 0.19 -0.20 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 0.69 8.04 -2.38 -0.02 0.67 16 33 H 0.11 1.53 7.53 -2.39 -0.02 1.51 16 34 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.40 6.66 -2.39 -0.02 1.39 16 37 H 0.07 1.34 7.42 -2.38 -0.02 1.32 16 38 H 0.11 1.78 5.12 -2.39 -0.01 1.76 16 39 H 0.06 1.44 7.62 -2.39 -0.02 1.42 16 40 H 0.09 1.46 8.00 -2.39 -0.02 1.44 16 41 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.84 7.93 -2.39 -0.02 1.83 16 43 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.04 1.44 6.69 -2.39 -0.02 1.42 16 45 H 0.04 1.86 4.44 -2.39 -0.01 1.85 16 46 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 47 H 0.06 1.74 6.88 -2.39 -0.02 1.72 16 48 H 0.11 0.97 7.61 -2.38 -0.02 0.95 16 49 H 0.08 0.96 8.12 -2.39 -0.02 0.94 16 50 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -76.69 386.27 3.87 -72.82 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.79 Total: 10.66 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 8.17 Total: 14.75 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -6.71 Total: -130.12 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.05 Total: -13.59 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.67 Total: 45.48 kcal Total: -76.69 3.87 -72.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006444556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.403 kcal (2) G-P(sol) polarization free energy of solvation -76.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds