Wall clock time and date at job start Wed Apr 1 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30838 * 126.46633 * 2 1 4 4 N 1.28907 * 109.73820 * 179.97438 * 3 2 1 5 5 C 1.29834 * 109.48229 * 359.96787 * 4 3 2 6 6 N 1.34694 * 126.46186 * 179.97438 * 2 1 3 7 7 C 1.46263 * 128.84549 * 0.18318 * 6 2 1 8 8 C 1.53321 * 108.72376 * 162.85759 * 7 6 2 9 9 H 1.08999 * 109.43844 * 290.26999 * 8 7 6 10 10 C 1.50709 * 109.44878 * 170.32750 * 8 7 6 11 11 O 1.21280 * 120.00019 * 359.88657 * 10 8 7 12 12 N 1.34776 * 119.99763 * 179.89346 * 10 8 7 13 13 C 1.46500 * 119.99871 * 179.97438 * 12 10 8 14 14 C 1.52994 * 109.47365 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.49527 * 55.06429 * 14 13 12 16 16 C 1.53035 * 109.49884 * 175.16175 * 14 13 12 17 17 C 1.53048 * 109.53840 * 181.32032 * 16 14 13 18 18 C 1.53628 * 109.23973 * 298.51030 * 17 16 14 19 19 N 1.46932 * 108.54022 * 54.85643 * 18 17 16 20 20 C 1.36940 * 120.62774 * 126.37003 * 19 18 17 21 21 H 1.07999 * 119.99736 * 209.02779 * 20 19 18 22 22 C 1.38812 * 120.00058 * 29.02082 * 20 19 18 23 23 N 1.31617 * 119.99809 * 24.34730 * 22 20 19 24 24 Si 1.86801 * 120.00066 * 204.34425 * 22 20 19 25 25 H 1.48493 * 109.47006 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.46697 * 300.00189 * 24 22 20 27 27 H 1.48500 * 109.46788 * 60.00296 * 24 22 20 28 28 C 1.46917 * 118.73868 * 306.08972 * 19 18 17 29 29 C 1.53140 * 109.58314 * 50.29617 * 8 7 6 30 30 C 1.50800 * 128.52777 * 180.09407 * 5 4 3 31 31 H 1.08997 * 109.47039 * 89.97914 * 1 2 3 32 32 H 1.08996 * 109.47354 * 209.98146 * 1 2 3 33 33 H 1.09004 * 109.46670 * 329.98168 * 1 2 3 34 34 H 1.08998 * 109.59384 * 43.08576 * 7 6 2 35 35 H 1.08997 * 109.59174 * 282.63144 * 7 6 2 36 36 H 0.97000 * 120.00351 * 359.97438 * 12 10 8 37 37 H 1.09005 * 109.46913 * 59.99448 * 13 12 10 38 38 H 1.09002 * 109.46957 * 299.99910 * 13 12 10 39 39 H 1.09003 * 109.45997 * 301.33681 * 16 14 13 40 40 H 1.09000 * 109.46253 * 61.30181 * 16 14 13 41 41 H 1.08998 * 109.49880 * 58.58403 * 17 16 14 42 42 H 1.08992 * 109.49849 * 178.65009 * 17 16 14 43 43 H 1.08991 * 109.74061 * 295.12000 * 18 17 16 44 44 H 1.09000 * 109.66306 * 174.54739 * 18 17 16 45 45 H 0.97001 * 120.00351 * 5.77293 * 23 22 20 46 46 H 1.09004 * 109.58457 * 173.64716 * 28 19 18 47 47 H 1.09000 * 109.59150 * 294.07397 * 28 19 18 48 48 H 1.09005 * 109.49970 * 50.50770 * 29 8 7 49 49 H 1.08998 * 109.49916 * 170.57505 * 29 8 7 50 50 H 1.08998 * 109.73227 * 44.47239 * 30 5 4 51 51 H 1.08997 * 109.73161 * 283.79471 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6812 0.0005 5 6 3.5816 -0.6157 0.0016 6 7 2.3075 -1.0833 0.0005 7 6 1.9365 -2.4981 -0.0025 8 6 3.1550 -3.3255 -0.4286 9 1 3.3620 -3.1492 -1.4841 10 6 2.8688 -4.7890 -0.2108 11 8 1.7987 -5.1368 0.2419 12 7 3.8020 -5.7113 -0.5190 13 6 3.5240 -7.1339 -0.3068 14 6 4.7383 -7.9603 -0.7350 15 1 5.6233 -7.6078 -0.2052 16 6 4.4961 -9.4343 -0.4022 17 6 5.7237 -10.2572 -0.8001 18 6 5.9462 -10.1342 -2.3152 19 7 6.0381 -8.7088 -2.6597 20 6 7.1125 -8.2281 -3.3596 21 1 7.4338 -7.2064 -3.2211 22 6 7.7887 -9.0541 -4.2469 23 7 7.1737 -10.0864 -4.7841 24 14 9.5714 -8.7006 -4.6787 25 1 10.0597 -9.7215 -5.6401 26 1 9.6737 -7.3529 -5.2939 27 1 10.3976 -8.7460 -3.4456 28 6 4.9524 -7.8103 -2.2445 29 6 4.3718 -2.9142 0.4054 30 6 4.8051 -1.4972 0.0045 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3633 0.8899 0.5141 34 1 1.1202 -2.6604 -0.7063 35 1 1.6241 -2.7961 0.9983 36 1 4.6577 -5.4331 -0.8813 37 1 2.6578 -7.4273 -0.9000 38 1 3.3180 -7.3103 0.7489 39 1 4.3191 -9.5405 0.6681 40 1 3.6254 -9.7923 -0.9514 41 1 6.5996 -9.8836 -0.2697 42 1 5.5601 -11.3031 -0.5408 43 1 5.1094 -10.5857 -2.8480 44 1 6.8726 -10.6375 -2.5919 45 1 6.2263 -10.2224 -4.6265 46 1 5.2229 -6.7797 -2.4745 47 1 4.0362 -8.0761 -2.7717 48 1 4.1099 -2.9298 1.4634 49 1 5.1902 -3.6106 0.2229 50 1 5.5303 -1.1178 0.7243 51 1 5.2485 -1.5146 -0.9911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023762024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:05 Heat of formation + Delta-G solvation = 40.701659 kcal Electronic energy + Delta-G solvation = -30883.673389 eV Core-core repulsion = 26818.884316 eV Total energy + Delta-G solvation = -4064.789073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.61048 -40.39972 -38.23899 -37.10650 -35.24638 -34.47019 -33.34126 -32.02338 -30.94876 -30.56002 -30.22104 -27.67811 -26.32865 -25.19183 -24.67025 -23.58009 -22.33388 -21.72711 -21.14609 -20.81745 -19.87778 -19.22319 -17.87605 -17.43414 -16.95793 -16.45151 -16.22898 -15.79394 -15.30908 -14.84782 -14.62864 -14.45603 -14.29704 -14.15354 -14.00965 -13.79694 -13.62444 -13.46370 -13.35755 -13.04010 -12.71302 -12.61705 -12.57193 -12.43587 -12.21021 -11.88192 -11.68670 -11.64276 -11.49917 -11.04304 -10.76545 -10.58830 -10.54595 -10.43830 -10.39976 -10.22950 -10.13260 -10.01389 -9.87465 -9.36462 -9.24495 -9.22370 -8.46451 -6.98306 -6.15825 -3.35368 1.50979 2.04235 2.26697 2.59463 2.91038 3.42392 3.45610 3.63722 3.65100 3.86449 4.02555 4.07600 4.16394 4.48367 4.49631 4.57964 4.66776 4.75752 4.85196 4.88667 5.03281 5.07891 5.10996 5.18178 5.21974 5.26254 5.29184 5.32769 5.40539 5.47643 5.52474 5.59950 5.65934 5.70733 5.74461 5.90551 5.97414 6.06652 6.10454 6.21112 6.36056 6.39239 6.53158 6.54311 6.57287 6.68056 6.99675 7.11108 7.23421 7.89002 7.89131 8.47973 8.48081 9.01134 9.73954 10.19066 11.12009 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.002312 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.033110 B =12107.294330 C =13458.145980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.300 5.300 4 N -0.290 5.290 5 C 0.173 3.827 6 N -0.470 5.470 7 C 0.125 3.875 8 C -0.125 4.125 9 H 0.114 0.886 10 C 0.524 3.476 11 O -0.543 6.543 12 N -0.716 5.716 13 C 0.127 3.873 14 C -0.118 4.118 15 H 0.075 0.925 16 C -0.100 4.100 17 C -0.136 4.136 18 C 0.149 3.851 19 N -0.598 5.598 20 C -0.353 4.353 21 H 0.055 0.945 22 C -0.022 4.022 23 N -0.913 5.913 24 Si 1.064 2.936 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.293 1.293 28 C 0.156 3.844 29 C -0.119 4.119 30 C -0.032 4.032 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.405 0.595 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.017 0.983 44 H 0.078 0.922 45 H 0.269 0.731 46 H 0.051 0.949 47 H 0.016 0.984 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.106 0.894 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 11.935 11.789 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.089 4.089 3 N -0.141 5.141 4 N -0.129 5.129 5 C -0.094 4.094 6 N -0.161 5.161 7 C 0.002 3.998 8 C -0.147 4.147 9 H 0.132 0.868 10 C 0.309 3.691 11 O -0.420 6.420 12 N -0.367 5.367 13 C 0.003 3.997 14 C -0.139 4.139 15 H 0.093 0.907 16 C -0.138 4.138 17 C -0.176 4.176 18 C 0.023 3.977 19 N -0.321 5.321 20 C -0.482 4.482 21 H 0.072 0.928 22 C -0.225 4.225 23 N -0.553 5.553 24 Si 0.893 3.107 25 H -0.210 1.210 26 H -0.219 1.219 27 H -0.220 1.220 28 C 0.029 3.971 29 C -0.157 4.157 30 C -0.072 4.072 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.241 0.759 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.034 0.966 48 H 0.099 0.901 49 H 0.113 0.887 50 H 0.125 0.875 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.255 12.549 11.228 19.215 hybrid contribution -1.393 -0.636 0.607 1.647 sum -10.648 11.913 11.835 19.884 Atomic orbital electron populations 1.20231 0.83658 1.04633 1.04159 1.24682 0.97125 0.82710 1.04341 1.74490 0.96128 1.23672 1.19818 1.74050 1.12284 1.08032 1.18578 1.24726 0.87048 0.92607 1.05027 1.46003 1.07020 1.08443 1.54652 1.21747 0.97612 0.75298 1.05140 1.21641 0.96372 0.92967 1.03709 0.86837 1.19968 0.84277 0.86942 0.77945 1.90727 1.24267 1.82019 1.45036 1.46041 1.18480 1.07233 1.64943 1.21514 0.98825 0.78456 1.00894 1.21955 0.96223 0.95323 1.00353 0.90693 1.21338 0.98809 0.94072 0.99585 1.22125 0.97209 0.98077 1.00151 1.21058 1.00253 0.86051 0.90324 1.44102 1.20559 1.03620 1.63863 1.19915 1.07550 1.00021 1.20758 0.92762 1.25879 1.05966 0.97121 0.93495 1.70785 1.12236 1.32086 1.40170 0.83541 0.75516 0.75513 0.76093 1.21046 1.21940 1.21990 1.20889 0.91361 0.94642 0.90191 1.21762 0.96820 0.96688 1.00437 1.20246 0.91208 0.90763 1.04939 0.89507 0.90279 0.88619 0.87867 0.87949 0.75923 0.91391 0.91655 0.93108 0.92447 0.92327 0.92922 0.96508 0.90379 0.91996 0.93043 0.96600 0.90145 0.88652 0.87537 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.29 36.01 0.37 -0.05 16 2 C 0.18 1.89 8.07 -155.45 -1.25 0.63 16 3 N -0.30 -4.18 12.23 32.70 0.40 -3.78 16 4 N -0.29 -4.07 12.21 32.76 0.40 -3.67 16 5 C 0.17 1.87 7.75 -155.30 -1.20 0.67 16 6 N -0.47 -4.55 3.11 -110.86 -0.35 -4.90 16 7 C 0.13 0.98 5.46 -4.00 -0.02 0.95 16 8 C -0.13 -0.93 2.54 -91.53 -0.23 -1.16 16 9 H 0.11 0.77 8.12 -51.93 -0.42 0.35 16 10 C 0.52 5.34 7.15 -10.98 -0.08 5.27 16 11 O -0.54 -7.29 15.83 5.56 0.09 -7.20 16 12 N -0.72 -7.33 5.15 -60.29 -0.31 -7.64 16 13 C 0.13 1.53 5.07 -4.04 -0.02 1.51 16 14 C -0.12 -1.69 2.38 -90.50 -0.21 -1.91 16 15 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.10 -1.46 5.16 -26.69 -0.14 -1.60 16 17 C -0.14 -2.34 6.10 -26.38 -0.16 -2.50 16 18 C 0.15 3.26 4.72 -3.48 -0.02 3.24 16 19 N -0.60 -13.76 2.83 -172.05 -0.49 -14.25 16 20 C -0.35 -9.21 9.48 -15.06 -0.14 -9.35 16 21 H 0.05 1.40 7.94 -52.49 -0.42 0.98 16 22 C -0.02 -0.59 4.69 -17.43 -0.08 -0.68 16 23 N -0.91 -26.35 12.45 55.49 0.69 -25.65 16 24 Si 1.06 24.08 29.98 -169.99 -5.10 18.98 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 28 C 0.16 2.85 5.60 -3.71 -0.02 2.83 16 29 C -0.12 -0.74 5.23 -26.40 -0.14 -0.88 16 30 C -0.03 -0.23 6.34 -27.57 -0.17 -0.40 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.37 8.03 -51.93 -0.42 -0.05 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.81 7.79 -51.93 -0.40 0.41 16 36 H 0.41 3.66 7.03 -40.82 -0.29 3.37 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.02 0.38 7.85 -51.93 -0.41 -0.03 16 44 H 0.08 1.95 6.38 -51.93 -0.33 1.62 16 45 H 0.27 7.83 6.71 -40.82 -0.27 7.55 16 46 H 0.05 0.91 7.13 -51.93 -0.37 0.54 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 49 H 0.09 0.48 7.32 -51.93 -0.38 0.10 16 50 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 399.42 15.07 6.02 6.02 Total: -1.00 -34.22 399.42 -10.59 -44.82 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -8.42 Total: 0.70 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -3.53 Total: -3.41 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.35 Total: -59.90 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: 0.09 Total: -7.20 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.10 Total: 18.98 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.22 -10.59 -44.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023762024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.517 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds