Wall clock time and date at job start Wed Apr 1 2020 05:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33472 * 125.50136 * 2 1 4 4 C 1.30321 * 109.72571 * 180.02562 * 3 2 1 5 5 N 1.34676 * 108.05124 * 359.93211 * 4 3 2 6 6 N 1.30983 * 125.49538 * 179.73728 * 2 1 3 7 7 C 1.46289 * 125.05198 * 180.12182 * 5 4 3 8 8 C 1.53306 * 108.77646 * 17.01226 * 7 5 4 9 9 H 1.09000 * 109.46702 * 69.87338 * 8 7 5 10 10 C 1.50699 * 109.46874 * 189.86547 * 8 7 5 11 11 O 1.21286 * 119.99923 * 120.00229 * 10 8 7 12 12 N 1.34770 * 120.00021 * 299.99406 * 10 8 7 13 13 C 1.46501 * 119.99829 * 180.02562 * 12 10 8 14 14 C 1.53009 * 109.47118 * 185.38944 * 13 12 10 15 15 H 1.09000 * 109.58365 * 303.71157 * 14 13 12 16 16 C 1.53189 * 109.58678 * 183.42321 * 14 13 12 17 17 C 1.53039 * 109.31009 * 185.57956 * 16 14 13 18 18 C 1.53041 * 109.53869 * 61.36403 * 17 16 14 19 19 C 1.53192 * 109.31540 * 298.63258 * 18 17 16 20 20 N 1.46931 * 109.58344 * 63.98660 * 14 13 12 21 21 C 1.36933 * 120.63145 * 353.40340 * 20 14 13 22 22 H 1.08002 * 119.99881 * 322.61668 * 21 20 14 23 23 C 1.38812 * 120.00127 * 142.62439 * 21 20 14 24 24 N 1.31624 * 119.99895 * 347.14859 * 23 21 20 25 25 Si 1.86801 * 120.00105 * 167.15293 * 23 21 20 26 26 H 1.48497 * 109.46993 * 59.99401 * 25 23 21 27 27 H 1.48497 * 109.46880 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46872 * 299.99425 * 25 23 21 29 29 C 1.53159 * 109.48528 * 309.86986 * 8 7 5 30 30 C 1.50929 * 127.90268 * 179.90861 * 4 3 2 31 31 H 1.08999 * 109.47277 * 90.02250 * 1 2 3 32 32 H 1.09002 * 109.47372 * 210.01836 * 1 2 3 33 33 H 1.09005 * 109.46945 * 330.02432 * 1 2 3 34 34 H 1.09002 * 109.58793 * 136.79907 * 7 5 4 35 35 H 1.09001 * 109.59108 * 257.08017 * 7 5 4 36 36 H 0.96999 * 120.00364 * 0.02562 * 12 10 8 37 37 H 1.08993 * 109.47465 * 305.38827 * 13 12 10 38 38 H 1.09001 * 109.47379 * 65.39445 * 13 12 10 39 39 H 1.09003 * 109.49786 * 305.52931 * 16 14 13 40 40 H 1.09000 * 109.49807 * 65.59573 * 16 14 13 41 41 H 1.09000 * 109.45818 * 181.38597 * 17 16 14 42 42 H 1.08996 * 109.45974 * 301.35583 * 17 16 14 43 43 H 1.08997 * 109.49536 * 58.58956 * 18 17 16 44 44 H 1.09002 * 109.49542 * 178.68134 * 18 17 16 45 45 H 1.08990 * 109.58527 * 174.42173 * 19 18 17 46 46 H 1.08998 * 109.58580 * 294.70900 * 19 18 17 47 47 H 0.96991 * 119.99611 * 180.02562 * 24 23 21 48 48 H 1.08996 * 109.51041 * 189.11613 * 29 8 7 49 49 H 1.09002 * 109.50735 * 309.20761 * 29 8 7 50 50 H 1.09005 * 109.71926 * 76.28976 * 30 4 3 51 51 H 1.08998 * 109.71890 * 315.64483 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0866 0.0000 4 6 3.5362 0.7323 -0.0005 5 7 3.5897 -0.6134 0.0006 6 7 2.2675 -1.0664 0.0049 7 6 4.8196 -1.4054 0.0030 8 6 5.9853 -0.5052 0.4286 9 1 5.8847 -0.2557 1.4849 10 6 7.2874 -1.2304 0.2056 11 8 8.1195 -0.7658 -0.5445 12 7 7.5272 -2.3951 0.8398 13 6 8.7932 -3.0998 0.6233 14 6 8.7571 -4.4473 1.3474 15 1 8.5454 -4.2883 2.4047 16 6 10.1102 -5.1489 1.1942 17 6 10.0241 -6.5520 1.7992 18 6 8.9689 -7.3687 1.0496 19 6 7.6028 -6.6922 1.2011 20 7 7.7120 -5.2952 0.7579 21 6 6.8588 -4.7945 -0.1888 22 1 6.5023 -3.7779 -0.1109 23 6 6.4518 -5.5933 -1.2486 24 7 7.0686 -6.7308 -1.4900 25 14 5.0290 -5.0541 -2.3321 26 1 5.3569 -3.7532 -2.9687 27 1 4.7942 -6.0747 -3.3850 28 1 3.8051 -4.9056 -1.5044 29 6 5.9681 0.7806 -0.4034 30 6 4.7522 1.6263 -0.0027 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3634 -0.8898 0.5141 33 1 -0.3633 0.8902 0.5135 34 1 4.7206 -2.2320 0.7065 35 1 5.0041 -1.7971 -0.9973 36 1 6.8616 -2.7669 1.4395 37 1 8.9394 -3.2648 -0.4441 38 1 9.6147 -2.4994 1.0141 39 1 10.3637 -5.2236 0.1367 40 1 10.8783 -4.5752 1.7128 41 1 10.9927 -7.0445 1.7136 42 1 9.7462 -6.4777 2.8505 43 1 9.2331 -7.4225 -0.0065 44 1 8.9246 -8.3752 1.4658 45 1 6.8671 -7.2135 0.5889 46 1 7.2948 -6.7208 2.2463 47 1 6.7845 -7.2888 -2.2307 48 1 6.8815 1.3459 -0.2188 49 1 5.9038 0.5283 -1.4619 50 1 4.9053 2.0413 0.9936 51 1 4.6134 2.4343 -0.7209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024571404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:02 Heat of formation + Delta-G solvation = 45.094987 kcal Electronic energy + Delta-G solvation = -32283.422651 eV Core-core repulsion = 28218.824087 eV Total energy + Delta-G solvation = -4064.598564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.45636 -41.15737 -39.39114 -37.67934 -35.84978 -34.80155 -34.28911 -33.17558 -32.30910 -31.71088 -30.70151 -29.43887 -27.65311 -26.44163 -25.36745 -24.18828 -23.78669 -22.30647 -21.91099 -21.50564 -20.65566 -20.37162 -18.89890 -17.91421 -17.79807 -17.20532 -17.16063 -16.67263 -16.42830 -16.03320 -15.66677 -15.39082 -15.28818 -15.09389 -14.94250 -14.84706 -14.64665 -14.22127 -14.02354 -13.76523 -13.61443 -13.53411 -13.35211 -13.18804 -13.09310 -12.90381 -12.83607 -12.67423 -12.60811 -12.30354 -12.25511 -12.04891 -11.96463 -11.79448 -11.48647 -11.23773 -11.14466 -11.03857 -10.85980 -10.81218 -10.42331 -10.38524 -9.81421 -8.42430 -7.82153 -5.35943 0.52668 1.05532 1.32786 1.38018 1.39904 1.63657 1.77546 2.22000 2.43951 2.90153 3.13014 3.33046 3.43855 3.45573 3.62248 3.68756 3.79963 3.99608 4.05553 4.15414 4.20194 4.29460 4.32723 4.38145 4.49906 4.53807 4.60390 4.69598 4.71187 4.74936 4.84440 4.85181 4.91700 4.93933 4.95149 5.03852 5.10054 5.17788 5.24826 5.26710 5.33151 5.39717 5.43963 5.48836 5.58078 5.72263 5.73837 5.78573 5.95880 6.50547 6.57161 7.02641 7.22524 7.22938 7.89435 8.46310 9.19961 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.003653 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.700578 B = 7664.012925 C = 8930.117622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.206 3.794 3 N -0.558 5.558 4 C 0.277 3.723 5 N -0.382 5.382 6 N -0.356 5.356 7 C 0.137 3.863 8 C -0.108 4.108 9 H 0.144 0.856 10 C 0.520 3.480 11 O -0.571 6.571 12 N -0.696 5.696 13 C 0.142 3.858 14 C 0.158 3.842 15 H 0.057 0.943 16 C -0.124 4.124 17 C -0.102 4.102 18 C -0.121 4.121 19 C 0.164 3.836 20 N -0.597 5.597 21 C -0.246 4.246 22 H 0.089 0.911 23 C -0.033 4.033 24 N -0.915 5.915 25 Si 0.924 3.076 26 H -0.290 1.290 27 H -0.302 1.302 28 H -0.280 1.280 29 C -0.103 4.103 30 C -0.031 4.031 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.411 0.589 37 H 0.038 0.962 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.035 0.965 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.015 0.985 47 H 0.242 0.758 48 H 0.116 0.884 49 H 0.059 0.941 50 H 0.134 0.866 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.414 13.860 9.596 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 N -0.287 5.287 4 C 0.001 3.999 5 N -0.173 5.173 6 N -0.185 5.185 7 C 0.014 3.986 8 C -0.130 4.130 9 H 0.162 0.838 10 C 0.306 3.694 11 O -0.451 6.451 12 N -0.347 5.347 13 C 0.018 3.982 14 C 0.052 3.948 15 H 0.075 0.925 16 C -0.164 4.164 17 C -0.139 4.139 18 C -0.160 4.160 19 C 0.038 3.962 20 N -0.322 5.322 21 C -0.377 4.377 22 H 0.106 0.894 23 C -0.230 4.230 24 N -0.560 5.560 25 Si 0.755 3.245 26 H -0.216 1.216 27 H -0.228 1.228 28 H -0.206 1.206 29 C -0.142 4.142 30 C -0.070 4.070 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.085 0.915 36 H 0.248 0.752 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.032 0.968 47 H 0.052 0.948 48 H 0.134 0.866 49 H 0.078 0.922 50 H 0.152 0.848 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.189 13.565 8.951 16.399 hybrid contribution -0.863 -1.053 -1.327 1.901 sum -3.052 12.512 7.625 14.967 Atomic orbital electron populations 1.20242 0.81333 1.05081 1.04678 1.25238 0.99873 0.85152 0.97270 1.70212 1.00349 1.30946 1.27183 1.25197 0.96039 0.83899 0.94754 1.50146 1.05304 1.06499 1.55310 1.77980 0.87538 1.24137 1.28885 1.21750 0.78977 0.94252 1.03574 1.21687 0.89655 0.96161 1.05490 0.83846 1.20295 0.88248 0.81094 0.79794 1.90687 1.48807 1.67609 1.37998 1.46072 1.20462 1.21496 1.46630 1.21252 0.85173 0.91947 0.99853 1.21058 0.88996 0.89013 0.95742 0.92524 1.21902 0.97596 0.97039 0.99863 1.21352 0.98238 0.95176 0.99160 1.21752 0.97227 0.97728 0.99304 1.20690 0.95866 0.85202 0.94409 1.44360 1.34032 1.08409 1.45367 1.19721 1.18848 0.99177 0.99956 0.89368 1.25723 1.00696 0.98652 0.97973 1.70066 1.41319 1.14213 1.30437 0.86056 0.82024 0.76814 0.79619 1.21638 1.22821 1.20614 1.21566 0.99745 0.93653 0.99186 1.20657 0.83991 0.95191 1.07131 0.88889 0.89330 0.87915 0.87617 0.91524 0.75199 0.94309 0.90331 0.94799 0.90068 0.92030 0.91393 0.94576 0.93051 0.93164 0.96758 0.94818 0.86586 0.92245 0.84844 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.04 10.51 71.23 0.75 -0.29 16 2 C 0.21 6.00 8.15 138.48 1.13 7.13 16 3 N -0.56 -15.89 11.18 -179.31 -2.01 -17.90 16 4 C 0.28 7.17 7.72 138.37 1.07 8.24 16 5 N -0.38 -11.62 4.04 -338.36 -1.37 -12.98 16 6 N -0.36 -12.17 12.74 -51.07 -0.65 -12.82 16 7 C 0.14 3.94 6.42 86.52 0.56 4.50 16 8 C -0.11 -2.40 2.54 -11.38 -0.03 -2.42 16 9 H 0.14 2.24 8.12 -2.39 -0.02 2.22 16 10 C 0.52 15.31 7.09 87.66 0.62 15.93 16 11 O -0.57 -20.69 15.83 -3.05 -0.05 -20.74 16 12 N -0.70 -20.82 3.19 -463.05 -1.48 -22.29 16 13 C 0.14 4.75 4.54 86.38 0.39 5.14 16 14 C 0.16 5.39 2.96 44.98 0.13 5.52 16 15 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 16 C -0.12 -4.00 5.37 30.67 0.16 -3.84 16 17 C -0.10 -3.17 5.88 30.62 0.18 -2.99 16 18 C -0.12 -4.73 6.08 30.67 0.19 -4.55 16 19 C 0.16 7.11 5.63 86.36 0.49 7.60 16 20 N -0.60 -25.74 2.95 -675.13 -1.99 -27.73 16 21 C -0.25 -11.80 7.91 84.03 0.66 -11.13 16 22 H 0.09 3.91 4.84 -2.91 -0.01 3.90 16 23 C -0.03 -1.78 5.00 84.86 0.42 -1.35 16 24 N -0.91 -51.61 11.20 21.65 0.24 -51.36 16 25 Si 0.92 45.09 29.57 68.60 2.03 47.12 16 26 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 28 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 29 C -0.10 -2.00 4.68 30.79 0.14 -1.86 16 30 C -0.03 -0.49 6.33 30.07 0.19 -0.30 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.11 3.02 7.88 -2.39 -0.02 3.00 16 35 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 36 H 0.41 11.34 7.32 -92.71 -0.68 10.66 16 37 H 0.04 1.64 7.77 -2.39 -0.02 1.62 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.04 1.68 7.99 -2.39 -0.02 1.66 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.05 2.58 5.96 -2.39 -0.01 2.56 16 46 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.24 13.76 8.31 -92.71 -0.77 12.98 16 48 H 0.12 1.95 7.80 -2.39 -0.02 1.93 16 49 H 0.06 1.42 8.12 -2.39 -0.02 1.40 16 50 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 51 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -71.29 396.93 2.05 -69.24 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.26 Total: 24.14 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 7.06 Total: 25.32 kcal Atomic # 7 Polarization: -137.83 SS G_CDS: -7.25 Total: -145.08 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.29 2.05 -69.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024571404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.339 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds