Wall clock time and date at job start Wed Apr 1 2020 05:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36599 * 126.58440 * 2 1 4 4 C 1.47520 * 125.76743 * 0.04269 * 3 2 1 5 5 O 1.21597 * 120.00256 * 359.71434 * 4 3 2 6 6 N 1.34781 * 120.00159 * 179.71441 * 4 3 2 7 7 C 1.46493 * 120.00358 * 180.02562 * 6 4 3 8 8 C 1.53144 * 109.43588 * 205.00198 * 7 6 4 9 9 C 1.53705 * 108.87613 * 186.08567 * 8 7 6 10 10 H 1.08998 * 112.58319 * 187.93011 * 9 8 7 11 11 C 1.54223 * 107.72188 * 312.05760 * 9 8 7 12 12 C 1.54317 * 104.78870 * 88.98263 * 11 9 8 13 13 C 1.54609 * 104.74961 * 359.82002 * 12 11 9 14 14 H 1.09001 * 112.18992 * 146.80291 * 13 12 11 15 15 C 1.53702 * 108.37375 * 271.11279 * 13 12 11 16 16 N 1.48290 * 107.27703 * 64.00539 * 9 8 7 17 17 C 1.36943 * 128.20734 * 107.43775 * 16 9 8 18 18 H 1.07997 * 119.99395 * 164.68860 * 17 16 9 19 19 C 1.38803 * 119.99985 * 344.69061 * 17 16 9 20 20 N 1.31623 * 120.00162 * 350.76583 * 19 17 16 21 21 Si 1.86805 * 120.00130 * 170.76733 * 19 17 16 22 22 H 1.48492 * 109.47438 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46551 * 299.99934 * 21 19 17 24 24 H 1.48495 * 109.47093 * 59.99499 * 21 19 17 25 25 N 1.34404 * 108.46023 * 179.77666 * 3 2 1 26 26 N 1.28764 * 109.51979 * 0.23155 * 25 3 2 27 27 N 1.34821 * 126.57984 * 180.17565 * 2 1 3 28 28 C 1.46499 * 126.59004 * 359.95794 * 27 2 1 29 29 C 1.53008 * 109.46794 * 120.27928 * 28 27 2 30 30 C 1.53000 * 109.47239 * 240.27700 * 28 27 2 31 31 H 1.08996 * 109.47556 * 90.01807 * 1 2 3 32 32 H 1.09002 * 109.47247 * 210.02396 * 1 2 3 33 33 H 1.09005 * 109.47015 * 330.02119 * 1 2 3 34 34 H 0.97001 * 119.99583 * 359.97438 * 6 4 3 35 35 H 1.09006 * 109.43152 * 324.91330 * 7 6 4 36 36 H 1.08998 * 109.57251 * 66.26369 * 8 7 6 37 37 H 1.09002 * 109.56874 * 305.90311 * 8 7 6 38 38 H 1.08998 * 110.51310 * 330.07571 * 11 9 8 39 39 H 1.09008 * 110.30954 * 207.78225 * 11 9 8 40 40 H 1.08997 * 110.37853 * 241.00512 * 12 11 9 41 41 H 1.08993 * 110.38315 * 118.64166 * 12 11 9 42 42 H 1.08998 * 109.57151 * 167.84374 * 15 13 12 43 43 H 1.09005 * 109.56516 * 288.20626 * 15 13 12 44 44 H 0.97006 * 119.99704 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.47389 * 0.28027 * 28 27 2 46 46 H 1.08997 * 109.46574 * 59.99939 * 29 28 27 47 47 H 1.09003 * 109.46994 * 179.97438 * 29 28 27 48 48 H 1.08998 * 109.47165 * 300.00046 * 29 28 27 49 49 H 1.09003 * 109.47208 * 180.02562 * 30 28 27 50 50 H 1.09001 * 109.46863 * 300.00511 * 30 28 27 51 51 H 1.09000 * 109.47105 * 60.00549 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8739 2.5026 0.0009 5 8 0.6861 2.7628 -0.0035 6 7 2.7818 3.4987 0.0066 7 6 2.3378 4.8947 0.0081 8 6 3.4329 5.7785 -0.5961 9 6 3.0202 7.2518 -0.4495 10 1 3.6891 7.9287 -0.9810 11 6 1.5608 7.3807 -0.9309 12 6 0.7063 7.1150 0.3263 13 6 1.7331 6.8454 1.4503 14 1 1.3849 7.2012 2.4200 15 6 2.0506 5.3416 1.4660 16 7 2.9588 7.5495 1.0019 17 6 3.8252 8.3014 1.7498 18 1 3.5355 8.6403 2.7334 19 6 5.0757 8.6280 1.2435 20 7 5.5012 8.0697 0.1301 21 14 6.1547 9.8598 2.1423 22 1 7.4299 10.0341 1.4016 23 1 5.4505 11.1645 2.2283 24 1 6.4411 9.3608 3.5113 25 7 3.5985 0.6788 0.0050 26 7 3.6298 -0.6085 0.0032 27 7 2.3104 -1.0826 -0.0033 28 6 1.8863 -2.4849 -0.0068 29 6 2.4341 -3.1803 -1.2547 30 6 2.4239 -3.1834 1.2438 31 1 -0.3634 -0.0003 -1.0276 32 1 -0.3634 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 3.7294 3.2912 0.0105 35 1 1.4285 4.9866 -0.5861 36 1 3.5558 5.5371 -1.6519 37 1 4.3717 5.6080 -0.0692 38 1 1.3454 6.6390 -1.7001 39 1 1.3750 8.3855 -1.3108 40 1 0.0705 6.2426 0.1757 41 1 0.1017 7.9896 0.5662 42 1 2.9214 5.1588 2.0956 43 1 1.1940 4.7917 1.8560 44 1 6.3753 8.2977 -0.2235 45 1 0.7975 -2.5351 -0.0113 46 1 3.5229 -3.1300 -1.2501 47 1 2.1189 -4.2238 -1.2571 48 1 2.0511 -2.6827 -2.1456 49 1 2.1087 -4.2269 1.2410 50 1 3.5127 -3.1331 1.2483 51 1 2.0336 -2.6880 2.1328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021422900.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:42 Heat of formation + Delta-G solvation = 58.618424 kcal Electronic energy + Delta-G solvation = -31624.498158 eV Core-core repulsion = 27560.486015 eV Total energy + Delta-G solvation = -4064.012143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.33907 -41.31648 -39.83348 -37.36782 -35.92320 -34.51577 -33.96597 -32.27803 -31.92613 -30.99660 -30.87772 -28.72120 -28.28178 -26.54882 -25.06172 -24.90438 -24.45907 -22.75665 -21.53600 -21.09132 -20.77894 -20.29565 -19.02438 -18.27355 -17.54240 -17.26203 -17.19550 -16.72597 -15.98353 -15.81469 -15.50675 -15.38424 -15.15041 -14.62131 -14.55701 -14.39984 -14.27128 -13.98872 -13.95753 -13.79070 -13.55452 -13.23951 -13.21723 -13.18455 -13.06209 -12.96111 -12.79127 -12.55209 -12.53511 -12.51495 -12.40671 -12.22539 -11.94762 -11.92908 -11.40503 -11.33766 -11.16829 -11.12781 -11.03742 -10.93787 -10.54577 -10.25463 -9.86190 -8.73310 -7.79469 -5.13743 0.12574 0.62208 1.06202 1.49158 1.50610 1.56708 2.20067 2.26208 2.53780 3.17233 3.31547 3.38398 3.55548 3.61849 3.73763 3.80819 3.97566 4.02806 4.04580 4.12932 4.31500 4.38526 4.41426 4.50117 4.53792 4.57826 4.61907 4.63641 4.65490 4.72807 4.74961 4.77147 4.85702 4.90841 4.97664 5.10755 5.16066 5.17745 5.18808 5.21156 5.22725 5.31338 5.34695 5.56020 5.58397 5.58811 5.64750 5.80356 5.88685 6.31374 6.50376 6.91877 7.14164 7.17695 7.80204 8.61262 9.31392 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.002513 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.384746 B =11138.278405 C =11951.365673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.132 3.868 3 C -0.133 4.133 4 C 0.603 3.397 5 O -0.557 6.557 6 N -0.708 5.708 7 C 0.162 3.838 8 C -0.108 4.108 9 C 0.177 3.823 10 H 0.074 0.926 11 C -0.135 4.135 12 C -0.119 4.119 13 C 0.141 3.859 14 H 0.067 0.933 15 C -0.122 4.122 16 N -0.604 5.604 17 C -0.233 4.233 18 H 0.072 0.928 19 C -0.056 4.056 20 N -0.933 5.933 21 Si 0.968 3.032 22 H -0.296 1.296 23 H -0.281 1.281 24 H -0.283 1.283 25 N -0.232 5.232 26 N -0.087 5.087 27 N -0.345 5.345 28 C 0.131 3.869 29 C -0.159 4.159 30 C -0.160 4.160 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.404 0.596 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.035 0.965 43 H 0.061 0.939 44 H 0.246 0.754 45 H 0.145 0.855 46 H 0.054 0.946 47 H 0.114 0.886 48 H 0.058 0.942 49 H 0.114 0.886 50 H 0.054 0.946 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.324 -24.490 -2.654 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.007 4.007 3 C -0.273 4.273 4 C 0.388 3.612 5 O -0.436 6.436 6 N -0.356 5.356 7 C 0.059 3.941 8 C -0.148 4.148 9 C 0.070 3.930 10 H 0.092 0.908 11 C -0.174 4.174 12 C -0.157 4.157 13 C 0.034 3.966 14 H 0.085 0.915 15 C -0.163 4.163 16 N -0.326 5.326 17 C -0.362 4.362 18 H 0.090 0.910 19 C -0.250 4.250 20 N -0.581 5.581 21 Si 0.798 3.202 22 H -0.223 1.223 23 H -0.208 1.208 24 H -0.209 1.209 25 N -0.104 5.104 26 N -0.067 5.067 27 N -0.132 5.132 28 C 0.032 3.968 29 C -0.217 4.217 30 C -0.218 4.218 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.238 0.762 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.162 0.838 46 H 0.073 0.927 47 H 0.133 0.867 48 H 0.078 0.922 49 H 0.133 0.867 50 H 0.073 0.927 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.419 -24.623 -2.632 27.703 hybrid contribution 1.015 0.980 0.527 1.506 sum -11.405 -23.643 -2.105 26.335 Atomic orbital electron populations 1.20846 0.82155 1.06264 1.05802 1.22377 0.97528 0.85651 0.95161 1.21326 0.89600 0.95618 1.20736 1.16931 0.85458 0.82973 0.75811 1.90702 1.16138 1.84044 1.52686 1.46116 1.10132 1.06252 1.73072 1.21486 0.98028 0.78210 0.96406 1.22132 0.97105 0.97111 0.98486 1.21301 0.93733 0.92797 0.85172 0.90793 1.22657 0.96341 1.00909 0.97486 1.22540 0.96971 1.01353 0.94876 1.21765 0.87934 0.90106 0.96844 0.91526 1.22734 0.99720 0.97880 0.95953 1.45367 1.25689 1.56855 1.04659 1.19219 0.93961 1.23576 0.99422 0.90980 1.25493 0.97734 1.02452 0.99350 1.70042 1.19188 1.45636 1.23205 0.85315 0.77879 0.79421 0.77617 1.22254 1.20750 1.20909 1.74621 1.20037 1.05018 1.10768 1.81814 0.98308 1.02768 1.23769 1.50990 1.05099 1.08563 1.48591 1.22221 1.02530 0.73025 0.99013 1.22163 1.01921 1.02552 0.95032 1.22178 1.01991 1.02574 0.95065 0.87530 0.87104 0.88607 0.76151 0.88999 0.92816 0.93958 0.90704 0.92595 0.90264 0.91609 0.94606 0.92009 0.94507 0.83796 0.92670 0.86746 0.92250 0.86720 0.92680 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 9.40 71.24 0.67 -0.61 16 2 C 0.13 2.89 7.02 41.72 0.29 3.18 16 3 C -0.13 -3.97 6.99 40.82 0.29 -3.69 16 4 C 0.60 20.16 7.79 86.69 0.67 20.84 16 5 O -0.56 -19.32 14.38 -4.02 -0.06 -19.37 16 6 N -0.71 -25.03 5.08 -441.94 -2.25 -27.28 16 7 C 0.16 6.12 2.13 45.79 0.10 6.21 16 8 C -0.11 -4.67 5.00 30.88 0.15 -4.51 16 9 C 0.18 8.24 3.12 45.30 0.14 8.39 16 10 H 0.07 4.00 6.36 -2.39 -0.02 3.99 16 11 C -0.14 -5.05 5.96 31.46 0.19 -4.86 16 12 C -0.12 -4.15 5.99 31.59 0.19 -3.96 16 13 C 0.14 5.82 4.28 45.43 0.19 6.01 16 14 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 15 C -0.12 -4.84 5.37 31.58 0.17 -4.67 16 16 N -0.60 -30.15 2.81 -637.94 -1.79 -31.95 16 17 C -0.23 -12.89 10.38 84.03 0.87 -12.02 16 18 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 19 C -0.06 -3.14 5.42 84.86 0.46 -2.68 16 20 N -0.93 -54.36 10.60 21.65 0.23 -54.13 16 21 Si 0.97 45.95 29.56 68.60 2.03 47.97 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 N -0.23 -7.45 12.04 -49.99 -0.60 -8.05 16 26 N -0.09 -2.43 13.67 37.02 0.51 -1.92 16 27 N -0.35 -6.76 3.28 -313.38 -1.03 -7.79 16 28 C 0.13 1.22 3.68 44.99 0.17 1.38 16 29 C -0.16 -1.27 9.47 71.98 0.68 -0.59 16 30 C -0.16 -1.32 9.47 71.98 0.68 -0.64 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 0.66 7.20 -2.39 -0.02 0.64 16 33 H 0.10 1.79 6.43 -2.38 -0.02 1.78 16 34 H 0.40 14.45 8.29 -92.71 -0.77 13.68 16 35 H 0.09 3.38 4.96 -2.38 -0.01 3.37 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.04 2.13 8.00 -2.39 -0.02 2.11 16 38 H 0.07 2.48 7.03 -2.39 -0.02 2.47 16 39 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.08 2.49 7.06 -2.39 -0.02 2.47 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 44 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16 45 H 0.14 0.37 6.79 -2.39 -0.02 0.35 16 46 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 50 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -71.19 398.32 3.13 -68.06 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.18 Total: 26.65 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 5.92 Total: 7.80 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -4.94 Total: -131.12 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.06 Total: -19.37 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -71.19 3.13 -68.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021422900.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.681 kcal (2) G-P(sol) polarization free energy of solvation -71.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds