Wall clock time and date at job start Wed Apr 1 2020 05:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36599 * 126.58440 * 2 1 4 4 C 1.47520 * 125.76743 * 0.04269 * 3 2 1 5 5 O 1.21597 * 120.00256 * 359.71434 * 4 3 2 6 6 N 1.34781 * 120.00159 * 179.71441 * 4 3 2 7 7 C 1.46493 * 120.00358 * 180.02562 * 6 4 3 8 8 C 1.53144 * 109.43588 * 205.00198 * 7 6 4 9 9 C 1.53705 * 108.87613 * 186.08567 * 8 7 6 10 10 H 1.08998 * 112.58319 * 187.93011 * 9 8 7 11 11 C 1.54223 * 107.72188 * 312.05760 * 9 8 7 12 12 C 1.54317 * 104.78870 * 88.98263 * 11 9 8 13 13 C 1.54609 * 104.74961 * 359.82002 * 12 11 9 14 14 H 1.09001 * 112.18992 * 146.80291 * 13 12 11 15 15 C 1.53702 * 108.37375 * 271.11279 * 13 12 11 16 16 N 1.48290 * 107.27703 * 64.00539 * 9 8 7 17 17 C 1.36943 * 128.20734 * 107.43775 * 16 9 8 18 18 H 1.07997 * 119.99395 * 164.68860 * 17 16 9 19 19 C 1.38803 * 119.99985 * 344.69061 * 17 16 9 20 20 N 1.31623 * 120.00162 * 350.76583 * 19 17 16 21 21 Si 1.86805 * 120.00130 * 170.76733 * 19 17 16 22 22 H 1.48492 * 109.47438 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46551 * 299.99934 * 21 19 17 24 24 H 1.48495 * 109.47093 * 59.99499 * 21 19 17 25 25 N 1.34404 * 108.46023 * 179.77666 * 3 2 1 26 26 N 1.28764 * 109.51979 * 0.23155 * 25 3 2 27 27 N 1.34821 * 126.57984 * 180.17565 * 2 1 3 28 28 C 1.46499 * 126.59004 * 359.95794 * 27 2 1 29 29 C 1.53008 * 109.46794 * 120.27928 * 28 27 2 30 30 C 1.53000 * 109.47239 * 240.27700 * 28 27 2 31 31 H 1.08996 * 109.47556 * 90.01807 * 1 2 3 32 32 H 1.09002 * 109.47247 * 210.02396 * 1 2 3 33 33 H 1.09005 * 109.47015 * 330.02119 * 1 2 3 34 34 H 0.97001 * 119.99583 * 359.97438 * 6 4 3 35 35 H 1.09006 * 109.43152 * 324.91330 * 7 6 4 36 36 H 1.08998 * 109.57251 * 66.26369 * 8 7 6 37 37 H 1.09002 * 109.56874 * 305.90311 * 8 7 6 38 38 H 1.08998 * 110.51310 * 330.07571 * 11 9 8 39 39 H 1.09008 * 110.30954 * 207.78225 * 11 9 8 40 40 H 1.08997 * 110.37853 * 241.00512 * 12 11 9 41 41 H 1.08993 * 110.38315 * 118.64166 * 12 11 9 42 42 H 1.08998 * 109.57151 * 167.84374 * 15 13 12 43 43 H 1.09005 * 109.56516 * 288.20626 * 15 13 12 44 44 H 0.97006 * 119.99704 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.47389 * 0.28027 * 28 27 2 46 46 H 1.08997 * 109.46574 * 59.99939 * 29 28 27 47 47 H 1.09003 * 109.46994 * 179.97438 * 29 28 27 48 48 H 1.08998 * 109.47165 * 300.00046 * 29 28 27 49 49 H 1.09003 * 109.47208 * 180.02562 * 30 28 27 50 50 H 1.09001 * 109.46863 * 300.00511 * 30 28 27 51 51 H 1.09000 * 109.47105 * 60.00549 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8739 2.5026 0.0009 5 8 0.6861 2.7628 -0.0035 6 7 2.7818 3.4987 0.0066 7 6 2.3378 4.8947 0.0081 8 6 3.4329 5.7785 -0.5961 9 6 3.0202 7.2518 -0.4495 10 1 3.6891 7.9287 -0.9810 11 6 1.5608 7.3807 -0.9309 12 6 0.7063 7.1150 0.3263 13 6 1.7331 6.8454 1.4503 14 1 1.3849 7.2012 2.4200 15 6 2.0506 5.3416 1.4660 16 7 2.9588 7.5495 1.0019 17 6 3.8252 8.3014 1.7498 18 1 3.5355 8.6403 2.7334 19 6 5.0757 8.6280 1.2435 20 7 5.5012 8.0697 0.1301 21 14 6.1547 9.8598 2.1423 22 1 7.4299 10.0341 1.4016 23 1 5.4505 11.1645 2.2283 24 1 6.4411 9.3608 3.5113 25 7 3.5985 0.6788 0.0050 26 7 3.6298 -0.6085 0.0032 27 7 2.3104 -1.0826 -0.0033 28 6 1.8863 -2.4849 -0.0068 29 6 2.4341 -3.1803 -1.2547 30 6 2.4239 -3.1834 1.2438 31 1 -0.3634 -0.0003 -1.0276 32 1 -0.3634 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 3.7294 3.2912 0.0105 35 1 1.4285 4.9866 -0.5861 36 1 3.5558 5.5371 -1.6519 37 1 4.3717 5.6080 -0.0692 38 1 1.3454 6.6390 -1.7001 39 1 1.3750 8.3855 -1.3108 40 1 0.0705 6.2426 0.1757 41 1 0.1017 7.9896 0.5662 42 1 2.9214 5.1588 2.0956 43 1 1.1940 4.7917 1.8560 44 1 6.3753 8.2977 -0.2235 45 1 0.7975 -2.5351 -0.0113 46 1 3.5229 -3.1300 -1.2501 47 1 2.1189 -4.2238 -1.2571 48 1 2.0511 -2.6827 -2.1456 49 1 2.1087 -4.2269 1.2410 50 1 3.5127 -3.1331 1.2483 51 1 2.0336 -2.6880 2.1328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021422900.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:44 Heat of formation + Delta-G solvation = 78.449405 kcal Electronic energy + Delta-G solvation = -31623.638223 eV Core-core repulsion = 27560.486015 eV Total energy + Delta-G solvation = -4063.152207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.36031 -39.75481 -38.38172 -36.68621 -34.44568 -33.12004 -32.57047 -31.24409 -30.22388 -29.54610 -29.10777 -27.87348 -27.78165 -24.70607 -24.16505 -23.35576 -23.13021 -21.25125 -20.55793 -19.90872 -19.22326 -18.57783 -17.75638 -16.93017 -16.30286 -16.13278 -15.97331 -14.95906 -14.79419 -14.49818 -14.34833 -14.15102 -13.97108 -13.60155 -13.40382 -13.27135 -12.99070 -12.92712 -12.79384 -12.72056 -12.61446 -12.10419 -12.08639 -12.01219 -11.82766 -11.69020 -11.48373 -11.28744 -11.14243 -10.92963 -10.74996 -10.71853 -10.46975 -10.33245 -10.11751 -9.78327 -9.76514 -9.51025 -9.33815 -9.25907 -9.16784 -8.57688 -8.41865 -6.77109 -5.72120 -3.06115 1.04483 1.78180 1.82813 3.42575 3.48056 3.48459 3.48760 3.52462 3.92158 4.07534 4.26372 4.37569 4.47440 4.51687 4.73818 4.85474 4.97781 5.06082 5.15613 5.18539 5.26912 5.34459 5.44141 5.45466 5.57805 5.58857 5.68190 5.71823 5.74780 5.89648 5.91942 6.00470 6.04087 6.13039 6.25079 6.31361 6.38924 6.53635 6.58267 6.74354 6.75382 6.81953 6.96372 7.00761 7.15923 7.19844 7.56238 7.61316 7.78135 7.82642 8.05349 8.29036 8.52069 9.18757 9.80949 10.60393 11.40572 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.002513 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.384746 B =11138.278405 C =11951.365673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.118 3.882 3 C -0.101 4.101 4 C 0.600 3.400 5 O -0.546 6.546 6 N -0.703 5.703 7 C 0.147 3.853 8 C -0.122 4.122 9 C 0.185 3.815 10 H 0.112 0.888 11 C -0.144 4.144 12 C -0.131 4.131 13 C 0.149 3.851 14 H 0.066 0.934 15 C -0.133 4.133 16 N -0.584 5.584 17 C -0.221 4.221 18 H 0.074 0.926 19 C -0.005 4.005 20 N -0.912 5.912 21 Si 0.909 3.091 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.286 1.286 25 N -0.202 5.202 26 N -0.068 5.068 27 N -0.360 5.360 28 C 0.144 3.856 29 C -0.162 4.162 30 C -0.163 4.163 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.404 0.596 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.253 0.747 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.546 -22.141 -2.569 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.020 4.020 3 C -0.241 4.241 4 C 0.384 3.616 5 O -0.424 6.424 6 N -0.351 5.351 7 C 0.044 3.956 8 C -0.162 4.162 9 C 0.077 3.923 10 H 0.130 0.870 11 C -0.183 4.183 12 C -0.170 4.170 13 C 0.040 3.960 14 H 0.084 0.916 15 C -0.174 4.174 16 N -0.305 5.305 17 C -0.350 4.350 18 H 0.091 0.909 19 C -0.202 4.202 20 N -0.559 5.559 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.213 1.213 24 H -0.212 1.212 25 N -0.075 5.075 26 N -0.047 5.047 27 N -0.147 5.147 28 C 0.043 3.957 29 C -0.220 4.220 30 C -0.221 4.221 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.239 0.761 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.126 0.874 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.093 0.907 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.623 -22.230 -2.553 24.357 hybrid contribution 0.199 0.397 0.484 0.657 sum -9.424 -21.832 -2.070 23.869 Atomic orbital electron populations 1.20706 0.84874 1.05239 1.04509 1.21917 0.96183 0.86397 0.97457 1.21412 0.88915 0.95777 1.17953 1.16756 0.85828 0.82391 0.76645 1.90724 1.15917 1.83605 1.52141 1.46210 1.09909 1.06623 1.72390 1.21796 0.98903 0.77671 0.97233 1.22377 0.98123 0.97356 0.98311 1.21365 0.92099 0.92827 0.86032 0.87043 1.22756 0.98996 0.99962 0.96603 1.22631 0.97704 0.99947 0.96725 1.21553 0.88613 0.90056 0.95760 0.91634 1.22879 1.00468 0.98262 0.95743 1.45183 1.24997 1.56448 1.03875 1.18937 0.93341 1.23490 0.99193 0.90857 1.24807 0.96457 1.00589 0.98343 1.69854 1.19408 1.44559 1.22058 0.86254 0.79763 0.81278 0.78760 1.21701 1.21299 1.21239 1.74650 1.19157 1.04053 1.09672 1.81913 0.96246 1.03380 1.23179 1.50621 1.06394 1.07111 1.50582 1.21615 1.00402 0.75453 0.98255 1.22153 1.03247 1.00784 0.95827 1.22165 1.03327 1.00782 0.95841 0.89192 0.91015 0.86794 0.76085 0.89741 0.93753 0.90226 0.92768 0.92881 0.92238 0.92856 0.91932 0.93360 0.93692 0.87370 0.90667 0.89976 0.91713 0.89977 0.90653 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 9.40 36.01 0.34 -0.48 16 2 C 0.12 1.40 7.02 -81.87 -0.57 0.83 16 3 C -0.10 -1.53 6.99 -83.55 -0.58 -2.11 16 4 C 0.60 10.15 7.79 -12.47 -0.10 10.05 16 5 O -0.55 -9.85 14.38 5.28 0.08 -9.77 16 6 N -0.70 -12.29 5.08 -53.66 -0.27 -12.56 16 7 C 0.15 2.78 2.13 -66.71 -0.14 2.64 16 8 C -0.12 -2.55 5.00 -26.29 -0.13 -2.68 16 9 C 0.18 4.21 3.12 -65.94 -0.21 4.00 16 10 H 0.11 2.90 6.36 -51.93 -0.33 2.57 16 11 C -0.14 -2.79 5.96 -25.40 -0.15 -2.94 16 12 C -0.13 -2.43 5.99 -25.20 -0.15 -2.58 16 13 C 0.15 3.10 4.28 -65.73 -0.28 2.82 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 15 C -0.13 -2.63 5.37 -25.22 -0.14 -2.77 16 16 N -0.58 -14.32 2.81 -152.99 -0.43 -14.75 16 17 C -0.22 -5.99 10.38 -15.06 -0.16 -6.15 16 18 H 0.07 1.95 7.85 -52.49 -0.41 1.54 16 19 C -0.01 -0.14 5.42 -17.43 -0.09 -0.23 16 20 N -0.91 -25.55 10.60 55.49 0.59 -24.96 16 21 Si 0.91 21.81 29.56 -169.99 -5.03 16.78 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 N -0.20 -3.19 12.04 32.85 0.40 -2.80 16 26 N -0.07 -0.95 13.67 60.35 0.82 -0.12 16 27 N -0.36 -3.84 3.28 -50.40 -0.17 -4.00 16 28 C 0.14 0.90 3.68 -67.93 -0.25 0.65 16 29 C -0.16 -0.87 9.47 37.16 0.35 -0.51 16 30 C -0.16 -0.89 9.47 37.16 0.35 -0.54 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.39 7.20 -51.93 -0.37 0.02 16 33 H 0.11 1.21 6.43 -51.93 -0.33 0.87 16 34 H 0.40 6.93 8.29 -40.82 -0.34 6.59 16 35 H 0.08 1.63 4.96 -51.93 -0.26 1.37 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.91 8.00 -51.93 -0.42 1.49 16 38 H 0.05 0.96 7.03 -51.93 -0.36 0.59 16 39 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 40 H 0.06 1.03 7.06 -51.93 -0.37 0.67 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.11 0.42 6.79 -51.93 -0.35 0.07 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 398.32 15.07 6.00 6.00 Total: -1.00 -31.28 398.32 -8.10 -39.37 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -8.18 Total: 6.80 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.91 Total: 0.00 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.94 Total: -59.19 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.28 -8.10 -39.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021422900.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.823 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds