Wall clock time and date at job start Wed Apr 1 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30838 * 126.46633 * 2 1 4 4 N 1.28907 * 109.73820 * 179.97438 * 3 2 1 5 5 C 1.29834 * 109.48229 * 359.96787 * 4 3 2 6 6 N 1.34694 * 126.46186 * 179.97438 * 2 1 3 7 7 C 1.46263 * 128.84549 * 0.18318 * 6 2 1 8 8 C 1.53321 * 108.72376 * 162.85759 * 7 6 2 9 9 H 1.08999 * 109.43844 * 290.26999 * 8 7 6 10 10 C 1.50709 * 109.44878 * 170.32750 * 8 7 6 11 11 O 1.21280 * 120.00019 * 359.88657 * 10 8 7 12 12 N 1.34776 * 119.99763 * 179.89346 * 10 8 7 13 13 C 1.46500 * 119.99871 * 179.97438 * 12 10 8 14 14 C 1.52994 * 109.47365 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.49527 * 55.06429 * 14 13 12 16 16 C 1.53035 * 109.49884 * 175.16175 * 14 13 12 17 17 C 1.53048 * 109.53840 * 181.32032 * 16 14 13 18 18 C 1.53628 * 109.23973 * 298.51030 * 17 16 14 19 19 N 1.46932 * 108.54022 * 54.85643 * 18 17 16 20 20 C 1.36940 * 120.62774 * 126.37003 * 19 18 17 21 21 H 1.07999 * 119.99736 * 209.02779 * 20 19 18 22 22 C 1.38812 * 120.00058 * 29.02082 * 20 19 18 23 23 N 1.31617 * 119.99809 * 24.34730 * 22 20 19 24 24 Si 1.86801 * 120.00066 * 204.34425 * 22 20 19 25 25 H 1.48493 * 109.47006 * 180.02562 * 24 22 20 26 26 H 1.48502 * 109.46697 * 300.00189 * 24 22 20 27 27 H 1.48500 * 109.46788 * 60.00296 * 24 22 20 28 28 C 1.46917 * 118.73868 * 306.08972 * 19 18 17 29 29 C 1.53140 * 109.58314 * 50.29617 * 8 7 6 30 30 C 1.50800 * 128.52777 * 180.09407 * 5 4 3 31 31 H 1.08997 * 109.47039 * 89.97914 * 1 2 3 32 32 H 1.08996 * 109.47354 * 209.98146 * 1 2 3 33 33 H 1.09004 * 109.46670 * 329.98168 * 1 2 3 34 34 H 1.08998 * 109.59384 * 43.08576 * 7 6 2 35 35 H 1.08997 * 109.59174 * 282.63144 * 7 6 2 36 36 H 0.97000 * 120.00351 * 359.97438 * 12 10 8 37 37 H 1.09005 * 109.46913 * 59.99448 * 13 12 10 38 38 H 1.09002 * 109.46957 * 299.99910 * 13 12 10 39 39 H 1.09003 * 109.45997 * 301.33681 * 16 14 13 40 40 H 1.09000 * 109.46253 * 61.30181 * 16 14 13 41 41 H 1.08998 * 109.49880 * 58.58403 * 17 16 14 42 42 H 1.08992 * 109.49849 * 178.65009 * 17 16 14 43 43 H 1.08991 * 109.74061 * 295.12000 * 18 17 16 44 44 H 1.09000 * 109.66306 * 174.54739 * 18 17 16 45 45 H 0.97001 * 120.00351 * 5.77293 * 23 22 20 46 46 H 1.09004 * 109.58457 * 173.64716 * 28 19 18 47 47 H 1.09000 * 109.59150 * 294.07397 * 28 19 18 48 48 H 1.09005 * 109.49970 * 50.50770 * 29 8 7 49 49 H 1.08998 * 109.49916 * 170.57505 * 29 8 7 50 50 H 1.08998 * 109.73227 * 44.47239 * 30 5 4 51 51 H 1.08997 * 109.73161 * 283.79471 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6812 0.0005 5 6 3.5816 -0.6157 0.0016 6 7 2.3075 -1.0833 0.0005 7 6 1.9365 -2.4981 -0.0025 8 6 3.1550 -3.3255 -0.4286 9 1 3.3620 -3.1492 -1.4841 10 6 2.8688 -4.7890 -0.2108 11 8 1.7987 -5.1368 0.2419 12 7 3.8020 -5.7113 -0.5190 13 6 3.5240 -7.1339 -0.3068 14 6 4.7383 -7.9603 -0.7350 15 1 5.6233 -7.6078 -0.2052 16 6 4.4961 -9.4343 -0.4022 17 6 5.7237 -10.2572 -0.8001 18 6 5.9462 -10.1342 -2.3152 19 7 6.0381 -8.7088 -2.6597 20 6 7.1125 -8.2281 -3.3596 21 1 7.4338 -7.2064 -3.2211 22 6 7.7887 -9.0541 -4.2469 23 7 7.1737 -10.0864 -4.7841 24 14 9.5714 -8.7006 -4.6787 25 1 10.0597 -9.7215 -5.6401 26 1 9.6737 -7.3529 -5.2939 27 1 10.3976 -8.7460 -3.4456 28 6 4.9524 -7.8103 -2.2445 29 6 4.3718 -2.9142 0.4054 30 6 4.8051 -1.4972 0.0045 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3633 0.8899 0.5141 34 1 1.1202 -2.6604 -0.7063 35 1 1.6241 -2.7961 0.9983 36 1 4.6577 -5.4331 -0.8813 37 1 2.6578 -7.4273 -0.9000 38 1 3.3180 -7.3103 0.7489 39 1 4.3191 -9.5405 0.6681 40 1 3.6254 -9.7923 -0.9514 41 1 6.5996 -9.8836 -0.2697 42 1 5.5601 -11.3031 -0.5408 43 1 5.1094 -10.5857 -2.8480 44 1 6.8726 -10.6375 -2.5919 45 1 6.2263 -10.2224 -4.6265 46 1 5.2229 -6.7797 -2.4745 47 1 4.0362 -8.0761 -2.7717 48 1 4.1099 -2.9298 1.4634 49 1 5.1902 -3.6106 0.2229 50 1 5.5303 -1.1178 0.7243 51 1 5.2485 -1.5146 -0.9911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023762024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:04 Heat of formation + Delta-G solvation = 20.112669 kcal Electronic energy + Delta-G solvation = -30884.566194 eV Core-core repulsion = 26818.884316 eV Total energy + Delta-G solvation = -4065.681878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -44.39589 -41.24503 -39.60661 -37.89151 -36.47574 -35.24069 -34.76056 -32.84734 -32.20040 -31.81546 -31.34109 -28.35711 -27.36245 -27.02619 -25.53142 -24.29990 -23.86868 -22.64690 -22.34598 -21.68835 -20.81803 -20.39507 -19.35660 -18.58733 -17.69120 -17.27558 -17.07550 -16.68318 -16.23167 -16.17045 -15.85764 -15.49152 -15.41640 -15.17552 -15.04359 -14.91386 -14.86869 -14.69263 -14.00236 -13.94357 -13.71222 -13.64850 -13.51883 -13.27168 -13.23668 -13.18368 -12.69338 -12.63964 -12.41947 -12.27707 -12.09145 -11.97193 -11.92110 -11.73971 -11.67299 -11.49593 -11.38892 -11.17399 -11.08487 -10.92093 -10.44705 -10.12723 -10.05586 -8.90388 -8.21018 -5.39529 0.76632 1.33323 1.48045 1.60348 1.67102 1.74685 1.85180 2.11648 2.67240 3.02867 3.22616 3.24005 3.36021 3.49823 3.51109 3.55770 3.87756 3.89200 3.95643 3.97697 4.00452 4.10187 4.23182 4.28521 4.30125 4.45167 4.52600 4.53107 4.60222 4.63722 4.68417 4.79384 4.80581 4.81423 4.82853 4.86807 4.93760 4.97620 5.00204 5.02110 5.13088 5.20638 5.23364 5.26437 5.31056 5.40211 5.57188 5.85451 5.87111 6.40972 6.43279 7.08372 7.09304 7.64907 7.79691 8.25818 9.02842 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.002312 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.033110 B =12107.294330 C =13458.145980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.180 3.820 3 N -0.347 5.347 4 N -0.336 5.336 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.126 3.874 8 C -0.116 4.116 9 H 0.125 0.875 10 C 0.530 3.470 11 O -0.574 6.574 12 N -0.713 5.713 13 C 0.138 3.862 14 C -0.100 4.100 15 H 0.079 0.921 16 C -0.098 4.098 17 C -0.126 4.126 18 C 0.152 3.848 19 N -0.617 5.617 20 C -0.350 4.350 21 H 0.058 0.942 22 C -0.078 4.078 23 N -0.946 5.946 24 Si 1.112 2.888 25 H -0.298 1.298 26 H -0.274 1.274 27 H -0.278 1.278 28 C 0.153 3.847 29 C -0.111 4.111 30 C -0.029 4.029 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.413 0.587 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.071 0.929 43 H -0.001 1.001 44 H 0.039 0.961 45 H 0.253 0.747 46 H 0.057 0.943 47 H 0.004 0.996 48 H 0.079 0.921 49 H 0.113 0.887 50 H 0.117 0.883 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.386 12.388 13.383 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 N -0.187 5.187 4 N -0.175 5.175 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.003 3.997 8 C -0.138 4.138 9 H 0.143 0.857 10 C 0.316 3.684 11 O -0.454 6.454 12 N -0.364 5.364 13 C 0.014 3.986 14 C -0.120 4.120 15 H 0.097 0.903 16 C -0.136 4.136 17 C -0.165 4.165 18 C 0.026 3.974 19 N -0.341 5.341 20 C -0.480 4.480 21 H 0.075 0.925 22 C -0.275 4.275 23 N -0.588 5.588 24 Si 0.937 3.063 25 H -0.224 1.224 26 H -0.200 1.200 27 H -0.204 1.204 28 C 0.028 3.972 29 C -0.149 4.149 30 C -0.069 4.069 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.250 0.750 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.017 0.983 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.022 0.978 48 H 0.098 0.902 49 H 0.132 0.868 50 H 0.135 0.865 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.407 13.038 12.851 20.582 hybrid contribution -1.427 -0.782 0.107 1.631 sum -10.834 12.256 12.958 20.869 Atomic orbital electron populations 1.20431 0.80902 1.05830 1.05402 1.25402 0.98620 0.82301 1.02515 1.74387 0.96684 1.25569 1.22070 1.73941 1.12846 1.09969 1.20726 1.25360 0.88471 0.92254 1.03420 1.46124 1.06638 1.08949 1.54324 1.21842 0.98101 0.74215 1.05507 1.21581 0.96739 0.90825 1.04643 0.85710 1.20272 0.83501 0.87744 0.76891 1.90723 1.25544 1.82652 1.46461 1.45973 1.18953 1.06587 1.64891 1.21277 0.97008 0.79076 1.01255 1.21705 0.97493 0.95914 0.96906 0.90312 1.21347 0.97201 0.93467 1.01593 1.21982 0.98512 0.99973 0.95992 1.20929 0.97605 0.85278 0.93576 1.44367 1.21366 1.04500 1.63880 1.20226 1.08017 1.00026 1.19734 0.92458 1.27151 1.09194 0.97152 0.93965 1.70906 1.11380 1.33965 1.42594 0.82895 0.71587 0.75721 0.76143 1.22430 1.19994 1.20448 1.21045 0.89327 0.93940 0.92873 1.21747 0.96722 0.96384 1.00073 1.20424 0.89956 0.90415 1.06070 0.88109 0.88404 0.88071 0.86957 0.87905 0.75008 0.92358 0.90455 0.89769 0.92582 0.92583 0.91088 0.98252 0.94244 0.93739 0.92407 0.97756 0.90214 0.86842 0.86512 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.29 71.24 0.73 0.01 16 2 C 0.18 3.66 8.07 138.14 1.11 4.77 16 3 N -0.35 -9.74 12.23 -50.46 -0.62 -10.36 16 4 N -0.34 -9.48 12.21 -50.28 -0.61 -10.10 16 5 C 0.17 3.56 7.75 138.14 1.07 4.63 16 6 N -0.47 -8.42 3.11 -504.64 -1.57 -9.99 16 7 C 0.13 1.68 5.46 86.53 0.47 2.15 16 8 C -0.12 -1.40 2.54 -11.38 -0.03 -1.43 16 9 H 0.13 1.30 8.12 -2.39 -0.02 1.28 16 10 C 0.53 9.31 7.15 87.66 0.63 9.93 16 11 O -0.57 -14.02 15.83 -3.03 -0.05 -14.07 16 12 N -0.71 -12.39 5.15 -463.05 -2.39 -14.78 16 13 C 0.14 2.91 5.07 86.38 0.44 3.35 16 14 C -0.10 -2.59 2.38 -10.72 -0.03 -2.62 16 15 H 0.08 2.05 8.14 -2.38 -0.02 2.04 16 16 C -0.10 -2.58 5.16 30.62 0.16 -2.42 16 17 C -0.13 -4.12 6.10 30.82 0.19 -3.93 16 18 C 0.15 6.75 4.72 86.51 0.41 7.16 16 19 N -0.62 -28.34 2.83 -698.25 -1.98 -30.32 16 20 C -0.35 -18.20 9.48 84.03 0.80 -17.40 16 21 H 0.06 2.89 7.94 -2.91 -0.02 2.87 16 22 C -0.08 -4.27 4.69 84.86 0.40 -3.87 16 23 N -0.95 -56.29 12.45 21.65 0.27 -56.02 16 24 Si 1.11 48.65 29.98 68.60 2.06 50.70 16 25 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 27 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 28 C 0.15 5.43 5.60 86.37 0.48 5.91 16 29 C -0.11 -1.04 5.23 30.81 0.16 -0.88 16 30 C -0.03 -0.35 6.34 30.05 0.19 -0.16 16 31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.68 8.03 -2.39 -0.02 0.66 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.41 7.79 -2.39 -0.02 1.39 16 36 H 0.41 6.04 7.03 -92.71 -0.65 5.39 16 37 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.00 -0.02 7.85 -2.39 -0.02 -0.04 16 44 H 0.04 2.03 6.38 -2.39 -0.02 2.02 16 45 H 0.25 15.37 6.71 -92.71 -0.62 14.74 16 46 H 0.06 1.93 7.13 -2.39 -0.02 1.92 16 47 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 48 H 0.08 0.81 8.12 -2.38 -0.02 0.79 16 49 H 0.11 0.70 7.32 -2.39 -0.02 0.68 16 50 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -77.23 399.42 2.72 -74.50 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.43 Total: 15.23 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 7.18 Total: 5.20 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -6.89 Total: -131.57 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.05 Total: -14.07 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.06 Total: 50.70 kcal Total: -77.23 2.72 -74.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023762024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.616 kcal (2) G-P(sol) polarization free energy of solvation -77.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds