Wall clock time and date at job start Wed Apr 1 2020 05:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36606 * 126.57709 * 2 1 4 4 C 1.47516 * 125.77022 * 0.02962 * 3 2 1 5 5 O 1.21594 * 120.00228 * 0.30730 * 4 3 2 6 6 N 1.34783 * 119.99832 * 180.30763 * 4 3 2 7 7 C 1.46500 * 119.99759 * 180.02562 * 6 4 3 8 8 H 1.08992 * 115.55527 * 9.29848 * 7 6 4 9 9 C 1.53027 * 117.50197 * 223.60621 * 7 6 4 10 10 C 1.52822 * 117.49686 * 155.02452 * 7 6 4 11 11 C 1.53176 * 117.71666 * 359.86176 * 10 7 6 12 12 C 1.53348 * 108.77167 * 158.88926 * 11 10 7 13 13 N 1.46837 * 108.81873 * 51.30680 * 12 11 10 14 14 C 1.36932 * 120.38760 * 123.11877 * 13 12 11 15 15 H 1.07994 * 120.00247 * 331.80355 * 14 13 12 16 16 C 1.38813 * 120.00001 * 151.80008 * 14 13 12 17 17 N 1.31627 * 120.00088 * 159.30574 * 16 14 13 18 18 Si 1.86796 * 120.00014 * 339.30258 * 16 14 13 19 19 H 1.48505 * 109.47111 * 94.25177 * 18 16 14 20 20 H 1.48501 * 109.47270 * 214.24835 * 18 16 14 21 21 H 1.48497 * 109.47311 * 334.25054 * 18 16 14 22 22 C 1.46854 * 119.23141 * 303.10204 * 13 12 11 23 23 C 1.53184 * 117.71259 * 215.09660 * 10 7 6 24 24 N 1.34403 * 108.45762 * 180.27636 * 3 2 1 25 25 N 1.28764 * 109.52236 * 359.73609 * 24 3 2 26 26 N 1.34810 * 126.58429 * 179.82451 * 2 1 3 27 27 C 1.46498 * 126.59043 * 359.97438 * 26 2 1 28 28 C 1.53000 * 109.47148 * 239.70863 * 27 26 2 29 29 C 1.53006 * 109.47024 * 119.71412 * 27 26 2 30 30 H 1.08999 * 109.47398 * 270.17327 * 1 2 3 31 31 H 1.09000 * 109.47615 * 30.17581 * 1 2 3 32 32 H 1.09008 * 109.46921 * 150.17681 * 1 2 3 33 33 H 0.96999 * 120.00010 * 359.97438 * 6 4 3 34 34 H 1.09001 * 117.50731 * 0.02562 * 9 7 6 35 35 H 1.09002 * 117.50190 * 145.01980 * 9 7 6 36 36 H 1.09007 * 109.58512 * 278.67352 * 11 10 7 37 37 H 1.08999 * 109.59247 * 39.10079 * 11 10 7 38 38 H 1.08999 * 109.57964 * 291.50482 * 12 11 10 39 39 H 1.08999 * 109.57998 * 171.10638 * 12 11 10 40 40 H 0.96995 * 120.00032 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.57533 * 297.10399 * 22 13 12 42 42 H 1.09001 * 109.58135 * 176.70341 * 22 13 12 43 43 H 1.09002 * 109.58905 * 320.90962 * 23 10 7 44 44 H 1.09006 * 109.58593 * 81.33113 * 23 10 7 45 45 H 1.08993 * 109.47369 * 359.71307 * 27 26 2 46 46 H 1.09001 * 109.46908 * 60.00698 * 28 27 26 47 47 H 1.08999 * 109.47114 * 180.02562 * 28 27 26 48 48 H 1.08993 * 109.47348 * 300.00457 * 28 27 26 49 49 H 1.09003 * 109.46951 * 59.99856 * 29 27 26 50 50 H 1.08999 * 109.47208 * 179.97438 * 29 27 26 51 51 H 1.08998 * 109.46812 * 299.99796 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5027 0.0006 5 8 0.6859 2.7628 0.0068 6 7 2.7816 3.4988 -0.0057 7 6 2.3374 4.8948 -0.0045 8 1 1.2710 5.0488 0.1604 9 6 3.0541 5.8653 -0.9459 10 6 3.2977 5.9404 0.5611 11 6 4.6512 5.4536 1.0879 12 6 5.6283 6.6353 1.1041 13 7 5.0000 7.7599 1.8089 14 6 5.6103 8.3229 2.8977 15 1 6.2644 7.7281 3.5178 16 6 5.3882 9.6584 3.2045 17 7 5.6166 10.1006 4.4230 18 14 4.7653 10.8280 1.8879 19 1 3.2847 10.9152 1.9635 20 1 5.3521 12.1749 2.1045 21 1 5.1638 10.3239 0.5492 22 6 3.7096 8.2740 1.3323 23 6 2.6935 7.1255 1.3208 24 7 3.5984 0.6790 -0.0061 25 7 3.6299 -0.6082 -0.0044 26 7 2.3105 -1.0825 0.0033 27 6 1.8864 -2.4848 0.0081 28 6 2.4357 -3.1794 1.2558 29 6 2.4228 -3.1841 -1.2426 30 1 -0.3634 0.0031 1.0276 31 1 -0.3634 0.8884 -0.5165 32 1 -0.3633 -0.8916 -0.5111 33 1 3.7292 3.2914 -0.0103 34 1 3.8559 5.4651 -1.5664 35 1 2.4592 6.6577 -1.4002 36 1 4.5313 5.0647 2.0991 37 1 5.0366 4.6697 0.4359 38 1 5.8621 6.9301 0.0811 39 1 6.5432 6.3457 1.6209 40 1 5.4611 11.0337 4.6374 41 1 3.8245 8.6702 0.3233 42 1 3.3618 9.0629 1.9992 43 1 1.7798 7.4509 0.8234 44 1 2.4681 6.8267 2.3446 45 1 0.7977 -2.5351 0.0138 46 1 2.0536 -2.6813 2.1469 47 1 2.1206 -4.2228 1.2592 48 1 3.5244 -3.1290 1.2501 49 1 3.5116 -3.1337 -1.2483 50 1 2.1077 -4.2275 -1.2388 51 1 2.0315 -2.6892 -2.1315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016904453.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:52 Heat of formation + Delta-G solvation = 79.323639 kcal Electronic energy + Delta-G solvation = -30721.845614 eV Core-core repulsion = 26658.731316 eV Total energy + Delta-G solvation = -4063.114298 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.36770 -41.04233 -39.70302 -37.38654 -37.31026 -34.60738 -33.99502 -33.59359 -32.07597 -31.85816 -30.27190 -28.80284 -28.28786 -26.04790 -25.15062 -24.75915 -24.47379 -23.00535 -22.26777 -21.55853 -21.00327 -19.88860 -18.90003 -18.34095 -17.60628 -17.29668 -17.24526 -16.98641 -15.95057 -15.77235 -15.67600 -15.50830 -15.29617 -15.25201 -15.04983 -14.56220 -14.38056 -14.25894 -14.06627 -13.98958 -13.96136 -13.83355 -13.44413 -13.25651 -13.20839 -12.99852 -12.92873 -12.60305 -12.54104 -12.43738 -12.42164 -12.23833 -12.12013 -11.95452 -11.60903 -11.47736 -11.34093 -11.20207 -11.14620 -10.78084 -10.63725 -10.25981 -9.65976 -8.84911 -8.15119 -5.46533 0.09440 0.56484 1.02647 1.31429 1.42750 1.52797 2.00207 2.12339 2.43493 2.93453 3.08232 3.11592 3.28123 3.37270 3.52166 3.69025 3.73125 3.79812 3.81855 3.92661 3.96727 4.03155 4.09533 4.38551 4.45770 4.53729 4.59273 4.60974 4.62424 4.63871 4.70314 4.70821 4.74445 4.80124 4.83915 4.89335 4.93256 4.94871 5.00413 5.12645 5.13530 5.17327 5.22086 5.22245 5.31687 5.46482 5.51287 5.56324 5.89646 6.14612 6.37036 6.87424 6.95463 7.08827 7.65711 8.06063 9.04972 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.002110 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.340458 B =13268.595117 C =13749.521345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.133 3.867 3 C -0.134 4.134 4 C 0.609 3.391 5 O -0.558 6.558 6 N -0.680 5.680 7 C 0.086 3.914 8 H 0.134 0.866 9 C -0.162 4.162 10 C -0.120 4.120 11 C -0.087 4.087 12 C 0.148 3.852 13 N -0.619 5.619 14 C -0.248 4.248 15 H 0.047 0.953 16 C -0.039 4.039 17 N -0.959 5.959 18 Si 0.950 3.050 19 H -0.274 1.274 20 H -0.312 1.312 21 H -0.258 1.258 22 C 0.127 3.873 23 C -0.090 4.090 24 N -0.226 5.226 25 N -0.085 5.085 26 N -0.345 5.345 27 C 0.132 3.868 28 C -0.160 4.160 29 C -0.160 4.160 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.412 0.588 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.261 0.739 41 H 0.040 0.960 42 H 0.047 0.953 43 H 0.085 0.915 44 H 0.050 0.950 45 H 0.143 0.857 46 H 0.057 0.943 47 H 0.113 0.887 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.112 0.888 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.867 -30.201 -15.059 36.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.007 4.007 3 C -0.274 4.274 4 C 0.394 3.606 5 O -0.436 6.436 6 N -0.328 5.328 7 C -0.020 4.020 8 H 0.151 0.849 9 C -0.200 4.200 10 C -0.122 4.122 11 C -0.126 4.126 12 C 0.024 3.976 13 N -0.343 5.343 14 C -0.378 4.378 15 H 0.065 0.935 16 C -0.233 4.233 17 N -0.605 5.605 18 Si 0.779 3.221 19 H -0.201 1.201 20 H -0.241 1.241 21 H -0.182 1.182 22 C 0.002 3.998 23 C -0.129 4.129 24 N -0.099 5.099 25 N -0.064 5.064 26 N -0.132 5.132 27 C 0.032 3.968 28 C -0.218 4.218 29 C -0.217 4.217 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.249 0.751 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.069 0.931 45 H 0.161 0.839 46 H 0.076 0.924 47 H 0.131 0.869 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.131 0.869 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.182 -30.380 -14.976 36.345 hybrid contribution -0.096 1.239 0.236 1.265 sum -13.278 -29.141 -14.740 35.253 Atomic orbital electron populations 1.20849 0.82364 1.06346 1.05685 1.22365 0.97483 0.85782 0.95030 1.21214 0.89687 0.95370 1.21116 1.16834 0.85281 0.82955 0.75486 1.90729 1.16480 1.83999 1.52406 1.45158 1.10253 1.04527 1.72871 1.21762 0.97730 0.77603 1.04898 0.84868 1.23675 1.03179 1.01313 0.91868 1.21765 0.96547 0.97518 0.96320 1.21433 0.93431 0.97563 1.00176 1.21027 0.94472 0.86848 0.95287 1.44412 1.19195 1.37770 1.32936 1.18861 1.24907 0.92748 1.01287 0.93508 1.25966 1.00672 0.98532 0.98152 1.69984 1.54808 1.15973 1.19743 0.85831 0.77600 0.77451 0.81206 1.20082 1.24127 1.18240 1.21338 0.85771 0.95568 0.97130 1.21534 0.97765 0.94127 0.99523 1.74595 1.19697 1.05004 1.10643 1.81844 0.98180 1.02791 1.23592 1.50984 1.05152 1.08567 1.48516 1.22209 1.02479 0.73067 0.98997 1.22168 1.01987 1.02564 0.95096 1.22173 1.02069 1.02507 0.94992 0.87862 0.88441 0.87083 0.75116 0.87452 0.86681 0.93309 0.90085 0.94151 0.92855 0.93025 0.94210 0.93500 0.89622 0.93136 0.83898 0.92428 0.86852 0.92557 0.92539 0.86900 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.40 71.24 0.67 -0.35 16 2 C 0.13 2.40 7.02 41.72 0.29 2.69 16 3 C -0.13 -3.30 6.99 40.82 0.29 -3.02 16 4 C 0.61 16.44 7.82 86.69 0.68 17.12 16 5 O -0.56 -16.50 14.29 -4.01 -0.06 -16.56 16 6 N -0.68 -17.53 5.34 -445.96 -2.38 -19.92 16 7 C 0.09 2.24 6.14 44.94 0.28 2.52 16 8 H 0.13 3.61 7.40 -2.39 -0.02 3.60 16 9 C -0.16 -3.86 9.86 30.55 0.30 -3.55 16 10 C -0.12 -3.57 1.94 -52.17 -0.10 -3.67 16 11 C -0.09 -2.79 5.37 30.77 0.17 -2.63 16 12 C 0.15 5.80 6.51 86.43 0.56 6.36 16 13 N -0.62 -29.64 2.71 -698.91 -1.89 -31.53 16 14 C -0.25 -14.47 10.00 84.03 0.84 -13.63 16 15 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 16 C -0.04 -2.32 5.23 84.86 0.44 -1.88 16 17 N -0.96 -61.70 13.97 21.65 0.30 -61.39 16 18 Si 0.95 47.41 24.40 68.60 1.67 49.08 16 19 H -0.27 -12.88 6.66 99.48 0.66 -12.22 16 20 H -0.31 -15.84 7.11 99.48 0.71 -15.14 16 21 H -0.26 -12.23 6.65 99.48 0.66 -11.56 16 22 C 0.13 5.39 4.23 86.43 0.37 5.76 16 23 C -0.09 -3.11 5.83 30.77 0.18 -2.93 16 24 N -0.23 -6.01 12.04 -49.99 -0.60 -6.62 16 25 N -0.08 -2.00 13.67 37.02 0.51 -1.49 16 26 N -0.35 -5.59 3.28 -313.39 -1.03 -6.61 16 27 C 0.13 0.89 3.68 44.99 0.17 1.06 16 28 C -0.16 -1.01 9.47 71.98 0.68 -0.33 16 29 C -0.16 -0.87 9.47 71.98 0.68 -0.18 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 1.46 6.45 -2.39 -0.02 1.45 16 32 H 0.11 0.35 7.19 -2.38 -0.02 0.33 16 33 H 0.41 10.16 6.80 -92.71 -0.63 9.53 16 34 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.08 2.13 6.75 -2.39 -0.02 2.11 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 2.15 7.92 -2.39 -0.02 2.13 16 40 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 41 H 0.04 1.60 7.27 -2.39 -0.02 1.58 16 42 H 0.05 2.22 4.31 -2.39 -0.01 2.21 16 43 H 0.09 2.44 8.10 -2.39 -0.02 2.43 16 44 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 45 H 0.14 0.05 6.79 -2.39 -0.02 0.03 16 46 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 51 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -77.72 402.11 3.23 -74.49 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.23 Total: 17.23 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.49 Total: 3.33 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -5.10 Total: -127.57 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.06 Total: -16.56 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.67 Total: 49.08 kcal Total: -77.72 3.23 -74.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016904453.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.811 kcal (2) G-P(sol) polarization free energy of solvation -77.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds